Package evaluation to test PyCallJLD on Julia 1.14.0-DEV.1348 (2264f50275*) started at 2025-12-11T17:11:27.960 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.14` Set-up completed after 10.12s ################################################################################ # Installation # Installing PyCallJLD... Resolving package versions... Installed libaec_jll ──────────── v1.1.4+0 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed VersionParsing ──────── v1.3.0 Installed MPICH_jll ───────────── v4.3.2+0 Installed Compat ──────────────── v3.47.0 Installed DelimitedFiles ──────── v1.9.1 Installed MacroTools ──────────── v0.5.16 Installed Lz4_jll ─────────────── v1.10.1+0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed Statistics ──────────── v1.11.1 Installed Conda ───────────────── v1.10.3 Installed Blosc_jll ───────────── v1.21.7+0 Installed Blosc ───────────────── v0.7.3 Installed PrecompileTools ─────── v1.3.3 Installed StructUtils ─────────── v2.6.0 Installed Requires ────────────── v1.3.1 Installed PyCall ──────────────── v1.96.4 Installed Parsers ─────────────── v2.8.3 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed FileIO ──────────────── v1.17.1 Installed JSON ────────────────── v1.3.0 Installed HDF5_jll ────────────── v1.14.6+0 Installed JLD ─────────────────── v0.12.5 Installed Hwloc_jll ───────────── v2.12.2+0 Installed XML2_jll ────────────── v2.13.9+0 Installed MPIPreferences ──────── v0.1.11 Installed Libiconv_jll ────────── v1.18.0+0 Installed Preferences ─────────── v1.5.0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed JLLWrappers ─────────── v1.7.1 Installed HDF5 ────────────────── v0.14.1 Installed PyCallJLD ───────────── v0.2.1 Installing 9 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Blosc 44.2 KiB Installed artifact libaec 49.6 KiB Installed artifact Lz4 239.7 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Hwloc 3.5 MiB Installed artifact XML2 2.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [de320387] + PyCallJLD v0.2.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [a74b3585] + Blosc v0.7.3 ⌅ [34da2185] + Compat v3.47.0 [8f4d0f93] + Conda v1.10.3 [8bb1440f] + DelimitedFiles v1.9.1 [5789e2e9] + FileIO v1.17.1 ⌅ [f67ccb44] + HDF5 v0.14.1 ⌅ [4138dd39] + JLD v0.12.5 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [438e738f] + PyCall v1.96.4 [de320387] + PyCallJLD v0.2.1 [ae029012] + Requires v1.3.1 [10745b16] + Statistics v1.11.1 [ec057cc2] + StructUtils v2.6.0 [81def892] + VersionParsing v1.3.0 [0b7ba130] + Blosc_jll v1.21.7+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.13.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.14.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.12.2 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building HDF5 ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/96d77533eb46e208e801b939db8a27626c166565/build.log` Installation completed after 127.48s ################################################################################ # Precompilation # ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Nothing) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:10 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/precompile.jl:6 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{IO}, ::Base.DevNull) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] top-level scope @ /PkgEval.jl/scripts/precompile.jl:7 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [4] _start() @ Base ./client.jl:577 Precompilation failed after 13.23s ################################################################################ # Testing # Testing PyCallJLD Status `/tmp/jl_dU6XVV/Project.toml` ⌅ [4138dd39] JLD v0.12.5 [438e738f] PyCall v1.96.4 [de320387] PyCallJLD v0.2.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_dU6XVV/Manifest.toml` [a74b3585] Blosc v0.7.3 ⌅ [34da2185] Compat v3.47.0 [8f4d0f93] Conda v1.10.3 [8bb1440f] DelimitedFiles v1.9.1 [5789e2e9] FileIO v1.17.1 ⌅ [f67ccb44] HDF5 v0.14.1 ⌅ [4138dd39] JLD v0.12.5 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [438e738f] PyCall v1.96.4 [de320387] PyCallJLD v0.2.1 [ae029012] Requires v1.3.1 [10745b16] Statistics v1.11.1 [ec057cc2] StructUtils v2.6.0 [81def892] VersionParsing v1.3.0 [0b7ba130] Blosc_jll v1.21.7+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.13.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.14.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.12.2 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Constructor for type "Array" was extended in `HDF5` without explicit qualification or import.  NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Array end`.  Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. 1 dependency had output during precompilation: ┌ HDF5 │ WARNING: Constructor for type "Array" was extended in `HDF5` without explicit qualification or import. │ NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Array end`. │ Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. └ ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyCallJLD [de320387-30cd-5f83-91a8-a6e0ae8b8444] │ exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PyCall [438e738f-606a-5dbb-bf0a-cddfbfd45ab0] │ exception = Required dependency Base.PkgId(Base.UUID("81def892-9a0e-5fdd-b105-ffc91e053289"), "VersionParsing") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for Conda [8f4d0f93-b110-5947-807f-2305c1781a2d] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for JSON [682c06a0-de6a-54ab-a142-c8b1cf79cde6] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2891 ┌ Warning: The call to compilecache failed to create a usable precompiled cache file for PrecompileTools [aea7be01-6a6a-4083-8856-8a6e6704d82a] │ exception = Required dependency Base.PkgId(Base.UUID("21216c6a-2e73-6563-6e65-726566657250"), "Preferences") failed to load from a cache file. └ @ Base loading.jl:2891 ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("aea7be01-6a6a-4083-8856-8a6e6704d82a"), "PrecompileTools") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=0, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2813  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [4] macro expansion  @ ./loading.jl:2593 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2557  [7] require  @ ./loading.jl:2533 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/Parsers/6Nt9C/src/precompile.jl:1  [13] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [14] top-level scope  @ ~/.julia/packages/Parsers/6Nt9C/src/Parsers.jl:536  [15] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [16] include_package_for_output(pkg::Base.PkgId, input::String, syntax_version::VersionNumber, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3250  [17] top-level scope  @ stdin:5  [18] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [19] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3092  [20] include_string  @ ./loading.jl:3102 [inlined]  [21] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [22] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Parsers/6Nt9C/src/precompile.jl:1 in expression starting at /home/pkgeval/.julia/packages/Parsers/6Nt9C/src/Parsers.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Parsers │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Parsers Failed to precompile Parsers [69de0a69-1ddd-5017-9359-2bf0b02dc9f0] to "/home/pkgeval/.julia/compiled/v1.14/Parsers/jl_ag2Lmq" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/JSON/0oqO1/src/JSON.jl:1 in expression starting at /home/pkgeval/.julia/packages/Conda/05AVg/src/Conda.jl:1 in expression starting at /home/pkgeval/.julia/packages/PyCall/1gn3u/src/PyCall.jl:1 in expression starting at /home/pkgeval/.julia/packages/PyCallJLD/ZrHbU/src/PyCallJLD.jl:3 in expression starting at /home/pkgeval/.julia/packages/PyCallJLD/ZrHbU/test/runtests.jl:1 Testing failed after 246.81s ERROR: LoadError: Package PyCallJLD errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:3053 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2902 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:237 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:228 PkgEval failed after 449.16s: package fails to precompile