Package evaluation to test Surrogates on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T18:22:46.305 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.23s ################################################################################ # Installation # Installing Surrogates... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed CompositionsBase ──────────── v0.1.2 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed GLM ───────────────────────── v1.9.0 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.0 Installed Adapt ─────────────────────── v4.4.0 Installed DelimitedFiles ────────────── v1.9.1 Installed StatsModels ───────────────── v0.7.7 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed ConstructionBase ──────────── v1.6.0 Installed StatsBase ─────────────────── v0.34.8 Installed SurrogatesBase ────────────── v1.1.0 Installed SparseInverseSubset ───────── v0.1.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed Zygote ────────────────────── v0.7.10 Installed LatticeRules ──────────────── v0.0.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed Sparspak ──────────────────── v0.3.14 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed DataValueInterfaces ───────── v1.0.0 Installed CommonSubexpressions ──────── v0.3.1 Installed StructArrays ──────────────── v0.7.2 Installed OffsetArrays ──────────────── v1.17.0 Installed PrecompileTools ───────────── v1.3.3 Installed ChainRules ────────────────── v1.72.6 Installed ConcreteStructs ───────────── v0.2.3 Installed StaticArraysCore ──────────── v1.4.4 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArrays ──────────────── v1.9.15 Installed ChainRulesCore ────────────── v1.26.0 Installed ExtendableSparse ──────────── v1.7.1 Installed GPUArraysCore ─────────────── v0.2.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed Requires ──────────────────── v1.3.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed Tables ────────────────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.2 Installed Sobol ─────────────────────── v1.5.0 Installed Surrogates ────────────────── v7.1.0 Installed PtrArrays ─────────────────── v1.3.0 Installed Distributions ─────────────── v0.25.122 Installed IRTools ───────────────────── v0.4.15 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed SpecialFunctions ──────────── v2.6.1 Installed Preferences ───────────────── v1.5.0 Installed IterativeSolvers ──────────── v0.9.4 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed ZygoteRules ───────────────── v0.2.7 Installed TableTraits ───────────────── v1.0.1 Installed Primes ────────────────────── v0.5.7 Installed PDMats ────────────────────── v0.11.36 Installed SortingAlgorithms ─────────── v1.2.2 Installed Accessors ─────────────────── v0.1.42 Installed ILUZero ───────────────────── v0.2.0 Installed DocStringExtensions ───────── v0.9.5 Installed QuasiMonteCarlo ───────────── v0.3.3 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [6fc51010] + Surrogates v7.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [95c220a8] + ExtendableSparse v1.7.1 [1a297f60] + FillArrays v1.15.0 [f6369f11] + ForwardDiff v1.3.0 [38e38edf] + GLM v1.9.0 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [88f59080] + ILUZero v0.2.0 [7869d1d1] + IRTools v0.4.15 [18e54dd8] + IntegerMathUtils v0.1.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [73f95e8e] + LatticeRules v0.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.3 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [1277b4bf] + ShiftedArrays v2.0.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [e56a9233] + Sparspak v0.3.14 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [09ab397b] + StructArrays v0.7.2 [6fc51010] + Surrogates v7.1.0 [89f642e6] + SurrogatesBase v1.1.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 9.83s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 5790.3 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4712.2 ms ✓ MacroTools 965.2 ms ✓ Reexport 1231.4 ms ✓ Statistics 889.1 ms ✓ DataAPI 1144.9 ms ✓ ConstructionBase 2088.5 ms ✓ IrrationalConstants 830.4 ms ✓ RealDot 1060.3 ms ✓ DataValueInterfaces 1336.8 ms ✓ StaticArraysCore 1004.6 ms ✓ StatsAPI 1075.6 ms ✓ ConcreteStructs 1260.7 ms ✓ Requires 1443.8 ms ✓ OrderedCollections 914.6 ms ✓ InverseFunctions 1004.0 ms ✓ LatticeRules 808.6 ms ✓ CompositionsBase 1242.8 ms ✓ DocStringExtensions 947.7 ms ✓ ShiftedArrays 1167.7 ms ✓ AbstractFFTs 1733.5 ms ✓ OffsetArrays 2487.9 ms ✓ FillArrays 754.7 ms ✓ SurrogatesBase 875.2 ms ✓ IntegerMathUtils 1383.9 ms ✓ PtrArrays 1113.5 ms ✓ IteratorInterfaceExtensions 1592.1 ms ✓ SuiteSparse 1344.0 ms ✓ ILUZero 1014.5 ms ✓ NaNMath 938.6 ms ✓ DelimitedFiles 1134.1 ms ✓ Compat 1128.9 ms ✓ Preferences 1721.3 ms ✓ CommonSubexpressions 4260.1 ms ✓ IRTools 1320.5 ms ✓ Statistics → SparseArraysExt 944.2 ms ✓ Missings 786.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 845.6 ms ✓ DiffResults 920.2 ms ✓ Adapt 3531.5 ms ✓ DataStructures 1605.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 932.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 966.4 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1517.7 ms ✓ LogExpFunctions 4092.8 ms ✓ AbstractFFTs → AbstractFFTsTestExt 2689.5 ms ✓ Sparspak 1682.5 ms ✓ FillArrays → FillArraysSparseArraysExt 1088.2 ms ✓ FillArrays → FillArraysStatisticsExt 1105.4 ms ✓ Primes 942.8 ms ✓ AliasTables 743.0 ms ✓ TableTraits 1282.0 ms ✓ SparseInverseSubset 1832.7 ms ✓ PDMats 2326.6 ms ✓ Sobol 886.1 ms ✓ Compat → CompatLinearAlgebraExt 1137.7 ms ✓ JLLWrappers 889.5 ms ✓ PrecompileTools 1164.1 ms ✓ GPUArraysCore 1268.4 ms ✓ Adapt → AdaptSparseArraysExt 799.0 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1059.2 ms ✓ SortingAlgorithms 2257.0 ms ✓ QuadGK 5008.7 ms ✓ Accessors 813.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1895.3 ms ✓ Tables 1405.9 ms ✓ FillArrays → FillArraysPDMatsExt 2635.8 ms ✓ ChainRulesCore 1402.2 ms ✓ Rmath_jll 1519.7 ms ✓ OpenSpecFun_jll 2892.7 ms ✓ RecipesBase 13000.4 ms ✓ StaticArrays 4443.4 ms ✓ StatsBase 2460.5 ms ✓ Accessors → LinearAlgebraExt 1666.5 ms ✓ Accessors → TestExt 1524.1 ms ✓ StructArrays 1296.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2353.8 ms ✓ ZygoteRules 885.9 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 3080.3 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1459.1 ms ✓ Rmath 5072.9 ms ✓ SpecialFunctions 3870.9 ms ✓ IterativeSolvers 1625.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1385.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1366.8 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1391.9 ms ✓ Adapt → AdaptStaticArraysExt 4275.7 ms ✓ ExtendableSparse 1552.2 ms ✓ Accessors → StaticArraysExt 1806.0 ms ✓ PDMats → StatsBaseExt 6389.6 ms ✓ QuasiMonteCarlo 1369.4 ms ✓ StructArrays → StructArraysSparseArraysExt 856.0 ms ✓ StructArrays → StructArraysLinearAlgebraExt 953.3 ms ✓ StructArrays → StructArraysAdaptExt 1595.6 ms ✓ StructArrays → StructArraysStaticArraysExt 981.4 ms ✓ Accessors → StructArraysExt 3828.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2392.6 ms ✓ HypergeometricFunctions 1279.0 ms ✓ DiffRules 12052.1 ms ✓ ChainRules 2795.3 ms ✓ StatsFuns 6234.4 ms ✓ ForwardDiff 945.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3401.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 4921.7 ms ✓ StatsModels 10456.7 ms ✓ Distributions 1993.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [9] include_string  @ ./loading.jl:3013 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 Precompilation completed after 257.79s ################################################################################ # Testing # Testing Surrogates Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed MKL_jll ─────────────────── v2025.2.0+0 Installed DefineSingletons ────────── v0.1.2 Installed EnzymeCore ──────────────── v0.8.17 Installed ContextVariablesX ───────── v0.1.3 Installed InitialValues ───────────── v0.3.1 Installed Functors ────────────────── v0.5.2 Installed FLoops ──────────────────── v0.2.2 Installed NearestNeighbors ────────── v0.4.24 Installed FLoopsBase ──────────────── v0.1.1 Installed GaussQuadrature ─────────── v0.5.8 Installed LIBLINEAR ───────────────── v0.7.1 Installed ArgCheck ────────────────── v2.5.0 Installed LIBSVM ──────────────────── v0.8.1 Installed Distances ───────────────── v0.10.12 Installed libsvm_jll ──────────────── v3.25.0+0 Installed ScopedValues ────────────── v1.5.0 Installed Arpack ──────────────────── v0.5.4 Installed LLVMOpenMP_jll ──────────── v18.1.8+0 Installed FileIO ──────────────────── v1.17.1 Installed MLStyle ─────────────────── v0.4.17 Installed Aqua ────────────────────── v0.8.14 Installed oneTBB_jll ──────────────── v2022.0.0+1 Installed AbstractTrees ───────────── v0.4.5 Installed IntelOpenMP_jll ─────────── v2025.2.0+0 Installed CEnum ───────────────────── v0.5.0 Installed Optimisers ──────────────── v0.4.6 Installed PrettyPrint ─────────────── v0.2.0 Installed CUDA_Runtime_jll ────────── v0.19.2+0 Installed SparseMatricesCSR ───────── v0.6.9 Installed SimpleTraits ────────────── v0.9.5 Installed StableRNGs ──────────────── v1.0.4 Installed PolyChaos ───────────────── v0.2.11 Installed Clustering ──────────────── v0.15.8 Installed AbstractGPs ─────────────── v0.5.24 Installed Flux ────────────────────── v0.16.5 Installed Transducers ─────────────── v0.4.85 Installed SplittablesBase ─────────── v0.1.15 Installed Baselet ─────────────────── v0.1.1 Installed Setfield ────────────────── v1.1.2 Installed liblinear_jll ───────────── v2.47.0+0 Installed AdaptiveRejectionSampling ─ v0.1.2 Installed OneHotArrays ────────────── v0.2.10 Installed HashArrayMappedTries ────── v0.2.0 Installed NameResolution ──────────── v0.1.5 Installed MLDataDevices ───────────── v1.15.1 Installed ForwardDiff ─────────────── v0.10.39 Installed Cubature ────────────────── v1.5.1 Installed Combinatorics ───────────── v1.0.3 Installed NNlib ───────────────────── v0.9.31 Installed GaussianMixtures ────────── v0.3.13 Installed SciMLPublic ─────────────── v1.0.0 Installed Parsers ─────────────────── v2.8.3 Installed Arpack_jll ──────────────── v3.5.1+1 Installed BangBang ────────────────── v0.4.6 Installed MLCore ──────────────────── v1.0.0 Installed UnsafeAtomics ───────────── v0.3.0 Installed MLUtils ─────────────────── v0.4.8 Installed XGBoost ─────────────────── v2.5.2 Installed SafeTestsets ────────────── v0.1.0 Installed MicroCollections ────────── v0.2.0 Installed StructTypes ─────────────── v1.11.0 Installed XGBoost_GPU_jll ─────────── v2.1.5+0 Installed JuliaVariables ──────────── v0.2.4 Installed JLD2 ────────────────────── v0.5.15 Installed ProgressLogging ─────────── v0.1.6 Installed TranscodingStreams ──────── v0.11.3 Installed XGBoost_jll ─────────────── v2.1.5+0 Installed Atomix ──────────────────── v1.1.2 Installed TensorCore ──────────────── v0.1.1 Installed JSON3 ───────────────────── v1.14.3 Installed ScikitLearnBase ─────────── v0.5.0 Installed CUDA_Driver_jll ─────────── v13.0.2+0 Installed Cubature_jll ────────────── v1.0.5+0 Installed KernelAbstractions ──────── v0.9.39 Installed FFTW ────────────────────── v1.10.0 Installed KernelFunctions ─────────── v0.10.66 Installed FFTW_jll ────────────────── v3.3.11+0 Installed ShowCases ───────────────── v0.1.0 Installing 8 artifacts Installed artifact Arpack 147.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact liblinear 125.3 KiB Installed artifact libsvm 124.2 KiB Installed artifact FFTW 2.2 MiB Installed artifact XGBoost 3.8 MiB Installed artifact Cubature 9.9 MiB Installed artifact CUDA_Driver 96.1 MiB Updating `/tmp/jl_b3JwND/Project.toml` [99985d1d] + AbstractGPs v0.5.24 [4c88cf16] + Aqua v0.8.14 [667455a9] + Cubature v1.5.1 [587475ba] + Flux v0.16.5 ⌅ [f6369f11] ↓ ForwardDiff v1.3.0 ⇒ v0.10.39 [cc18c42c] + GaussianMixtures v0.3.13 [b1bec4e5] + LIBSVM v0.8.1 [3bd65402] + Optimisers v0.4.6 [8d666b04] + PolyChaos v0.2.11 [1bc83da4] + SafeTestsets v0.1.0 [860ef19b] + StableRNGs v1.0.4 [6fc51010] + Surrogates v7.1.0 [009559a3] + XGBoost v2.5.2 [44cfe95a] ~ Pkg ⇒ v1.13.0 Updating `/tmp/jl_b3JwND/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [1520ce14] + AbstractTrees v0.4.5 ⌅ [c75e803d] + AdaptiveRejectionSampling v0.1.2 [4c88cf16] + Aqua v0.8.14 [dce04be8] + ArgCheck v2.5.0 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [fa961155] + CEnum v0.5.0 [aaaa29a8] + Clustering v0.15.8 [861a8166] + Combinatorics v1.0.3 [6add18c4] + ContextVariablesX v0.1.3 [667455a9] + Cubature v1.5.1 [244e2a9f] + DefineSingletons v0.1.2 [b4f34e82] + Distances v0.10.12 [f151be2c] + EnzymeCore v0.8.17 [7a1cc6ca] + FFTW v1.10.0 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [587475ba] + Flux v0.16.5 ⌅ [f6369f11] ↓ ForwardDiff v1.3.0 ⇒ v0.10.39 [d9f16b24] + Functors v0.5.2 [d54b0c1a] + GaussQuadrature v0.5.8 [cc18c42c] + GaussianMixtures v0.3.13 [076d061b] + HashArrayMappedTries v0.2.0 [22cec73e] + InitialValues v0.3.1 ⌅ [033835bb] + JLD2 v0.5.15 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [ec8451be] + KernelFunctions v0.10.66 [2d691ee1] + LIBLINEAR v0.7.1 [b1bec4e5] + LIBSVM v0.8.1 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.15.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [128add7d] + MicroCollections v0.2.0 [872c559c] + NNlib v0.9.31 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.24 [0b1bfda6] + OneHotArrays v0.2.10 [3bd65402] + Optimisers v0.4.6 [69de0a69] + Parsers v2.8.3 [8d666b04] + PolyChaos v0.2.11 [8162dcfd] + PrettyPrint v0.2.0 [33c8b6b6] + ProgressLogging v0.1.6 [1bc83da4] + SafeTestsets v0.1.0 [431bcebd] + SciMLPublic v1.0.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a0a7dd2c] + SparseMatricesCSR v0.6.9 [171d559e] + SplittablesBase v0.1.15 [860ef19b] + StableRNGs v1.0.4 [856f2bd8] + StructTypes v1.11.0 [6fc51010] + Surrogates v7.1.0 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [013be700] + UnsafeAtomics v0.3.0 [009559a3] + XGBoost v2.5.2 ⌅ [68821587] + Arpack_jll v3.5.1+1 [4ee394cb] + CUDA_Driver_jll v13.0.2+0 [76a88914] + CUDA_Runtime_jll v0.19.2+0 [7bc98958] + Cubature_jll v1.0.5+0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [856f044c] + MKL_jll v2025.2.0+0 [bf13095a] + XGBoost_GPU_jll v2.1.5+0 [a5c6f535] + XGBoost_jll v2.1.5+0 [275f1f90] + liblinear_jll v2.47.0+0 [08558c22] + libsvm_jll v3.25.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_b3JwND/Project.toml` [99985d1d] AbstractGPs v0.5.24 [4c88cf16] Aqua v0.8.14 [d360d2e6] ChainRulesCore v1.26.0 [667455a9] Cubature v1.5.1 [31c24e10] Distributions v0.25.122 [95c220a8] ExtendableSparse v1.7.1 [587475ba] Flux v0.16.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [38e38edf] GLM v1.9.0 [cc18c42c] GaussianMixtures v0.3.13 [42fd0dbc] IterativeSolvers v0.9.4 [b1bec4e5] LIBSVM v0.8.1 [3bd65402] Optimisers v0.4.6 [8d666b04] PolyChaos v0.2.11 [1fd47b50] QuadGK v2.11.2 [8a4e6c94] QuasiMonteCarlo v0.3.3 [1bc83da4] SafeTestsets v0.1.0 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [6fc51010] Surrogates v7.1.0 [89f642e6] SurrogatesBase v1.1.0 [009559a3] XGBoost v2.5.2 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_b3JwND/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 ⌅ [c75e803d] AdaptiveRejectionSampling v0.1.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [667455a9] Cubature v1.5.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.17 [95c220a8] ExtendableSparse v1.7.1 [7a1cc6ca] FFTW v1.10.0 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.15.0 [587475ba] Flux v0.16.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [d9f16b24] Functors v0.5.2 [38e38edf] GLM v1.9.0 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [cc18c42c] GaussianMixtures v0.3.13 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [88f59080] ILUZero v0.2.0 [7869d1d1] IRTools v0.4.15 [22cec73e] InitialValues v0.3.1 [18e54dd8] IntegerMathUtils v0.1.3 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [2d691ee1] LIBLINEAR v0.7.1 [b1bec4e5] LIBSVM v0.8.1 [73f95e8e] LatticeRules v0.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.15.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.31 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.24 [6fe1bfb0] OffsetArrays v1.17.0 [0b1bfda6] OneHotArrays v0.2.10 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [8d666b04] PolyChaos v0.2.11 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.6 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [8a4e6c94] QuasiMonteCarlo v0.3.3 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [1bc83da4] SafeTestsets v0.1.0 [431bcebd] SciMLPublic v1.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [7e506255] ScopedValues v1.5.0 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [a0a7dd2c] SparseMatricesCSR v0.6.9 [e56a9233] Sparspak v0.3.14 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [6fc51010] Surrogates v7.1.0 [89f642e6] SurrogatesBase v1.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [013be700] UnsafeAtomics v0.3.0 [009559a3] XGBoost v2.5.2 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 ⌅ [68821587] Arpack_jll v3.5.1+1 [4ee394cb] CUDA_Driver_jll v13.0.2+0 [76a88914] CUDA_Runtime_jll v0.19.2+0 [7bc98958] Cubature_jll v1.0.5+0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [bf13095a] XGBoost_GPU_jll v2.1.5+0 [a5c6f535] XGBoost_jll v2.1.5+0 [275f1f90] liblinear_jll v2.47.0+0 [08558c22] libsvm_jll v3.25.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [9] include_string  @ ./loading.jl:3013 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [9] include_string  @ ./loading.jl:3013 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Zygote │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.14/Zygote/jl_iVyamT" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Surrogates/CkrfN/src/Radials.jl:111 in expression starting at /home/pkgeval/.julia/packages/Surrogates/CkrfN/src/Surrogates.jl:1 in expression starting at /home/pkgeval/.julia/packages/Surrogates/CkrfN/test/runtests.jl:1 Testing failed after 121.83s ERROR: LoadError: Package Surrogates errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 438.05s: package fails to precompile