Package evaluation to test FASTX on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:29:55.740


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.56s


################################################################################
# Installation
#

Installing FASTX...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [c2308a5c] + FASTX v2.1.7
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [67c07d97] + Automa v1.1.0
  [47718e42] + BioGenerics v0.1.5
  [c2308a5c] + FASTX v2.1.7
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [fdea26ae] + SIMD v3.7.2
  [354b36f9] + StringViews v1.3.6
  [3bb67fe8] + TranscodingStreams v0.11.3
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 3.61s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.88s



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# Testing
#

     Testing FASTX
      Status `/tmp/jl_9odFzi/Project.toml`
  [67c07d97] Automa v1.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.0
  [c2308a5c] FASTX v2.1.7
  [3372ea36] FormatSpecimens v1.4.0
  [aea7be01] PrecompileTools v1.3.3
  [354b36f9] StringViews v1.3.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_9odFzi/Manifest.toml`
  [67c07d97] Automa v1.1.0
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [c2308a5c] FASTX v2.1.7
  [3372ea36] FormatSpecimens v1.4.0
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [fdea26ae] SIMD v3.7.2
  [354b36f9] StringViews v1.3.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [7200193e] Twiddle v1.1.2
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
     Testing Running tests...
Test Summary: | Pass  Total   Time
FASTX         |  975    975  14.0s
Test Summary: | Pass  Total  Time
Record        |   91     91  4.0s
Test Summary: | Pass  Total  Time
IO            |   56     56  3.4s
Test Summary: | Pass  Total  Time
Index         |  650    650  5.1s
Test Summary: | Pass  Total  Time
Specimens     |   96     96  0.7s
Test Summary: | Pass  Total  Time
Record        |  170    170  3.9s
Test Summary: | Pass  Total  Time
IO            |   39     39  1.8s
Test Summary: | Pass  Total  Time
Specimens     |  115    115  1.6s
     Testing FASTX tests passed 

Testing completed after 88.81s

PkgEval succeeded after 125.43s