Package evaluation to test ClusterDepth on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T14:09:48.810


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.48s


################################################################################
# Installation
#

Installing ClusterDepth...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [c8d8bbfa] + ClusterDepth v0.2.7
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [c8d8bbfa] + ClusterDepth v0.2.7
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [ffbed154] + DocStringExtensions v0.9.5
  [92d709cd] + IrrationalConstants v0.2.6
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [43287f4e] + PtrArrays v1.3.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [2913bbd2] + StatsBase v0.34.9
  [56f22d72] + Artifacts v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 3.72s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.19s



################################################################################
# Testing
#

     Testing ClusterDepth
      Status `/tmp/jl_LXTzLQ/Project.toml`
  [c8d8bbfa] ClusterDepth v0.2.7
⌃ [09f84164] HypothesisTests v0.10.13
⌃ [860ef19b] StableRNGs v1.0.0
⌃ [2913bbd2] StatsBase v0.33.21
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_LXTzLQ/Manifest.toml`
⌃ [7d9f7c33] Accessors v0.1.42
  [c8d8bbfa] ClusterDepth v0.2.7
⌃ [861a8166] Combinatorics v1.0.3
  [38540f10] CommonSolve v0.2.4
⌃ [34da2185] Compat v4.5.0
  [a33af91c] CompositionsBase v0.1.2
  [187b0558] ConstructionBase v1.6.0
⌃ [9a962f9c] DataAPI v1.14.0
⌅ [864edb3b] DataStructures v0.18.13
⌃ [31c24e10] Distributions v0.25.89
⌃ [ffbed154] DocStringExtensions v0.9.3
⌃ [1a297f60] FillArrays v1.14.0
  [34004b35] HypergeometricFunctions v0.3.28
⌃ [09f84164] HypothesisTests v0.10.13
⌃ [3587e190] InverseFunctions v0.1.8
⌅ [92d709cd] IrrationalConstants v0.1.1
  [692b3bcd] JLLWrappers v1.7.1
⌃ [2ab3a3ac] LogExpFunctions v0.3.20
  [1914dd2f] MacroTools v0.5.16
⌃ [e1d29d7a] Missings v1.1.0
⌃ [bac558e1] OrderedCollections v1.4.1
⌃ [90014a1f] PDMats v0.11.35
  [21216c6a] Preferences v1.5.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
⌅ [79098fc4] Rmath v0.7.1
  [f2b01f46] Roots v2.2.10
⌃ [a2af1166] SortingAlgorithms v1.1.0
⌃ [276daf66] SpecialFunctions v2.5.1
⌃ [860ef19b] StableRNGs v1.0.0
  [10745b16] Statistics v1.11.1
⌃ [82ae8749] StatsAPI v1.5.0
⌃ [2913bbd2] StatsBase v0.33.21
⌃ [4c63d2b9] StatsFuns v1.3.1
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
⌅ [f50d1b31] Rmath_jll v0.4.3+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [e37daf67] LibGit2_jll v1.9.2+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [8e850b90] libblastrampoline_jll v5.15.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for ClusterDepth [c8d8bbfa-f476-4995-adff-2987f04015d1]
│   exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: The call to compilecache failed to create a usable precompiled cache file for StatsBase [2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91]
│   exception = Required dependency Base.PkgId(Base.UUID("10745b16-79ce-11e8-11f9-7d13ad32a3b2"), "Statistics") failed to load from a cache file.
└ @ Base loading.jl:2891
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
┌ Warning: Your data shows a cluster that starts before the first sample, or ends after the last sample. There exists a fundamental limit in the ClusterDepth method, that the clusterdepth for such a cluster cannot be determined. Maybe you can extend the epoch to include more samples? This 'half'-cluster will be ignored and cannot become significant
└ @ ClusterDepth ~/.julia/packages/ClusterDepth/TcpS6/src/cluster.jl:62
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/Distributions/rWYRC/src/Distributions.jl:3
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Distributions/rWYRC/src/Distributions.jl:1
in expression starting at stdin:5
ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("31c24e10-a181-5473-b8eb-7969acd0382f"), "Distributions") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] __require_prelocked(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2813
  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2665
  [4] macro expansion
    @ ./loading.jl:2593 [inlined]
  [5] macro expansion
    @ ./lock.jl:376 [inlined]
  [6] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2557
  [7] require
    @ ./loading.jl:2533 [inlined]
  [8] eval_import_path
    @ ./module.jl:36 [inlined]
  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
    @ Base ./module.jl:60
 [10] _eval_using
    @ ./module.jl:137 [inlined]
 [11] _eval_using(to::Module, path::Expr)
    @ Base ./module.jl:137
 [12] top-level scope
    @ ~/.julia/packages/HypothesisTests/ySsHQ/src/HypothesisTests.jl:28
 [13] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3250
 [15] top-level scope
    @ stdin:5
 [16] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3092
 [18] include_string
    @ ./loading.jl:3102 [inlined]
 [19] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [20] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/HypothesisTests/ySsHQ/src/HypothesisTests.jl:25
in expression starting at stdin:5

  2 dependencies had output during precompilation:
┌ Distributions
│  ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"), "StatsBase") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0)
│  Stacktrace:
│    [1] error(s::String)
│      @ Base ./error.jl:44
│    [2] __require_prelocked(pkg::Base.PkgId, env::String)
│      @ Base ./loading.jl:2813
│    [3] _require_prelocked(uuidkey::Base.PkgId, env::String)
│      @ Base ./loading.jl:2665
│    [4] macro expansion
│      @ ./loading.jl:2593 [inlined]
│    [5] macro expansion
│      @ ./lock.jl:376 [inlined]
│    [6] __require(into::Module, mod::Symbol)
│      @ Base ./loading.jl:2557
│    [7] require
│      @ ./loading.jl:2533 [inlined]
│    [8] eval_import_path
│      @ ./module.jl:36 [inlined]
│    [9] eval_import_path_all(at::Module, path::Expr, keyword::String)
│      @ Base ./module.jl:60
│   [10] _eval_using
│      @ ./module.jl:137 [inlined]
│   [11] _eval_using(to::Module, path::Expr)
│      @ Base ./module.jl:137
│   [12] top-level scope
│      @ ~/.julia/packages/Distributions/rWYRC/src/Distributions.jl:3
│   [13] include(mod::Module, _path::String)
│      @ Base ./Base.jl:309
│   [14] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
│      @ Base ./loading.jl:3250
│   [15] top-level scope
│      @ stdin:5
│   [16] eval(m::Module, e::Any)
│      @ Core ./boot.jl:489
│   [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
│      @ Base ./loading.jl:3092
│   [18] include_string
│      @ ./loading.jl:3102 [inlined]
│   [19] exec_options(opts::Base.JLOptions)
│      @ Base ./client.jl:342
│   [20] _start()
│      @ Base ./client.jl:577
│  in expression starting at /home/pkgeval/.julia/packages/Distributions/rWYRC/src/Distributions.jl:1
│  in expression starting at stdin:5
└  
┌ HypothesisTests
│  [Output was shown above]
└  

ClusterDepth.jl: Error During Test at /home/pkgeval/.julia/packages/ClusterDepth/TcpS6/test/runtests.jl:4
  Got exception outside of a @test
  LoadError: The following 2 packages failed to precompile:
  Distributions 
  Failed to precompile Distributions [31c24e10-a181-5473-b8eb-7969acd0382f] to "/home/pkgeval/.julia/compiled/v1.14/Distributions/jl_IRvQni" (ProcessExited(1)).
  HypothesisTests 
  Failed to precompile HypothesisTests [09f84164-cd44-5f33-b23f-e6b0d136a0d5] to "/home/pkgeval/.julia/compiled/v1.14/HypothesisTests/jl_GTnmMB" (ProcessExited(1)).
  in expression starting at /home/pkgeval/.julia/packages/ClusterDepth/TcpS6/test/utils.jl:1
Test Summary:                   | Pass  Error  Total     Time
ClusterDepth.jl                 |   33      1     34  1m55.2s
  troendle                      |   18            18    21.2s
  cluster                       |    6             6     0.9s
  Tests for 2D data             |    1             1     6.4s
  Tests for 3D data             |    1             1    10.3s
  Test sidefun                  |    4             4     1.1s
  Test warning clusterbegin/end |    2             2     0.3s
  sparse matrix size            |    1             1     0.7s
RNG of the outermost testset: Xoshiro(0x5ac4789ebd459bb0, 0x522ab2e5fe1a91b9, 0x2ebd5ec9e57bb790, 0x5cb1b0b8319596a2, 0xc3d3404b8e170519)
ERROR: LoadError: Some tests did not pass: 33 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/ClusterDepth/TcpS6/test/runtests.jl:4

Testing failed after 173.14s

ERROR: LoadError: Package ClusterDepth errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3067
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2916 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:237
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:228

PkgEval failed after 216.74s: package fails to precompile