Package evaluation to test StochasticGene on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-28T00:00:00.383 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.7s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed FastPower ─────────────────────────── v1.2.0 Installed InlineStrings ─────────────────────── v1.4.5 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed OrderedCollections ────────────────── v1.8.1 Installed MultivariateStats ─────────────────── v0.10.3 Installed Optim ─────────────────────────────── v1.13.3 Installed OrdinaryDiffEqRosenbrock ──────────── v1.18.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed EnzymeCore ────────────────────────── v0.8.17 Installed CpuId ─────────────────────────────── v0.3.1 Installed PreallocationTools ────────────────── v0.4.34 Installed SentinelArrays ────────────────────── v1.4.8 Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0 Installed Compiler ──────────────────────────── v0.1.1 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed NaNMath ───────────────────────────── v1.1.3 Installed StaticArrayInterface ──────────────── v1.8.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed LoweredCodeUtils ──────────────────── v3.5.0 Installed Revise ────────────────────────────── v3.12.3 Installed OrdinaryDiffEqQPRK ────────────────── v1.4.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed NonlinearSolveBase ────────────────── v2.4.0 Installed EnumX ─────────────────────────────── v1.0.5 Installed Tables ────────────────────────────── v1.12.1 Installed Arpack ────────────────────────────── v0.5.4 Installed NLSolversBase ─────────────────────── v7.10.0 Installed LinearSolve ───────────────────────── v3.48.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.6.0 Installed BracketingNonlinearSolve ──────────── v1.6.0 Installed Reexport ──────────────────────────── v1.2.2 Installed Jieko ─────────────────────────────── v0.2.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed DiffEqBase ────────────────────────── v6.192.0 Installed Preferences ───────────────────────── v1.5.0 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.3.1 Installed RegistryInstances ─────────────────── v0.1.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed TableTraits ───────────────────────── v1.0.1 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.4.0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.5.0 Installed Crayons ───────────────────────────── v4.1.1 Installed OrdinaryDiffEqLinear ──────────────── v1.6.0 Installed NonlinearSolve ────────────────────── v4.12.0 Installed RecursiveArrayTools ───────────────── v3.39.0 Installed UnPack ────────────────────────────── v1.0.2 Installed ADTypes ───────────────────────────── v1.19.0 Installed MacroTools ────────────────────────── v0.5.16 Installed DataStructures ────────────────────── v0.19.3 Installed DiffResults ───────────────────────── v1.1.0 Installed ManualMemory ──────────────────────── v0.1.8 Installed GenericSchur ──────────────────────── v0.5.6 Installed AbstractTrees ─────────────────────── v0.4.5 Installed OpenSSH_jll ───────────────────────── v10.2.1+0 Installed FillArrays ────────────────────────── v1.15.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed SciMLJacobianOperators ────────────── v0.1.11 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed DelimitedFiles ────────────────────── v1.9.1 Installed ArrayInterface ────────────────────── v7.22.0 Installed StatsBase ─────────────────────────── v0.34.8 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed DataValueInterfaces ───────────────── v1.0.0 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed IrrationalConstants ───────────────── v0.2.6 Installed ConcreteStructs ───────────────────── v0.2.3 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.6.0 Installed OrdinaryDiffEqExtrapolation ───────── v1.9.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.5.0 Installed IOCapture ─────────────────────────── v1.0.0 Installed ArrayLayouts ──────────────────────── v1.12.2 Installed Setfield ──────────────────────────── v1.1.2 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed OrdinaryDiffEqPRK ─────────────────── v1.4.0 Installed PooledArrays ──────────────────────── v1.4.3 Installed WorkerUtilities ───────────────────── v1.6.1 Installed PDMats ────────────────────────────── v0.11.36 Installed Moshi ─────────────────────────────── v0.3.7 Installed NonlinearSolveQuasiNewton ─────────── v1.11.0 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.5.0 Installed DocStringExtensions ───────────────── v0.9.5 Installed CompositionsBase ──────────────────── v0.1.2 Installed CommonSolve ───────────────────────── v0.2.4 Installed ForwardDiff ───────────────────────── v1.3.0 Installed DifferentiationInterface ──────────── v0.7.12 Installed ZMQ ───────────────────────────────── v1.5.1 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed VersionParsing ────────────────────── v1.3.0 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed OrdinaryDiffEqStabilizedRK ────────── v1.4.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed AliasTables ───────────────────────── v1.1.3 Installed LineSearch ────────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed OrdinaryDiffEq ────────────────────── v6.103.0 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed Git_LFS_jll ───────────────────────── v3.7.0+0 Installed OrdinaryDiffEqBDF ─────────────────── v1.10.1 Installed SciMLOperators ────────────────────── v1.13.0 Installed OrdinaryDiffEqSymplecticRK ────────── v1.7.0 Installed Conda ─────────────────────────────── v1.10.3 Installed SciMLStructures ───────────────────── v1.7.0 Installed StaticArrays ──────────────────────── v1.9.15 Installed Krylov ────────────────────────────── v0.10.3 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed OrdinaryDiffEqLowStorageRK ────────── v1.7.0 Installed CodeTracking ──────────────────────── v3.0.0 Installed LSODA ─────────────────────────────── v0.7.5 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed SciMLPublic ───────────────────────── v1.0.0 Installed StringManipulation ────────────────── v0.4.2 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqDifferentiation ─────── v1.16.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.15.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.15.1 Installed CSV ───────────────────────────────── v0.10.15 Installed JuliaInterpreter ──────────────────── v0.10.8 Installed PrettyTables ──────────────────────── v3.1.2 Installed OrdinaryDiffEqCore ────────────────── v1.36.0 Installed Distributions ─────────────────────── v0.25.122 Installed Git_jll ───────────────────────────── v2.51.3+0 Installed SciMLBase ─────────────────────────── v2.127.0 Installed JSON ──────────────────────────────── v0.21.4 Installed Parsers ───────────────────────────── v2.8.3 Installed NonlinearSolveFirstOrder ──────────── v1.10.0 Installed Documenter ────────────────────────── v1.16.1 Installed Rmath ─────────────────────────────── v0.9.0 Installed Arpack_jll ────────────────────────── v3.5.1+1 Installed OrdinaryDiffEqExplicitRK ──────────── v1.4.0 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed FastClosures ──────────────────────── v0.3.2 Installed StatsFuns ─────────────────────────── v1.5.2 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed FiniteDiff ────────────────────────── v2.29.0 Installed Polyester ─────────────────────────── v0.7.18 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.7.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.4.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed OrdinaryDiffEqSSPRK ───────────────── v1.7.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.6.0 Installed IJulia ────────────────────────────── v1.33.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.7.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed DataFrames ────────────────────────── v1.8.1 Installed Accessors ─────────────────────────── v0.1.42 Installed OrdinaryDiffEqDefault ─────────────── v1.8.0 Installed OrdinaryDiffEqVerner ──────────────── v1.6.0 Installed Adapt ─────────────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed ConstructionBase ──────────────────── v1.6.0 Installed FilePathsBase ─────────────────────── v0.9.24 Installed ExponentialUtilities ──────────────── v1.28.0 Installed StrideArraysCore ──────────────────── v0.5.8 Installed HypergeometricFunctions ───────────── v0.3.28 Installed PositiveFactorizations ────────────── v0.2.4 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed Compat ────────────────────────────── v4.18.1 Installed TranscodingStreams ────────────────── v0.11.3 Installed Statistics ────────────────────────── v1.11.1 Installed StatsAPI ──────────────────────────── v1.7.1 Installed LazyArrays ────────────────────────── v2.9.3 Installed TimerOutputs ──────────────────────── v0.5.29 Installed MarkdownAST ───────────────────────── v0.1.2 Installed ExproniconLite ────────────────────── v0.10.14 Installed PrecompileTools ───────────────────── v1.3.3 Installed ChainRulesCore ────────────────────── v1.26.0 Installed IfElse ────────────────────────────── v0.1.1 Installed CPUSummary ────────────────────────── v0.2.7 Installed Parameters ────────────────────────── v0.12.3 Installed PtrArrays ─────────────────────────── v1.3.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed SciMLLogging ──────────────────────── v1.5.0 Installed LazilyInitializedFields ───────────── v1.3.0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed SimpleNonlinearSolve ──────────────── v2.9.0 Installed FFTW ──────────────────────────────── v1.10.0 Installed SpecialFunctions ──────────────────── v2.6.1 Installed Git ───────────────────────────────── v1.5.0 Installed LineSearches ──────────────────────── v7.5.1 Installed OrdinaryDiffEqFunctionMap ─────────── v1.5.0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.5.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installed StochasticGene ────────────────────── v1.5.10 Installing 12 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact ZeroMQ 316.1 KiB Installed artifact Expat 283.3 KiB Installed artifact Arpack 147.2 KiB Installed artifact Libiconv 1.9 MiB Installed artifact LSODA 24.9 KiB Installed artifact libsodium 1.6 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact FFTW 2.2 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a2598c62] + StochasticGene v1.5.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v3.0.0 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.192.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.16.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [d4d017d3] + ExponentialUtilities v1.28.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff 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v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [a2598c62] + StochasticGene v1.5.10 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.5.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/13603b5774231264b3bb795ba1eb6a519f49fc21/build.log` Installation completed after 72.89s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4602.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4364.0 ms ✓ MacroTools 1682.1 ms ✓ InlineStrings 851.6 ms ✓ Reexport 1128.2 ms ✓ ConstructionBase 2224.8 ms ✓ IrrationalConstants 1033.5 ms ✓ DataValueInterfaces 851.3 ms ✓ StatsAPI 891.5 ms ✓ LazilyInitializedFields 1050.7 ms ✓ VersionParsing 795.9 ms ✓ CommonSolve 1270.1 ms ✓ TranscodingStreams 905.6 ms ✓ LaTeXStrings 1161.6 ms ✓ Statistics 1011.5 ms ✓ StaticArraysCore 1301.0 ms ✓ EnzymeCore 795.6 ms ✓ IfElse 885.3 ms ✓ PtrArrays 1113.3 ms ✓ ANSIColoredPrinters 980.8 ms ✓ ManualMemory 995.8 ms ✓ PositiveFactorizations 880.6 ms ✓ DataAPI 889.6 ms ✓ SciMLPublic 3987.6 ms ✓ ExproniconLite 1172.3 ms ✓ CommonWorldInvalidations 1114.3 ms ✓ FastPower 1137.3 ms ✓ InvertedIndices 936.1 ms ✓ InverseFunctions 847.4 ms ✓ CompositionsBase 1131.5 ms ✓ AbstractTrees 821.0 ms ✓ SimpleUnPack 839.8 ms ✓ MuladdMacro 1075.5 ms ✓ AbstractFFTs 888.5 ms ✓ EnumX 1056.5 ms ✓ WorkerUtilities 2238.8 ms ✓ FillArrays 859.0 ms ✓ ExprTools 799.1 ms ✓ UnPack 826.7 ms ✓ ConcreteStructs 1285.5 ms ✓ OrderedCollections 1534.4 ms ✓ FunctionWrappers 1403.3 ms ✓ ADTypes 1124.5 ms ✓ DocStringExtensions 851.8 ms ✓ FastClosures 1692.8 ms ✓ Compiler 774.1 ms ✓ SIMDTypes 965.7 ms ✓ IteratorInterfaceExtensions 1868.3 ms ✓ Crayons 929.4 ms ✓ IOCapture 1089.1 ms ✓ DelimitedFiles 14152.0 ms ✓ Krylov 2491.7 ms ✓ GenericSchur 1039.0 ms ✓ NaNMath 1188.7 ms ✓ Requires 1262.3 ms ✓ SuiteSparse 1779.1 ms ✓ CpuId 2838.9 ms ✓ SentinelArrays 1104.6 ms ✓ LoggingExtras 1528.8 ms ✓ CodeTracking 1196.4 ms ✓ Compat 1190.9 ms ✓ Preferences 1922.9 ms ✓ CommonSubexpressions 1063.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 5417.7 ms ✓ RegistryInstances 1135.4 ms ✓ CodecZlib 1588.2 ms ✓ Statistics → SparseArraysExt 1034.3 ms ✓ DiffResults 1054.7 ms ✓ AliasTables 1781.0 ms ✓ ThreadingUtilities 953.0 ms ✓ Missings 1087.7 ms ✓ PooledArrays 3144.3 ms ✓ Jieko 880.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1615.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 810.8 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1781.9 ms ✓ MarkdownAST 4230.6 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1664.3 ms ✓ FillArrays → FillArraysSparseArraysExt 1036.8 ms ✓ FillArrays → FillArraysStatisticsExt 3165.7 ms ✓ TimerOutputs 902.4 ms ✓ RuntimeGeneratedFunctions 945.0 ms ✓ Parameters 3746.7 ms ✓ DataStructures 816.8 ms ✓ FunctionWrappersWrappers 778.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 2803.1 ms ✓ DifferentiationInterface 941.5 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1802.8 ms ✓ LogExpFunctions 870.8 ms ✓ TableTraits 986.6 ms ✓ Adapt 1825.6 ms ✓ PDMats 9531.3 ms ✓ JuliaInterpreter 830.8 ms ✓ Compat → CompatLinearAlgebraExt 898.4 ms ✓ PrecompileTools 1195.7 ms ✓ JLLWrappers 1514.4 ms ✓ TruncatedStacktraces 1230.8 ms ✓ SciMLLogging 2927.9 ms ✓ Setfield 16337.1 ms ✓ Moshi 4784.1 ms ✓ Accessors 1076.7 ms ✓ SortingAlgorithms 2305.8 ms ✓ QuadGK 1366.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 841.8 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1768.7 ms ✓ Tables 1155.2 ms ✓ ArrayInterface 1232.1 ms ✓ Adapt → AdaptSparseArraysExt 1214.7 ms ✓ GPUArraysCore 772.2 ms ✓ EnzymeCore → AdaptExt 1471.2 ms ✓ FillArrays → FillArraysPDMatsExt 16729.9 ms ✓ LoweredCodeUtils 2747.8 ms ✓ ChainRulesCore 1944.0 ms ✓ FilePathsBase 3038.1 ms ✓ StringManipulation 10592.0 ms ✓ StaticArrays 2135.2 ms ✓ RecipesBase 12771.5 ms ✓ Parsers 5175.4 ms ✓ Static 11242.8 ms ✓ SparseMatrixColorings 1418.0 ms ✓ libsodium_jll 1400.8 ms ✓ Rmath_jll 1354.8 ms ✓ OpenSpecFun_jll 4603.9 ms ✓ IntelOpenMP_jll 4939.8 ms ✓ oneTBB_jll 1649.2 ms ✓ Arpack_jll 1417.3 ms ✓ Git_LFS_jll 1475.1 ms ✓ FFTW_jll 1647.8 ms ✓ OpenSSH_jll 1550.9 ms ✓ LSODA_jll 1398.4 ms ✓ Libiconv_jll 1182.0 ms ✓ Expat_jll 1447.7 ms ✓ Accessors → TestExt 1915.9 ms ✓ Accessors → LinearAlgebraExt 4404.7 ms ✓ StatsBase 801.7 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2179.0 ms ✓ MaybeInplace 1319.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 921.7 ms ✓ SciMLStructures 1635.9 ms ✓ PreallocationTools 847.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 821.8 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt ┌ Warning: precompile directive │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. └ @ Revise ~/.julia/packages/Revise/KjLt4/src/precompile.jl:65 10226.5 ms ✓ Revise 2261.7 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 939.5 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 839.2 ms ✓ ADTypes → ADTypesChainRulesCoreExt 886.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2913.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 859.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2686.5 ms ✓ FilePathsBase → FilePathsBaseTestExt 943.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 33881.1 ms ✓ PrettyTables 1476.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1485.6 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1432.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 22089.3 ms ✓ ArrayLayouts 1381.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1453.4 ms ✓ Adapt → AdaptStaticArraysExt 1378.9 ms ✓ Accessors → StaticArraysExt 3350.6 ms ✓ JSON 916.3 ms ✓ InlineStrings → ParsersExt 887.8 ms ✓ BitTwiddlingConvenienceFunctions 2063.0 ms ✓ CPUSummary 3548.0 ms ✓ StaticArrayInterface 1648.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1268.9 ms ✓ ZeroMQ_jll 1364.2 ms ✓ Rmath 4070.6 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10026.6 ms ✓ MKL_jll 1257.7 ms ✓ Arpack 1437.6 ms ✓ Git_jll 4595.7 ms ✓ SciMLOperators 1517.5 ms ✓ PDMats → StatsBaseExt 1288.1 ms ✓ FiniteDiff 3604.8 ms ✓ SymbolicIndexingInterface 1248.1 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 39651.9 ms ✓ ExponentialUtilities 3967.3 ms ✓ Revise → DistributedExt 86914.4 ms ✓ DataFrames 3539.5 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 1632.7 ms ✓ Conda 2555.9 ms ✓ WeakRefStrings 1740.9 ms ✓ PolyesterWeave 1593.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1125.6 ms ✓ CloseOpenIntervals 1324.1 ms ✓ LayoutPointers 5001.3 ms ✓ ZMQ 3876.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 4935.8 ms ✓ FastGaussQuadrature 2583.3 ms ✓ HypergeometricFunctions 1298.8 ms ✓ DiffRules 6569.3 ms ✓ FFTW 1039.1 ms ✓ Git 1031.2 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1547.5 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1353.1 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1288.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 971.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3409.3 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 3655.2 ms ✓ RecursiveArrayTools 4944.3 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 7229.8 ms ✓ LazyArrays 24025.5 ms ✓ CSV 1552.4 ms ✓ StrideArraysCore 12996.7 ms ✓ IJulia 2733.2 ms ✓ StatsFuns 6579.8 ms ✓ ForwardDiff 37417.2 ms ✓ Documenter 1771.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1274.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 21755.5 ms ✓ SciMLBase 2773.1 ms ✓ LazyArrays → LazyArraysStaticArraysExt 1533.3 ms ✓ Polyester 7438.2 ms ✓ IJulia → IJuliaReviseExt 2728.6 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 912.0 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 6806.0 ms ✓ Distributions 1625.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1006.4 ms ✓ FastPower → FastPowerForwardDiffExt 1196.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1055.6 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1149.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2083.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2611.3 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2056.6 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 1660.9 ms ✓ FastBroadcast 2742.0 ms ✓ Distributions → DistributionsTestExt 2292.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 2617.1 ms ✓ MultivariateStats 3114.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2224.8 ms ✓ NLSolversBase 15172.2 ms ✓ LinearSolve 5904.7 ms ✓ SciMLJacobianOperators 1434.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 1911.3 ms ✓ LineSearches 4278.9 ms ✓ LinearSolve → LinearSolveEnzymeExt 7992.8 ms ✓ LinearSolve → LinearSolveSparseArraysExt 9158.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 9844.0 ms ✓ LineSearch 15332.3 ms ✓ NonlinearSolveBase 6302.5 ms ✓ DiffEqBase 6100.7 ms ✓ Optim 2969.6 ms ✓ LineSearch → LineSearchLineSearchesExt 3663.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 3273.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2915.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 5884.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3002.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 3889.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 7812.2 ms ✓ BracketingNonlinearSolve 3605.8 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 3648.9 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3676.0 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5455.4 ms ✓ LSODA 9457.9 ms ✓ OrdinaryDiffEqCore 29769.6 ms ✓ NonlinearSolveQuasiNewton 16810.9 ms ✓ NonlinearSolveSpectralMethods 45838.7 ms ✓ NonlinearSolveFirstOrder 3484.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 3555.2 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 7659.7 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3814.9 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3289.2 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 17313.4 ms ✓ SimpleNonlinearSolve 7011.0 ms ✓ OrdinaryDiffEqStabilizedRK 5234.9 ms ✓ OrdinaryDiffEqFunctionMap 63927.9 ms ✓ OrdinaryDiffEqVerner 5625.9 ms ✓ OrdinaryDiffEqQPRK 6100.4 ms ✓ OrdinaryDiffEqSymplecticRK 8948.6 ms ✓ OrdinaryDiffEqLowOrderRK 6150.0 ms ✓ OrdinaryDiffEqFeagin 7774.0 ms ✓ OrdinaryDiffEqSSPRK 6445.6 ms ✓ OrdinaryDiffEqRKN 6425.7 ms ✓ OrdinaryDiffEqHighOrderRK 5585.3 ms ✓ OrdinaryDiffEqExplicitRK 13098.5 ms ✓ OrdinaryDiffEqTsit5 8310.2 ms ✓ OrdinaryDiffEqLinear 6480.2 ms ✓ OrdinaryDiffEqPRK 8860.0 ms ✓ OrdinaryDiffEqLowStorageRK 12523.6 ms ✓ OrdinaryDiffEqDifferentiation 3523.0 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6694.1 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 5262.2 ms ✓ OrdinaryDiffEqNordsieck 8900.9 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 33956.8 ms ✓ NonlinearSolve 12925.8 ms ✓ OrdinaryDiffEqExtrapolation 39711.9 ms ✓ OrdinaryDiffEqRosenbrock 11613.2 ms ✓ OrdinaryDiffEqExponentialRK 12165.2 ms ✓ OrdinaryDiffEqNonlinearSolve 12572.4 ms ✓ OrdinaryDiffEqIMEXMultistep 12752.4 ms ✓ OrdinaryDiffEqStabilizedIRK 12682.8 ms ✓ OrdinaryDiffEqPDIRK 14898.7 ms ✓ OrdinaryDiffEqSDIRK 51490.7 ms ✓ OrdinaryDiffEqFIRK 28621.3 ms ✓ OrdinaryDiffEqBDF 68781.4 ms ✓ OrdinaryDiffEqDefault 22285.2 ms ✓ OrdinaryDiffEq 45121.5 ms ✓ StochasticGene 296 dependencies successfully precompiled in 1644 seconds. 39 already precompiled. 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Revise │ ┌ Warning: precompile directive │ │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. │ └ @ Revise ~/.julia/packages/Revise/KjLt4/src/precompile.jl:65 └ Precompilation completed after 1633.74s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_1BcO54/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [e30172f5] Documenter v1.16.1 [7a1cc6ca] FFTW v1.10.0 [7073ff75] IJulia v1.33.0 ⌅ [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 [429524aa] Optim v1.13.3 [1dea7af3] OrdinaryDiffEq v6.103.0 [295af30f] Revise v3.12.3 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.8 [a2598c62] StochasticGene v1.5.10 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_1BcO54/Manifest.toml` [47edcb42] ADTypes v1.19.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v3.0.0 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.192.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [d4d017d3] ExponentialUtilities v1.28.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [34004b35] 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Testing Running tests... Sampling StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:20 Expression: isapprox(h1, h2, rtol = 0.05) Evaluated: isapprox([0.4089659166259888, 0.2763199168963797, 2.6206537457393315, 1.0], [0.33, 0.19, 2.5, 1.0]; rtol = 0.05) Stacktrace: [1] top-level scope @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:20 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Histogram count: 6774.0 Sampling Sampling Sampling StochasticGene: Test Failed at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:29 Expression: isapprox(h1, h2, rtol = 0.2) Evaluated: isapprox([3.746798822985054e-32, 2.031324570650122e-30, 5.444802768489711e-29, 9.727942473111925e-28, 1.3116023223104316e-26, 1.4280254489862174e-25, 1.3098490392790146e-24, 1.0418283845313077e-23, 7.337146475221139e-23, 4.647969833063848e-22 … 0.004436772362074171, 0.004431052902679982, 0.004425340816336097, 0.00441963609354437, 0.004413938724805686, 0.004408248700620924, 0.004402566011491452, 0.004396890647918151, 0.004391222600402391, 0.004385561859446029], [2.995451646839898e-6, 1.691577226815468e-6, 8.436570084938095e-7, 6.106582695814975e-7, 3.835573014194407e-6, 6.196170111423094e-6, 3.1276450044274625e-6, 6.277385833761719e-7, 2.0578026981884604e-6, 5.206215140221394e-7 … 0.003459603814668417, 0.003393008127202821, 0.0034697196152961023, 0.003493323150094035, 0.00331629663910954, 0.0034123967450725512, 0.0034166116620007536, 0.003377834426261293, 0.003382049343189495, 0.003323883489580304]; rtol = 0.2) Stacktrace: [1] top-level scope @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:13 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:29 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] No rate file, set rate to prior initial: [0.01, 0.01, 0.1, 0.12, 0.12, 1.0, 0.0, 0.1, 1.0, 0.1] Sampling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1484 running 1 of 1 signal (10): User defined signal 1 jl_gc_small_alloc_inner at /source/src/gc-stock.c:726 jl_gc_small_alloc_noinline at /source/src/gc-stock.c:783 [inlined] jl_gc_alloc_ at /source/src/gc-stock.c:797 jl_alloc_genericmemory_unchecked at /source/src/genericmemory.c:41 GenericMemory at ./boot.jl:588 [inlined] Array at ./boot.jl:648 [inlined] Array at ./boot.jl:661 [inlined] similar at ./array.jl:407 [inlined] similar at ./abstractarray.jl:836 [inlined] similar at ./abstractarray.jl:825 [inlined] _unsafe_getindex at ./multidimensional.jl:996 [inlined] _getindex at ./multidimensional.jl:984 [inlined] getindex at ./abstractarray.jl:1360 [inlined] forward at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:974 forward at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1059 [inlined] _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1647 unknown function (ip: 0x74be06f5161c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1832 unknown function (ip: 0x74be06f06b1e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:486 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:491 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x74be06f60dd9) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x74be06f5898c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_trace#191 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:282 test_fit_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:262 unknown function (ip: 0x74be073df2df) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_54631.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_65414.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74be5b6de249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_38735.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007aec8b6ad0f0 Total snapshots: 431. Utilization: 0% ╎431 @Base/task.jl:1168 wait_forever() 430╎ 431 @Base/task.jl:1246 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_38735.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) Allocations: 38327964 (Pool: 38326865; Big: 1099); GC: 46 [1484] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:11 < at ./int.jl:559 [inlined] checkindex at ./abstractarray.jl:757 [inlined] checkbounds_indices at ./abstractarray.jl:728 [inlined] checkbounds at ./abstractarray.jl:684 [inlined] checkbounds at ./abstractarray.jl:702 [inlined] _setindex! at ./array.jl:1036 [inlined] setindex! at ./array.jl:1031 [inlined] set_b at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:693 _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1646 unknown function (ip: 0x74be06f5161c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1832 unknown function (ip: 0x74be06f06b1e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:486 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:491 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x74be06f60dd9) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x74be06f5898c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_trace#191 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:282 test_fit_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:262 unknown function (ip: 0x74be073df2df) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_54631.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_65414.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x74be5b6de249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 4708716521 (Pool: 4708715334; Big: 1187); GC: 6047 PkgEval terminated after 2759.66s: test duration exceeded the time limit