Package evaluation to test ExactWrightFisher on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T16:24:39.719


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.32s


################################################################################
# Installation
#

Installing ExactWrightFisher...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [8c1589a6] + ExactWrightFisher v0.1.12
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [c3fe647b] + AbstractAlgebra v0.47.6
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [8c1589a6] + ExactWrightFisher v0.1.12
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [e1d29d7a] + Missings v1.2.0
⌅ [2edaba10] + Nemo v0.52.4
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [21216c6a] + Preferences v1.5.0
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [fb686558] + RandomExtensions v0.4.4
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [4c63d2b9] + StatsFuns v1.5.2
⌅ [e134572f] + FLINT_jll v301.300.102+0
  [656ef2d0] + OpenBLAS32_jll v0.3.29+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] + GMP_jll v6.3.0+2
  [3a97d323] + MPFR_jll v4.2.2+0
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 4.67s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 12.78s



################################################################################
# Testing
#

     Testing ExactWrightFisher
      Status `/tmp/jl_XMDg72/Project.toml`
  [31c24e10] Distributions v0.25.122
  [8c1589a6] ExactWrightFisher v0.1.12
⌅ [2edaba10] Nemo v0.52.4
  [92933f4c] ProgressMeter v1.11.0
  [276daf66] SpecialFunctions v2.6.1
  [4c63d2b9] StatsFuns v1.5.2
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_XMDg72/Manifest.toml`
  [c3fe647b] AbstractAlgebra v0.47.6
  [66dad0bd] AliasTables v1.1.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [8c1589a6] ExactWrightFisher v0.1.12
  [1a297f60] FillArrays v1.15.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [e1d29d7a] Missings v1.2.0
⌅ [2edaba10] Nemo v0.52.4
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.36
  [21216c6a] Preferences v1.5.0
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [fb686558] RandomExtensions v0.4.4
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.9
  [4c63d2b9] StatsFuns v1.5.2
⌅ [e134572f] FLINT_jll v301.300.102+0
  [656ef2d0] OpenBLAS32_jll v0.3.29+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] GMP_jll v6.3.0+2
  [3a97d323] MPFR_jll v4.2.2+0
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
Testing...
WARNING: Use of Nemo.arb is deprecated, use ArbFieldElem instead.
  likely near /home/pkgeval/.julia/packages/ExactWrightFisher/M8zrC/src/helper_functions.jl:84
WARNING: Use of Nemo.arb is deprecated, use ArbFieldElem instead.
  likely near /home/pkgeval/.julia/packages/ExactWrightFisher/M8zrC/src/helper_functions.jl:134

  1 dependency had output during precompilation:
┌ ExactWrightFisher
│  [Output was shown above]
└  
Test Summary:    | Pass  Total  Time
helper functions |   15     15  3.9s
  4.641469 seconds (5.16 M allocations: 273.814 MiB, 1.90% gc time, 99.03% compilation time: 3% of which was recompilation)
Test Summary:                  | Pass  Total     Time
testing Ancestor(A∞) functions |   37     37  1m22.2s
 82.567331 seconds (202.74 M allocations: 10.702 GiB, 14.29% gc time, 7.45% compilation time)
Test Summary:                              | Pass  Total  Time
testing approximate Ancestor(A∞) functions |    3      3  0.1s
  0.185235 seconds (54.74 k allocations: 2.752 MiB, 90.68% compilation time)
kvec = [4, 5, 5, 6, 6, 6, 6, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 6, 5, 5, 5, 5, 5, 5]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-1122356852547.868845637122861097715065729303161555426610938684904225601574 +/- 2.48e-61], [1656805132233.661875391728083125338318932187371023550227053657153063630665 +/- 5.88e-61]], U = 0.07336635446929285
kvec = [5, 6, 6, 7, 7, 7, 7, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 7, 6, 6, 6, 6, 6, 6]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-379917688363.241798947470362389798366510231909011743080820398646015357710 +/- 2.45e-61], [685982935677.033005109117450030037015245789893404186135322326301660233328 +/- 2.77e-61]], U = 0.07336635446929285
kvec = [6, 7, 7, 8, 8, 8, 8, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 7, 7, 7, 7, 7, 7]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-87990209913.062948885012767415603710886921421299766113562405101213209007 +/- 2.83e-61], [191385650181.982735758774283273612954068520054087690938301257682129791722 +/- 2.43e-61]], U = 0.07336635446929285
kvec = [7, 8, 8, 9, 9, 9, 9, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 9, 8, 8, 8, 8, 8, 8]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-14304142309.770676405384573430695939487387763697265882200425305362184442 +/- 5.09e-61], [37030935678.188908517159546023453314231556132945252915614101750603237243 +/- 5.74e-61]], U = 0.07336635446929285
kvec = [8, 9, 9, 10, 10, 10, 10, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 10, 9, 9, 9, 9, 9, 9]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-1665781695.747302030334676883770430077386683065789036705613364053741996 +/- 3.04e-61], [5083551330.581034855432522251504929703688104865219347270337844880334020 +/- 2.60e-61]], U = 0.07336635446929285
kvec = [9, 10, 10, 11, 11, 11, 11, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 11, 10, 10, 10, 10, 10, 10]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-141274005.855485740280864478606062613199878708043781699234166748120438 +/- 5.51e-61], [504267300.322598074701738536120576517884450668413527657425605592875887 +/- 7.11e-61]], U = 0.07336635446929285
kvec = [10, 11, 11, 12, 12, 12, 12, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 12, 11, 11, 11, 11, 11, 11]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-8844405.774395850006394948875788191209074259859075347282999940901172 +/- 2.97e-61], [36687626.758827863245137070597511680781702497813695658110390485123038 +/- 2.82e-61]], U = 0.07336635446929285
kvec = [11, 12, 12, 13, 13, 13, 13, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 13, 12, 12, 12, 12, 12, 12]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-413352.702423903440207779504441333897254139126557444412692332424862 +/- 5.69e-61], [1981944.147099526107870140344768473956614952243222212314249108119777 +/- 2.69e-61]], U = 0.07336635446929285
kvec = [12, 13, 13, 14, 14, 14, 14, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 14, 13, 13, 13, 13, 13, 13]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-14558.486612199973416003836831555942644764339086290611552878067546 +/- 4.60e-61], [80325.671740279813298946328228137471587633481641712067263848742579 +/- 4.27e-61]], U = 0.07336635446929285
kvec = [13, 14, 14, 15, 15, 15, 15, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 15, 14, 14, 14, 14, 14, 14]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-388.984757233658758732222460538066511585069048562979566604731260 +/- 5.78e-61], [2464.351819474594209048811406595993722307290223782216575468158140 +/- 7.28e-61]], U = 0.07336635446929285
kvec = [14, 15, 15, 16, 16, 16, 16, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 16, 15, 15, 15, 15, 15, 15]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[-7.359395198187307781501220655887686354966919904057703527810047 +/- 4.41e-61], [58.238772657494741519683194652174969025723736285211834195817218 +/- 5.60e-61]], U = 0.07336635446929285
kvec = [15, 16, 16, 17, 17, 17, 17, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 18, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 17, 16, 16, 16, 16, 16, 16]
S_kvec_M_BOTH = Nemo.ArbFieldElem[[0.491632434503653238476497790980110369167234779351382580834744 +/- 4.56e-61], [1.651728605916412462968508104696263904327458125748122812085394 +/- 4.59e-61]], U = 0.07336635446929285
Test Summary:                                             | Pass  Total  Time
testing Wright-Fisher transition and simulation functions |   59     59  8.5s
  8.540544 seconds (7.98 M allocations: 424.614 MiB, 4.42% gc time, 89.10% compilation time)
Test Summary:                                                        | Pass  Total  Time
testing Wright-Fisher semi exact transition and simulation functions |    9      9  0.4s
  0.949283 seconds (695.04 k allocations: 35.740 MiB, 70.39% compilation time)
     Testing ExactWrightFisher tests passed 

Testing completed after 122.64s

PkgEval succeeded after 159.33s