Package evaluation to test CIGARStrings on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T12:22:34.519


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.62s


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# Installation
#

Installing CIGARStrings...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [e5b51f81] + CIGARStrings v0.1.4
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [e5b51f81] + CIGARStrings v0.1.4
  [a791c907] + MemoryViews v0.3.6

Installation completed after 0.88s


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# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 13.16s



################################################################################
# Testing
#

     Testing CIGARStrings
      Status `/tmp/jl_TS43al/Project.toml`
  [e5b51f81] CIGARStrings v0.1.4
  [3372ea36] FormatSpecimens v1.4.0
  [a791c907] MemoryViews v0.3.6
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_TS43al/Manifest.toml`
  [e5b51f81] CIGARStrings v0.1.4
  [3372ea36] FormatSpecimens v1.4.0
  [a791c907] MemoryViews v0.3.6
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
     Testing Running tests...
Test Summary: | Pass  Total  Time
Instantiation |   56     56  1.5s
Test Summary: | Pass  Total  Time
Iteration     |    2      2  0.2s
Test Summary: | Pass  Total  Time
Writing       |   12     12  0.0s
Test Summary:            | Pass  Total  Time
Query / ref / aln length |   10     10  0.1s
Test Summary: | Pass  Total  Time
Count matches |   26     26  0.1s
Test Summary: | Pass  Total  Time
aln identity  |   18     18  0.0s
Test Summary:       | Pass  Total  Time
Translate positions |  174    174  3.4s
Test Summary:      | Pass  Total  Time
BAMCIGAR specifics |   36     36  0.3s
     Testing CIGARStrings tests passed 

Testing completed after 17.33s

PkgEval succeeded after 50.9s