Package evaluation to test CrystallographyCore on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T13:28:54.249 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.68s ################################################################################ # Installation # Installing CrystallographyCore... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [80545937] + CrystallographyCore v0.6.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [80545937] + CrystallographyCore v0.6.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [6ec83bb0] + StructEquality v2.1.0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 3.32s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.41s ################################################################################ # Testing # Testing CrystallographyCore Status `/tmp/jl_JwPhMu/Project.toml` [a963bdd2] AtomsBase v0.5.2 [80545937] CrystallographyCore v0.6.3 [90137ffa] StaticArrays v1.9.15 [6ec83bb0] StructEquality v2.1.0 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 ⌅ [c14bd059] UnitfulLinearAlgebra v0.3.7 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JwPhMu/Manifest.toml` [79e6a3ab] Adapt v4.4.0 [4fba245c] ArrayInterface v7.22.0 [a963bdd2] AtomsBase v0.5.2 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [80545937] CrystallographyCore v0.6.3 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [0703355e] DimensionalData v0.27.9 [411431e0] Extents v0.1.6 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.13 [41ab1584] InvertedIndices v1.3.1 [82899510] IteratorInterfaceExtensions v1.0.0 [bac558e1] OrderedCollections v1.8.1 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [3cdcf5f2] RecipesBase v1.3.4 [ae029012] Requires v1.3.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [6ec83bb0] StructEquality v2.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 ⌅ [c14bd059] UnitfulLinearAlgebra v0.3.7 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: UndefVarError: `X` not defined in `DimensionalData.Dimensions` Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). Note: the binding state changed since the error occurred (was: 11, now: 0). Hint: a global variable of this name also exists in DimensionalData.Dimensions.  - Also exported by DimensionalData (loaded but not imported in Main). Stacktrace:  [1] #s118#89  @ ~/.julia/packages/DimensionalData/VxDQB/src/Lookups/utils.jl:78 [inlined]  [2] var"#s118#89"(T::Any, ::Any, ::Any)  @ DimensionalData.Dimensions.Lookups ./none:0  [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any})  @ Base ./expr.jl:1832  [4] basetypeof  @ ~/.julia/packages/DimensionalData/VxDQB/src/Lookups/utils.jl:73 [inlined]  [5] _format(dim::DimensionalData.Dimensions.X{Vector{Symbol}}, axis::Base.OneTo{Int64})  @ DimensionalData.Dimensions ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:46  [6] map  @ ./tuple.jl:382 [inlined]  [7] format  @ ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:38 [inlined]  [8] format  @ ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:35 [inlined]  [9] DimensionalData.DimArray(data::Matrix{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; refdims::Tuple{}, name::DimensionalData.NoName, metadata::DimensionalData.Dimensions.Lookups.NoMetadata)  @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:410  [10] DimArray  @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:407 [inlined]  [11] zeros(::Type{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; kw::@Kwargs{})  @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:664  [12] zeros  @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:662 [inlined]  [13] zeros  @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:645 [inlined]  [14] zeros(dim1::DimensionalData.Dimensions.X{Vector{Symbol}}, dims::DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}})  @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:644  [15] macro expansion  @ ~/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:7 [inlined]  [16] macro expansion  @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]  [17] top-level scope  @ ~/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:85  [18] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [19] top-level scope  @ ~/.julia/packages/DimensionalData/VxDQB/src/DimensionalData.jl:108  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [21] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [22] top-level scope  @ stdin:5  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [25] include_string  @ ./loading.jl:3102 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [27] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:1 in expression starting at /home/pkgeval/.julia/packages/DimensionalData/VxDQB/src/DimensionalData.jl:1 in expression starting at stdin:5 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("0703355e-b756-11e9-17c0-8b28908087d0"), "DimensionalData") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/UnitfulLinearAlgebra/hSeNC/src/UnitfulLinearAlgebra.jl:5  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [18] include_string  @ ./loading.jl:3102 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/UnitfulLinearAlgebra/hSeNC/src/UnitfulLinearAlgebra.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ UnitfulLinearAlgebra │ [Output was shown above] └ ┌ DimensionalData │ ERROR: LoadError: UndefVarError: `X` not defined in `DimensionalData.Dimensions` │ Suggestion: define the const at top-level before running function that uses it (stricter Julia v1.12+ rule). │ Note: the binding state changed since the error occurred (was: 11, now: 0). │ Hint: a global variable of this name also exists in DimensionalData.Dimensions. │ - Also exported by DimensionalData (loaded but not imported in Main). │ Stacktrace: │ [1] #s118#89 │ @ ~/.julia/packages/DimensionalData/VxDQB/src/Lookups/utils.jl:78 [inlined] │ [2] var"#s118#89"(T::Any, ::Any, ::Any) │ @ DimensionalData.Dimensions.Lookups ./none:0 │ [3] (::Core.GeneratedFunctionStub)(::UInt64, ::Method, ::Any, ::Vararg{Any}) │ @ Base ./expr.jl:1832 │ [4] basetypeof │ @ ~/.julia/packages/DimensionalData/VxDQB/src/Lookups/utils.jl:73 [inlined] │ [5] _format(dim::DimensionalData.Dimensions.X{Vector{Symbol}}, axis::Base.OneTo{Int64}) │ @ DimensionalData.Dimensions ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:46 │ [6] map │ @ ./tuple.jl:382 [inlined] │ [7] format │ @ ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:38 [inlined] │ [8] format │ @ ~/.julia/packages/DimensionalData/VxDQB/src/Dimensions/format.jl:35 [inlined] │ [9] DimensionalData.DimArray(data::Matrix{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; refdims::Tuple{}, name::DimensionalData.NoName, metadata::DimensionalData.Dimensions.Lookups.NoMetadata) │ @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:410 │ [10] DimArray │ @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:407 [inlined] │ [11] zeros(::Type{Float64}, dims::Tuple{DimensionalData.Dimensions.X{Vector{Symbol}}, DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}}; kw::@Kwargs{}) │ @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:664 │ [12] zeros │ @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:662 [inlined] │ [13] zeros │ @ ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:645 [inlined] │ [14] zeros(dim1::DimensionalData.Dimensions.X{Vector{Symbol}}, dims::DimensionalData.Dimensions.Y{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}}) │ @ DimensionalData ~/.julia/packages/DimensionalData/VxDQB/src/array/array.jl:644 │ [15] macro expansion │ @ ~/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:7 [inlined] │ [16] macro expansion │ @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] │ [17] top-level scope │ @ ~/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:85 │ [18] include(mapexpr::Function, mod::Module, _path::String) │ @ Base ./Base.jl:310 │ [19] top-level scope │ @ ~/.julia/packages/DimensionalData/VxDQB/src/DimensionalData.jl:108 │ [20] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [21] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) │ @ Base ./loading.jl:3250 │ [22] top-level scope │ @ stdin:5 │ [23] eval(m::Module, e::Any) │ @ Core ./boot.jl:489 │ [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) │ @ Base ./loading.jl:3092 │ [25] include_string │ @ ./loading.jl:3102 [inlined] │ [26] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:342 │ [27] _start() │ @ Base ./client.jl:577 │ in expression starting at /home/pkgeval/.julia/packages/DimensionalData/VxDQB/src/precompile.jl:1 │ in expression starting at /home/pkgeval/.julia/packages/DimensionalData/VxDQB/src/DimensionalData.jl:1 │ in expression starting at stdin:5 └ CrystallographyCore.jl: Error During Test at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:4 Got exception outside of a @test LoadError: The following 2 packages failed to precompile: UnitfulLinearAlgebra Failed to precompile UnitfulLinearAlgebra [c14bd059-d406-4571-8f61-9bd20e53c30b] to "/home/pkgeval/.julia/compiled/v1.14/UnitfulLinearAlgebra/jl_R8cFMp" (ProcessExited(1)). DimensionalData Failed to precompile DimensionalData [0703355e-b756-11e9-17c0-8b28908087d0] to "/home/pkgeval/.julia/compiled/v1.14/DimensionalData/jl_IutixJ" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/test/AtomsBase.jl:3 Test Summary: | Pass Error Total Time CrystallographyCore.jl | 42 1 43 52.3s Test `isbits` | 2 2 0.9s Constructing `Lattice`s | 17 17 11.2s Test broadcasting for lattices | 8 8 2.8s Test broadcasting for reciprocal lattices | 3 3 1.1s Test `eachatom` | 12 12 0.7s RNG of the outermost testset: Random.Xoshiro(0x272f523f93021b7c, 0xbd084804a5297564, 0x3c71988ee685c96d, 0x41c0b86ed155dfa2, 0x58c5301fbc748837) ERROR: LoadError: Some tests did not pass: 42 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/CrystallographyCore/ryJor/test/runtests.jl:4 Testing failed after 67.51s ERROR: LoadError: Package CrystallographyCore errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 109.82s: package fails to precompile