Package evaluation to test BioSequences on Julia 1.14.0-DEV.1372 (893635dc59*) started at 2025-12-16T12:57:33.298


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.14`

Set-up completed after 9.26s


################################################################################
# Installation
#

Installing BioSequences...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [7e6ae17a] + BioSequences v3.5.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [7e6ae17a] + BioSequences v3.5.0
  [3c28c6f8] + BioSymbols v5.2.0
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [7200193e] + Twiddle v1.1.2
  [ade2ca70] + Dates v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0

Installation completed after 3.65s


################################################################################
# Precompilation
#

ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:10
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/precompile.jl:6

caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull)
The function `setindex!` exists, but no method is defined for this combination of argument types.
Stacktrace:
 [1] top-level scope
   @ /PkgEval.jl/scripts/precompile.jl:7
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:344
 [4] _start()
   @ Base ./client.jl:577

Precompilation failed after 12.95s



################################################################################
# Testing
#

     Testing BioSequences
      Status `/tmp/jl_gbSBQk/Project.toml`
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [aea7be01] PrecompileTools v1.3.3
  [860ef19b] StableRNGs v1.0.4
  [2913bbd2] StatsBase v0.34.9
  [7200193e] Twiddle v1.1.2
  [ddb6d928] YAML v0.4.16
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_gbSBQk/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [ffbed154] DocStringExtensions v0.9.5
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [43287f4e] PtrArrays v1.3.0
  [a2af1166] SortingAlgorithms v1.2.2
  [860ef19b] StableRNGs v1.0.4
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.8.0
  [2913bbd2] StatsBase v0.34.9
  [69024149] StringEncodings v0.3.7
  [7200193e] Twiddle v1.1.2
  [ddb6d928] YAML v0.4.16
  [94ce4f54] Libiconv_jll v1.18.0+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
Test Summary: | Pass  Total   Time
Alphabet      |  413    413  12.9s
Test Summary: | Pass  Total  Time
BioSequences  |  226    226  9.4s
Test Summary: | Pass  Total   Time
LongSequences | 3822   3822  54.7s
Test Summary: | Pass  Total  Time
Translation   |  579    579  3.7s
Test Summary: | Pass  Total   Time
Counting      | 3723   3723  41.9s
Test Summary: | Pass  Total   Time
Search        |  280    280  21.7s
     Testing BioSequences tests passed 

Testing completed after 164.39s

PkgEval succeeded after 202.44s