Package evaluation to test COBREXA on Julia 1.14.0-DEV.1367 (f40b117265*) started at 2025-12-16T17:30:41.321 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 9.22s ################################################################################ # Installation # Installing COBREXA... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [babc4406] + COBREXA v2.9.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [babc4406] + COBREXA v2.9.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [f6369f11] + ForwardDiff v1.3.0 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.3 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.48.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.0 [3bb67fe8] + TranscodingStreams v0.11.3 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.2+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.54s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.06s ################################################################################ # Testing # Testing COBREXA Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_8PPIwb/Project.toml` ⌅ [4c88cf16] + Aqua v0.7.4 [babc4406] + COBREXA v2.9.1 [336ed68f] + CSV v0.10.15 ⌅ [61c947e1] + Clarabel v0.6.0 [87dc4568] + HiGHS v1.20.1 [475c1105] + JSONFBCModels v1.0.1 [3e8f9d1a] + SBMLFBCModels v1.1.1 [6dd1b50a] + Tulip v0.9.8 Updating `/tmp/jl_8PPIwb/Manifest.toml` [14f7f29c] + AMD v0.5.3 ⌅ [4c88cf16] + Aqua v0.7.4 [babc4406] + COBREXA v2.9.1 [336ed68f] + CSV v0.10.15 ⌅ [61c947e1] + Clarabel v0.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [e2ba6199] + ExprTools v0.1.10 [9aa1b823] + FastClosures v0.3.2 [48062228] + FilePathsBase v0.9.24 [14197337] + GenericLinearAlgebra v0.3.19 [87dc4568] + HiGHS v1.20.1 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [682c06a0] ↓ JSON v1.3.0 ⇒ v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [ba0b0d4f] + Krylov v0.10.3 [40e66cde] + LDLFactorizations v0.10.1 [5c8ed15e] + LinearOperators v2.11.0 [8c4f8055] + MathOptIIS v0.1.1 [3bbf5609] + PikaParser v0.6.1 [2dfb63ee] + PooledArrays v1.4.3 [bfc457fd] + QDLDL v0.4.1 [10f199a5] + QPSReader v0.2.1 [ae029012] + Requires v1.3.1 [e5567a89] + SBML v1.6.0 [3e8f9d1a] + SBMLFBCModels v1.1.1 [91c51154] + SentinelArrays v1.4.8 [66db9d55] + SnoopPrecompile v1.0.3 [90137ffa] + StaticArrays v1.9.15 [ec057cc2] - StructUtils v2.6.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [6dd1b50a] + Tulip v0.9.8 [1986cc42] + Unitful v1.27.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [8fd58aa0] + HiGHS_jll v1.12.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [9fa8497b] + Future v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_8PPIwb/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 ⌅ [4c88cf16] Aqua v0.7.4 [babc4406] COBREXA v2.9.1 [336ed68f] CSV v0.10.15 ⌅ [61c947e1] Clarabel v0.6.0 [5515826b] ConstraintTrees v1.11.0 [ffbed154] DocStringExtensions v0.9.5 [87dc4568] HiGHS v1.20.1 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.3 [3e8f9d1a] SBMLFBCModels v1.1.1 [860ef19b] StableRNGs v1.0.4 [6dd1b50a] Tulip v0.9.8 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.14.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_8PPIwb/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 ⌅ [4c88cf16] Aqua v0.7.4 [6e4b80f9] BenchmarkTools v1.6.3 [babc4406] COBREXA v2.9.1 [336ed68f] CSV v0.10.15 ⌅ [61c947e1] Clarabel v0.6.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [9aa1b823] FastClosures v0.3.2 [48062228] FilePathsBase v0.9.24 [f6369f11] ForwardDiff v1.3.0 [14197337] GenericLinearAlgebra v0.3.19 [87dc4568] HiGHS v1.20.1 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.3 [ba0b0d4f] Krylov v0.10.3 [40e66cde] LDLFactorizations v0.10.1 [5c8ed15e] LinearOperators v2.11.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.48.0 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [bfc457fd] QDLDL v0.4.1 [10f199a5] QPSReader v0.2.1 [ae029012] Requires v1.3.1 [e5567a89] SBML v1.6.0 [3e8f9d1a] SBMLFBCModels v1.1.1 [91c51154] SentinelArrays v1.4.8 [66db9d55] SnoopPrecompile v1.0.3 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [6dd1b50a] Tulip v0.9.8 [1986cc42] Unitful v1.27.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [8fd58aa0] HiGHS_jll v1.12.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.2+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: misc.jl done in 47.13s {"genes":[{"annotation":{"ncbigi":["16128002"],"sbo":["SBO:0000243"],"ecogene":["EG11556"],"asap":["... 7JL5Model |“)Œ&i!‚ø@‰ú=OZAbstractFBCModelsCanonicalModelD5DictNžD!Reaction... {"genes":[{"annotation":{"ncbigi":["16128002"],"ecogene":["EG11556"],"ncbigene":["944748"],"asap":["... [ Info: ../docs/src/examples/01-loading-and-saving.jl done in 52.04s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/02a-flux-balance-analysis.jl done in 6.21s [ Info: using cached `e_coli_core.json' nothing Problem info Name : Constraints : 262 Variables : 95 Non-zeros : 550 Reduced problem info Constraints : 62 (removed 200) Variables : 81 (removed 14) Non-zeros : 325 (removed 225) Presolve time : 0.000s Optimizer info (HSD) Constraints : 62 Variables : 81 RHS : [+0.00e+00, +0.00e+00] Lower bounds : [-2.32e+03, +1.25e+01] Upper bounds : [+0.00e+00, +1.16e+04] Linear solver options Arithmetic : Float64 Backend : CHOLMOD System : Augmented system (K2) Itn PObj DObj PFeas DFeas GFeas Mu Time 0 -0.0000000e+00 +1.7686535e+05 1.16e+04 8.59e-02 1.77e+05 1.0e+00 1.52 Solver exited with status Trm_TimeLimit [ Info: ../docs/src/examples/02b-optimizer-parameters.jl done in 60.61s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/02c-model-modifications.jl done in 4.32s [ Info: using cached `e_coli_core.json' nothing[ Info: ../docs/src/examples/02d-constraint-modifications.jl done in 0.73s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/03a-flux-variability-analysis.jl done in 76.94s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/03b-parsimonious-flux-balance.jl done in 100.02s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/03c-envelopes.jl done in 14.18s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/03d-unidirectional.jl done in 6.48s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/03e-min-exchange.jl done in 9.09s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/04-community-models.jl done in 77.36s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/04a-composition-models.jl done in 9.29s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/05a-minimization-of-metabolic-adjustment.jl done in 4.78s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/05b-enzyme-constrained-models.jl done in 16.91s [ Info: using cached `e_coli_core.json' [ Info: ../docs/src/examples/05c-mmdf.jl done in 6.88s [ Info: using cached `e_coli_core.json' [9] signal 11 (1): Segmentation fault in expression starting at /home/pkgeval/.julia/packages/COBREXA/9nHZI/docs/src/examples/05d-loopless-models.jl:46 _ZN15HighsSplitDeque10WorkerBunk11publishWorkEPS_ at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) _ZN18HighsMipSolverData16evaluateRootNodeEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) _ZN14HighsMipSolver3runEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) _ZN5Highs12callSolveMipEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) _ZN5Highs13optimizeModelEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) _ZN5Highs3runEv at /home/pkgeval/.julia/artifacts/33492bbb3ce9a984f08ca11ba891b9f59c0c00f4/lib/libhighs.so (unknown line) Highs_run at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/gen/libhighs.jl:328 [inlined] #46 at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 [inlined] disable_sigint at ./c.jl:167 [inlined] optimize! at /home/pkgeval/.julia/packages/HiGHS/yay5V/src/MOI_wrapper.jl:2258 optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Bridges/bridge_optimizer.jl:367 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/MathOptInterface.jl:122 [inlined] optimize! at /home/pkgeval/.julia/packages/MathOptInterface/03Qtw/src/Utilities/cachingoptimizer.jl:370 unknown function (ip: 0x7e6e3bdc5f52) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #optimize!#96 at /home/pkgeval/.julia/packages/JuMP/e83v9/src/optimizer_interface.jl:609 optimize! at /home/pkgeval/.julia/packages/JuMP/e83v9/src/optimizer_interface.jl:560 [inlined] #optimized_model#10 at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/solver.jl:210 optimized_model at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/solver.jl:209 [inlined] #optimized_values#56 at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/analysis/solver.jl:41 optimized_values at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/analysis/solver.jl:28 unknown function (ip: 0x7e6e3bdc0e27) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #frontend_optimized_values#19 at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/analysis/frontend.jl:38 frontend_optimized_values at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/analysis/frontend.jl:24 [inlined] #loopless_flux_balance_analysis#416 at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/frontend/loopless.jl:84 [inlined] loopless_flux_balance_analysis at /home/pkgeval/.julia/packages/COBREXA/9nHZI/src/frontend/loopless.jl:84 unknown function (ip: 0x7e6e3b19bcd6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:757 jl_eval_toplevel_stmts at /source/src/toplevel.c:600 jl_toplevel_eval_flex at /source/src/toplevel.c:698 ijl_toplevel_eval at /source/src/toplevel.c:769 ijl_toplevel_eval_in at /source/src/toplevel.c:814 eval at ./boot.jl:489 include_string at ./loading.jl:3092 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3152 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 [inlined] macro expansion at ./timing.jl:502 [inlined] run_test_file at /home/pkgeval/.julia/packages/COBREXA/9nHZI/test/runtests.jl:34 [inlined] macro expansion at /home/pkgeval/.julia/packages/COBREXA/9nHZI/test/runtests.jl:41 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] run_doc_examples at /home/pkgeval/.julia/packages/COBREXA/9nHZI/test/runtests.jl:41 unknown function (ip: 0x7e6e3ca58a8f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:757 jl_eval_toplevel_stmts at /source/src/toplevel.c:600 jl_toplevel_eval_flex at /source/src/toplevel.c:698 ijl_toplevel_eval at /source/src/toplevel.c:769 ijl_toplevel_eval_in at /source/src/toplevel.c:814 eval at ./boot.jl:489 include_string at ./loading.jl:3092 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3152 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_49502.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:757 jl_eval_toplevel_stmts at /source/src/toplevel.c:600 jl_toplevel_eval_flex at /source/src/toplevel.c:698 ijl_toplevel_eval at /source/src/toplevel.c:769 ijl_toplevel_eval_in at /source/src/toplevel.c:814 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_57034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2285 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e6e6c24e249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S Allocations: 200270624 (Pool: 200268404; Big: 2220); GC: 60 Testing failed after 577.48s ERROR: LoadError: Package COBREXA errored during testing (received signal: 11) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3053 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2902 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval crashed after 848.96s: a segmentation fault happened