Package evaluation to test CovarianceMatrices on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T15:15:51.982 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.59s ################################################################################ # Installation # Installing CovarianceMatrices... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [60f91f6f] + CovarianceMatrices v0.30.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [0a1fb500] + BlockDiagonals v0.2.0 [861a8166] + Combinatorics v1.1.0 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [60f91f6f] + CovarianceMatrices v0.30.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [6407cd72] + GroupedArrays v0.3.4 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [b946abbf] + NaNStatistics v0.6.54 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [ae029012] + Requires v1.3.1 [431bcebd] + SciMLPublic v1.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.9 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 3.78s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.47s ################################################################################ # Testing # Testing CovarianceMatrices Status `/tmp/jl_Mq6CB3/Project.toml` [4c88cf16] Aqua v0.8.14 [0a1fb500] BlockDiagonals v0.2.0 [336ed68f] CSV v0.10.15 [861a8166] Combinatorics v1.1.0 [60f91f6f] CovarianceMatrices v0.30.3 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [38e38edf] GLM v1.9.0 [6407cd72] GroupedArrays v0.3.4 [682c06a0] JSON v1.3.0 [b946abbf] NaNStatistics v0.6.54 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Mq6CB3/Manifest.toml` [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [4fba245c] ArrayInterface v7.22.0 [0a1fb500] BlockDiagonals v0.2.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.1.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [60f91f6f] CovarianceMatrices v0.30.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [38e38edf] GLM v1.9.0 [6407cd72] GroupedArrays v0.3.4 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [b946abbf] NaNStatistics v0.6.54 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.9 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... Test Summary: | Pass Total Time Aqua.jl | 10 10 56.5s Test Summary: | Pass Total Time Core Functionality Tests | 88 88 1m20.2s Test Summary: | Pass Total Time GLM Integration Tests | 194 194 2m00.2s Test Summary: | Pass Total Time Model Interface Validation ✅ | 6 6 0.4s Test Summary: | Pass Total Time Variance Form Validation ✅ | 1 1 0.0s Test Summary: | Pass Total Time Type System Validation ✅ | 34 34 0.0s Test Summary: | Pass Total Time EWC Estimator Coverage ✅ | 16 16 1.0s Test Summary: | Pass Total Time Unified API Comprehensive Tests ✅ | 7 7 6.2s Test Summary: | Pass Total Time Error Handling Edge Cases ✅ | 5 5 0.2s Test Summary: | Pass Total Time Interface Method Coverage ✅ | 4 4 0.3s Test Summary: | Pass Total Time Additional Type Coverage ✅ | 123 123 12.5s Test Summary: | Pass Total Time Advanced Error Conditions ✅ | 4 4 0.1s Test Summary: | Pass Total Time Performance and Numerical Stability ✅ | 15 15 1.4s Test Summary: | Pass Total Time Debug Inversions and Tolerance Control ✅ | 16 16 2.3s Test Summary: | Pass Total Time VARHAC Comprehensive Tests ✅ | 64 64 19.8s ====================================================================== ✅ VARHAC comprehensive tests completed successfully! 📊 Constructor functionality verified 🔧 Both aVar and vcov APIs working correctly 📈 Mathematical properties validated 🚀 Performance and stability confirmed 🐛 Edge cases and error conditions tested ====================================================================== === CASE 1 COMPARISON === FORTRAN AAA matrix: 5×5 Matrix{Float64}: 6.33318 1.81907 -1.64378 -1.29544 -0.246326 1.81907 2.24341 1.10983 -0.645952 -0.295465 -1.64378 1.10983 3.04028 -0.380581 0.395125 -1.29544 -0.645952 -0.380581 1.16922 -0.966706 -0.246326 -0.295465 0.395125 -0.966706 1.51311 Julia result: 5×5 Matrix{Float64}: 6.33317 1.81907 -1.64378 -1.29544 -0.246317 1.81907 2.24341 1.10983 -0.645951 -0.295466 -1.64378 1.10983 3.04027 -0.380578 0.39512 -1.29544 -0.645951 -0.380578 1.16921 -0.9667 -0.246317 -0.295466 0.39512 -0.9667 1.5131 Difference: 5×5 Matrix{Float64}: -6.35276e-6 1.13905e-6 4.40413e-6 -4.33621e-6 8.58379e-6 1.13905e-6 -3.63798e-7 -7.06286e-7 5.44462e-7 -9.03918e-7 4.40413e-6 -7.06286e-7 -2.64787e-6 2.90819e-6 -5.53121e-6 -4.33621e-6 5.44462e-7 2.90819e-6 -2.57139e-6 5.7431e-6 8.58379e-6 -9.03918e-7 -5.53121e-6 5.7431e-6 -1.10412e-5 Maximum absolute difference: 1.1041224021068885e-5 === CASE 2 COMPARISON === FORTRAN AAA matrix: 5×5 Matrix{Float64}: 6.3925 2.12382 -1.16111 -1.33082 -0.563325 2.12382 1.9994 0.858124 -0.537962 -0.526958 -1.16111 0.858124 2.58645 -0.256592 0.220206 -1.33082 -0.537962 -0.256592 1.14302 -0.984911 -0.563325 -0.526958 0.220206 -0.984911 1.89096 Julia result: 5×5 Matrix{Float64}: 6.3925 2.12382 -1.16111 -1.33083 -0.563316 2.12382 1.9994 0.858124 -0.537962 -0.526958 -1.16111 0.858124 2.58645 -0.25659 0.220201 -1.33083 -0.537962 -0.25659 1.14302 -0.984905 -0.563316 -0.526958 0.220201 -0.984905 1.89095 Maximum absolute difference: 1.1178681578849492e-5 === CASE 3 COMPARISON === FORTRAN AAA matrix: 5×5 Matrix{Float64}: 6.09774 1.74942 -1.63595 -1.12078 -0.379326 1.74942 2.22336 1.10947 -0.593493 -0.335472 -1.63595 1.10947 3.05306 -0.390253 0.40278 -1.12078 -0.593493 -0.390253 1.0408 -0.869 -0.379326 -0.335472 0.40278 -0.869 1.43878 Julia result: 5×5 Matrix{Float64}: 6.09773 1.74942 -1.63595 -1.12078 -0.379318 1.74942 2.22336 1.10947 -0.593492 -0.335473 -1.63595 1.10947 3.05306 -0.39025 0.402774 -1.12078 -0.593492 -0.39025 1.04079 -0.868994 -0.379318 -0.335473 0.402774 -0.868994 1.43877 Maximum absolute difference: 1.0675573291152318e-5 === CASE 4 COMPARISON === FORTRAN AAA matrix: 5×5 Matrix{Float64}: 6.48023 1.90942 -1.66966 -1.35001 -0.227949 1.90942 2.29993 1.09349 -0.67913 -0.284979 -1.66966 1.09349 3.04447 -0.371697 0.392704 -1.35001 -0.67913 -0.371697 1.1887 -0.972816 -0.227949 -0.284979 0.392704 -0.972816 1.51482 Julia result: 5×5 Matrix{Float64}: 6.46132 1.89802 -1.66596 -1.34157 -0.232231 1.89802 2.29306 1.09572 -0.674046 -0.287559 -1.66596 1.09572 3.04375 -0.373351 0.393543 -1.34157 -0.674046 -0.373351 1.18494 -0.970905 -0.232231 -0.287559 0.393543 -0.970905 1.51385 Maximum absolute difference: 0.018904742956054932 Relative error: 0.018784255237728673 === COMPREHENSIVE aVar API VALIDATION === ✅ AIC + demean: Max diff = 1.1e-5 ✅ BIC + demean: Max diff = 1.1e-5 ✅ Fixed + demean: Max diff = 1.1e-5 ✅ AIC + no demean: Max diff = 0.018905 === TYPE STABILITY VALIDATION === ✅ AIC+SameLags: Type stable Float32 ✓ ✅ BIC+SameLags: Type stable Float32 ✓ ✅ Fixed+FixedLags: Type stable Float32 ✓ ✅ AIC+AutoLags: Type stable Float32 ✓ ✅ Constructor type parameters working correctly ✅ Type promotion behavior correct === EDGE CASES AND ROBUSTNESS === ✅ Edge cases handled robustly Test Summary: | Pass Total Time VARHAC FORTRAN Validation 🔥 | 56 56 8.7s Test Summary: | Pass Total Time nancov | 4 4 1.8s ====================================================================== 🔥 VARHAC FORTRAN Validation Results Testing against legacy FORTRAN reference implementation ✅ aVar API fully validated against FORTRAN ✅ Type stability verified with Float32/Float64 ✅ Edge cases and robustness confirmed ====================================================================== Test Summary: | Pass Total Time Smoothed Moments Tests | 91 91 1.3s EWC coverage rate: 91.4% EWC SE: 0.0842, HAC SE: 0.0726 Test Summary: | Pass Total Time EWC Monte Carlo Coverage Tests | 14 14 3.4s ====================================================================== ✅ All CovarianceMatrices.jl tests completed successfully! ✨ Aqua.jl quality assurance checks passed 📊 Core functionality verified 🔧 Interface and API coverage complete 📈 Example models working correctly 🚀 New unified API fully tested 🐛 Debug and tolerance features validated 📉 VARHAC implementation comprehensive 🔥 VARHAC FORTRAN validation PASSED! 🌊 SmoothedMoments (Smith's method) validated 📐 EWC Monte Carlo coverage validated ====================================================================== Testing CovarianceMatrices tests passed Testing completed after 535.38s PkgEval succeeded after 602.72s