Package evaluation to test Tardigrade on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T18:30:19.251 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.39s ################################################################################ # Installation # Installing Tardigrade... Resolving package versions... Installed Bzip2_jll ───────────── v1.0.9+0 Installed NetCDF_jll ──────────── v401.900.300+0 Installed Lz4_jll ─────────────── v1.10.1+0 Installed libaec_jll ──────────── v1.1.4+0 Installed MPICH_jll ───────────── v4.3.2+0 Installed OrderedCollections ──── v1.8.1 Installed DelimitedFiles ──────── v1.9.1 Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed Compat ──────────────── v3.47.0 Installed Suppressor ──────────── v0.2.8 Installed Statistics ──────────── v1.11.1 Installed PrecompileTools ─────── v1.3.3 Installed StringEncodings ─────── v0.3.7 Installed Blosc_jll ───────────── v1.21.7+0 Installed Exodus_jll ──────────── v9.4.0+0 Installed StaticArraysCore ────── v1.4.4 Installed StaticArrays ────────── v1.9.15 Installed Exodus ──────────────── v0.1.9 Installed Documenter ──────────── v0.27.25 Installed Fmt_jll ─────────────── v11.1.1+0 Installed libzip_jll ──────────── v1.11.3+0 Installed YAML ────────────────── v0.4.16 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed HDF5_jll ────────────── v1.14.6+0 Installed Hwloc_jll ───────────── v2.12.2+0 Installed Parsers ─────────────── v2.8.3 Installed JSON ────────────────── v0.21.4 Installed IOCapture ───────────── v0.2.5 Installed Parameters ──────────── v0.12.3 Installed XML2_jll ────────────── v2.13.9+0 Installed MPIPreferences ──────── v0.1.11 Installed Libiconv_jll ────────── v1.18.0+0 Installed XZ_jll ──────────────── v5.8.1+0 Installed JLLWrappers ─────────── v1.7.1 Installed Preferences ─────────── v1.5.0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed UnPack ──────────────── v1.0.2 Installed ANSIColoredPrinters ─── v0.0.1 Installed DocStringExtensions ─── v0.9.5 Installed Tardigrade ──────────── v0.1.0 Installing 15 artifacts Installed artifact Fmt 208.4 KiB Installed artifact libzip 177.6 KiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libaec 49.6 KiB Installed artifact NetCDF 936.0 KiB Installed artifact Blosc 44.2 KiB Installed artifact XML2 2.5 MiB Installed artifact Hwloc 3.5 MiB Installed artifact XZ 1.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Lz4 239.7 KiB Installed artifact Exodus 4.7 MiB Installed artifact Bzip2 503.5 KiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [272ec1bc] + Tardigrade v0.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 ⌅ [34da2185] + Compat v3.47.0 [8bb1440f] + DelimitedFiles v1.9.1 [ffbed154] + DocStringExtensions v0.9.5 ⌅ [e30172f5] + Documenter v0.27.25 ⌅ [f57ae99e] + Exodus v0.1.9 ⌅ [b5f81e59] + IOCapture v0.2.5 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [3da0fdf6] + MPIPreferences v0.1.11 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [69024149] + StringEncodings v0.3.7 [fd094767] + Suppressor v0.2.8 [272ec1bc] + Tardigrade v0.1.0 [3a884ed6] + UnPack v1.0.2 [ddb6d928] + YAML v0.4.16 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [fc7263ad] + Exodus_jll v9.4.0+0 [5dc1e892] + Fmt_jll v11.1.1+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.1+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 14.58s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4256.2 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1058.9 ms ✓ ANSIColoredPrinters 1056.7 ms ✓ Statistics 759.8 ms ✓ UnPack 941.2 ms ✓ StaticArraysCore 1258.1 ms ✓ OrderedCollections 1094.6 ms ✓ DocStringExtensions 773.0 ms ✓ Suppressor 812.5 ms ✓ IOCapture 952.6 ms ✓ DelimitedFiles 1102.3 ms ✓ Preferences 1286.3 ms ✓ Statistics → SparseArraysExt 915.2 ms ✓ Parameters 1161.8 ms ✓ JLLWrappers 1419.4 ms ✓ MPIPreferences 926.3 ms ✓ PrecompileTools 8299.2 ms ✓ Compat 1377.7 ms ✓ libaec_jll 1207.4 ms ✓ Xorg_libpciaccess_jll 1158.1 ms ✓ Bzip2_jll 1085.3 ms ✓ Fmt_jll 1196.8 ms ✓ Libiconv_jll 1174.0 ms ✓ Lz4_jll 1135.6 ms ✓ XZ_jll 874.4 ms ✓ MicrosoftMPI_jll 4367.3 ms ✓ MPItrampoline_jll 12870.4 ms ✓ StaticArrays 16055.0 ms ✓ Parsers 1035.3 ms ✓ StringEncodings 1342.3 ms ✓ XML2_jll 1375.9 ms ✓ Blosc_jll 1474.6 ms ✓ libzip_jll 1559.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 3704.2 ms ✓ JSON 2632.4 ms ✓ YAML 1440.5 ms ✓ Hwloc_jll 9076.0 ms ✓ Documenter 4913.1 ms ✓ MPICH_jll 4731.1 ms ✓ OpenMPI_jll 5273.3 ms ✓ HDF5_jll 5103.4 ms ✓ NetCDF_jll 5284.7 ms ✓ Exodus_jll 5614.4 ms ✓ Exodus 5723.7 ms ✓ Tardigrade 43 dependencies successfully precompiled in 127 seconds. 38 already precompiled. Precompilation completed after 145.87s ################################################################################ # Testing # Testing Tardigrade Status `/tmp/jl_PWRLQP/Project.toml` ⌅ [34da2185] Compat v3.47.0 ⌅ [e30172f5] Documenter v0.27.25 ⌅ [f57ae99e] Exodus v0.1.9 [d96e819e] Parameters v0.12.3 [90137ffa] StaticArrays v1.9.15 [fd094767] Suppressor v0.2.8 [272ec1bc] Tardigrade v0.1.0 [ddb6d928] YAML v0.4.16 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_PWRLQP/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 ⌅ [34da2185] Compat v3.47.0 [8bb1440f] DelimitedFiles v1.9.1 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 ⌅ [f57ae99e] Exodus v0.1.9 ⌅ [b5f81e59] IOCapture v0.2.5 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [69024149] StringEncodings v0.3.7 [fd094767] Suppressor v0.2.8 [272ec1bc] Tardigrade v0.1.0 [3a884ed6] UnPack v1.0.2 [ddb6d928] YAML v0.4.16 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [fc7263ad] Exodus_jll v9.4.0+0 [5dc1e892] Fmt_jll v11.1.1+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [fe0851c0] OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.1+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Assembly.jl - DenseStaticAssembly : Error During Test at /home/pkgeval/.julia/packages/Tardigrade/6zR1q/test/Assembly.jl:2 Got exception outside of a @test UndefVarError: `open_exodus_database` not defined in `Exodus` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] getproperty @ ./Base_compiler.jl:50 [inlined] [2] read_exodus_mesh(mesh_settings::Dict{Any, Any}) @ Tardigrade.Meshes ~/.julia/packages/Tardigrade/6zR1q/src/Meshes.jl:226 [3] Mesh(mesh_settings::Dict{Any, Any}) @ Tardigrade.Meshes ~/.julia/packages/Tardigrade/6zR1q/src/Meshes.jl:188 [4] top-level scope @ ~/.julia/packages/Tardigrade/6zR1q/test/Assembly.jl:3 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [6] macro expansion @ ~/.julia/packages/Tardigrade/6zR1q/test/Assembly.jl:4 [inlined] [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ ~/.julia/packages/Tardigrade/6zR1q/test/runtests.jl:15 [9] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [10] top-level scope @ none:6 [11] eval(m::Module, e::Any) @ Core ./boot.jl:489 [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [13] _start() @ Base ./client.jl:577 Test Summary: | Error Total Time Assembly.jl - DenseStaticAssembly | 1 1 16.4s RNG of the outermost testset: Random.Xoshiro(0xdd44166b8ef56183, 0xcd274516c66148c4, 0x78aec09a19a94aab, 0x71499feac699f389, 0xb927081dd09d59e5) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Tardigrade/6zR1q/test/Assembly.jl:2 in expression starting at /home/pkgeval/.julia/packages/Tardigrade/6zR1q/test/runtests.jl:15 Testing failed after 41.2s ERROR: LoadError: Package Tardigrade errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 231.22s: package tests unexpectedly errored