Package evaluation to test SBMLImporter on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T22:44:07.387 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.57s ################################################################################ # Installation # Installing SBMLImporter... Resolving package versions... Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Glob ───────────────────────────── v1.3.1 Installed FastPower ──────────────────────── v1.2.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed SymbolicUtils ──────────────────── v3.32.0 Installed EnzymeCore ─────────────────────── v0.8.17 Installed NonlinearSolveSpectralMethods ──── v1.6.0 Installed Functors ───────────────────────── v0.5.2 Installed OrderedCollections ─────────────── v1.8.1 Installed PreallocationTools ─────────────── v0.4.34 Installed CpuId ──────────────────────────── v0.3.1 Installed Optim ──────────────────────────── v1.13.3 Installed QuadGK ─────────────────────────── v2.11.2 Installed NaNMath ────────────────────────── v1.1.3 Installed StaticArrayInterface ───────────── v1.8.0 Installed DiffEqCallbacks ────────────────── v4.10.1 Installed DispatchDoctor ─────────────────── v0.4.26 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed NonlinearSolveBase ─────────────── v2.4.0 Installed SBML_jll ───────────────────────── v5.20.1+0 Installed DynamicQuantities ──────────────── v1.10.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed EnumX ──────────────────────────── v1.0.5 Installed SCCNonlinearSolve ──────────────── v1.6.0 Installed NLSolversBase ──────────────────── v7.10.0 Installed LinearSolve ────────────────────── v3.48.0 Installed JumpProcesses ──────────────────── v9.19.2 Installed BracketingNonlinearSolve ───────── v1.6.0 Installed DiffEqBase ─────────────────────── v6.192.0 Installed JuliaFormatter ─────────────────── v2.2.0 Installed Jieko ──────────────────────────── v0.2.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed SBMLImporter ───────────────────── v3.1.0 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.3.1 Installed Preferences ────────────────────── v1.5.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed SortingAlgorithms ──────────────── v1.2.2 Installed NonlinearSolve ─────────────────── v4.12.0 Installed Format ─────────────────────────── v1.3.7 Installed RecursiveArrayTools ────────────── v3.39.0 Installed UnPack ─────────────────────────── v1.0.2 Installed ADTypes ────────────────────────── v1.19.0 Installed Inflate ────────────────────────── v0.1.5 Installed MLStyle ────────────────────────── v0.4.17 Installed Catalyst ───────────────────────── v15.0.8 Installed DataStructures ─────────────────── v0.18.22 Installed MacroTools ─────────────────────── v0.5.16 Installed DiffResults ────────────────────── v1.1.0 Installed ManualMemory ───────────────────── v0.1.8 Installed TermInterface ──────────────────── v2.0.0 Installed URIs ───────────────────────────── v1.6.1 Installed FillArrays ─────────────────────── v1.15.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed Tricks ─────────────────────────── v0.1.13 Installed ExprTools ──────────────────────── v0.1.10 Installed SciMLJacobianOperators ─────────── v0.1.11 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed ArrayInterface ─────────────────── v7.22.0 Installed StatsBase ──────────────────────── v0.34.8 Installed RandomNumbers ──────────────────── v1.6.0 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed CommonSubexpressions ───────────── v0.3.1 Installed LoggingExtras ──────────────────── v1.2.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed TruncatedStacktraces ───────────── v1.4.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed ConcreteStructs ────────────────── v0.2.3 Installed IrrationalConstants ────────────── v0.2.6 Installed IntegerMathUtils ───────────────── v0.1.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed ArrayLayouts ───────────────────── v1.12.2 Installed NonlinearSolveQuasiNewton ──────── v1.11.0 Installed BlockArrays ────────────────────── v1.9.3 Installed CompositeTypes ─────────────────── v0.1.4 Installed Setfield ───────────────────────── v1.1.2 Installed PDMats ─────────────────────────── v0.11.36 Installed ResettableStacks ───────────────── v1.1.1 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed FindFirstFunctions ─────────────── v1.4.2 Installed ForwardDiff ────────────────────── v1.3.0 Installed Moshi ──────────────────────────── v0.3.7 Installed DifferentiationInterface ───────── v0.7.12 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed Bijections ─────────────────────── v0.2.2 Installed ComponentArrays ────────────────── v0.15.30 Installed Unityper ───────────────────────── v0.1.6 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed LineSearch ─────────────────────── v0.1.4 Installed CommonSolve ────────────────────── v0.2.4 Installed Combinatorics ──────────────────── v1.0.2 Installed DynamicPolynomials ─────────────── v0.6.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed RecipesBase ────────────────────── v1.3.4 Installed SciMLOperators ─────────────────── v1.13.0 Installed DomainSets ─────────────────────── v0.7.16 Installed DataAPI ────────────────────────── v1.16.0 Installed TaskLocalValues ────────────────── v0.1.3 Installed SciMLStructures ────────────────── v1.7.0 Installed StaticArraysCore ───────────────── v1.4.4 Installed StaticArrays ───────────────────── v1.9.15 Installed Krylov ─────────────────────────── v0.10.3 Installed MultivariatePolynomials ────────── v0.5.9 Installed SciMLPublic ────────────────────── v1.0.0 Installed Latexify ───────────────────────── v0.16.10 Installed FunctionWrappers ───────────────── v1.1.3 Installed Requires ───────────────────────── v1.3.1 Installed Symbolics ──────────────────────── v6.57.0 Installed LogExpFunctions ────────────────── v0.3.29 Installed NonlinearSolveFirstOrder ───────── v1.10.0 Installed Rmath ──────────────────────────── v0.9.0 Installed DiffRules ──────────────────────── v1.15.1 Installed JuliaSyntax ────────────────────── v0.4.10 Installed FiniteDiff ─────────────────────── v2.29.0 Installed SciMLBase ──────────────────────── v2.127.0 Installed Distributions ──────────────────── v0.25.122 Installed FastClosures ───────────────────── v0.3.2 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed TestItems ──────────────────────── v1.0.0 Installed Polyester ──────────────────────── v0.7.18 Installed StatsFuns ──────────────────────── v1.5.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed Unitful ────────────────────────── v1.25.1 Installed SymbolicLimits ─────────────────── v0.2.3 Installed Primes ─────────────────────────── v0.5.7 Installed ThreadingUtilities ─────────────── v0.5.5 Installed MutableArithmetics ─────────────── v1.6.7 Installed Accessors ──────────────────────── v0.1.42 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed Adapt ──────────────────────────── v4.4.0 Installed ConstructionBase ───────────────── v1.6.0 Installed RuntimeGeneratedFunctions ──────── v0.5.16 Installed HypergeometricFunctions ────────── v0.3.28 Installed PoissonRandom ──────────────────── v0.4.7 Installed SBML ───────────────────────────── v1.6.0 Installed Graphs ─────────────────────────── v1.13.1 Installed Random123 ──────────────────────── v1.7.1 Installed Compat ─────────────────────────── v4.18.1 Installed SymbolicIndexingInterface ──────── v0.3.46 Installed Statistics ─────────────────────── v1.11.1 Installed StrideArraysCore ───────────────── v0.5.8 Installed ModelingToolkit ────────────────── v9.84.0 Installed PositiveFactorizations ─────────── v0.2.4 Installed LazyArrays ─────────────────────── v2.9.3 Installed PrecompileTools ────────────────── v1.3.3 Installed StatsAPI ───────────────────────── v1.7.1 Installed ExproniconLite ─────────────────── v0.10.14 Installed TimerOutputs ───────────────────── v0.5.29 Installed OffsetArrays ───────────────────── v1.17.0 Installed ChainRulesCore ─────────────────── v1.26.0 Installed ReactionNetworkImporters ───────── v0.16.1 Installed IfElse ─────────────────────────── v0.1.1 Installed CPUSummary ─────────────────────── v0.2.7 Installed Parameters ─────────────────────── v0.12.3 Installed PtrArrays ──────────────────────── v1.3.0 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed MuladdMacro ────────────────────── v0.2.4 Installed SciMLLogging ───────────────────── v1.5.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed SimpleNonlinearSolve ───────────── v2.9.0 Installed IntervalSets ───────────────────── v0.7.13 Installed SpecialFunctions ───────────────── v2.6.1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed LineSearches ───────────────────── v7.5.1 Installed CommonMark ─────────────────────── v0.9.1 Installing 7 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact SBML 5.8 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [210efffb] + SBMLImporter v3.1.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b0b7db55] + ComponentArrays v0.15.30 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.192.0 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.15.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.2.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.2 [ba0b0d4f] + Krylov v0.10.3 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.3 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.48.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.84.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.4.0 [5959db7a] + NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.11.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.16.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [e5567a89] + SBML v1.6.0 [210efffb] + SBMLImporter v3.1.0 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.127.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.57.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [bb12108a] + SBML_jll v5.20.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 17.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4351.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4159.2 ms ✓ MacroTools 797.3 ms ✓ Reexport 1170.7 ms ✓ ConstructionBase 2014.6 ms ✓ IrrationalConstants 849.9 ms ✓ StatsAPI 2381.6 ms ✓ Format 1070.6 ms ✓ IntervalSets 1949.5 ms ✓ Combinatorics 24688.0 ms ✓ JuliaSyntax 1237.8 ms ✓ Inflate 1003.2 ms ✓ TermInterface 863.0 ms ✓ CommonSolve 876.1 ms ✓ LaTeXStrings 880.6 ms ✓ Glob 779.5 ms ✓ TestItems 1133.9 ms ✓ Statistics 941.9 ms ✓ Tricks 995.6 ms ✓ StaticArraysCore 1300.5 ms ✓ EnzymeCore 923.5 ms ✓ CompositeTypes 804.6 ms ✓ IfElse 815.7 ms ✓ PtrArrays 835.6 ms ✓ TaskLocalValues 944.9 ms ✓ ManualMemory 1364.8 ms ✓ PositiveFactorizations 1217.4 ms ✓ DataAPI 989.3 ms ✓ SciMLPublic 3475.0 ms ✓ ExproniconLite 810.7 ms ✓ CommonWorldInvalidations 926.4 ms ✓ FindFirstFunctions 1250.9 ms ✓ URIs 822.7 ms ✓ FastPower 24036.3 ms ✓ MLStyle 1683.7 ms ✓ RandomNumbers 916.7 ms ✓ InverseFunctions 866.9 ms ✓ CompositionsBase 1115.5 ms ✓ AbstractTrees 884.7 ms ✓ MuladdMacro 931.0 ms ✓ EnumX 1076.9 ms ✓ Bijections 2214.1 ms ✓ FillArrays 954.5 ms ✓ ExprTools 816.8 ms ✓ IntegerMathUtils 879.9 ms ✓ UnPack 862.8 ms ✓ ConcreteStructs 1300.0 ms ✓ OrderedCollections 1522.2 ms ✓ FunctionWrappers 1434.2 ms ✓ ADTypes 1218.1 ms ✓ DocStringExtensions 844.0 ms ✓ FastClosures 1668.6 ms ✓ OffsetArrays 783.9 ms ✓ SIMDTypes 795.9 ms ✓ IteratorInterfaceExtensions 14382.5 ms ✓ Krylov 1009.2 ms ✓ NaNMath 1154.7 ms ✓ Requires 1397.1 ms ✓ SuiteSparse 1867.2 ms ✓ CpuId 31136.9 ms ✓ Unitful 1101.6 ms ✓ LoggingExtras 1187.9 ms ✓ Compat 1159.0 ms ✓ Preferences 11104.5 ms ✓ MutableArithmetics 1713.6 ms ✓ CommonSubexpressions 3261.0 ms ✓ SimpleTraits 877.3 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 819.6 ms ✓ IntervalSets → IntervalSetsRandomExt 790.7 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1376.8 ms ✓ Statistics → SparseArraysExt 811.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 918.7 ms ✓ DiffResults 962.4 ms ✓ AliasTables 1780.5 ms ✓ ThreadingUtilities 984.6 ms ✓ Missings 3236.6 ms ✓ Jieko 1904.5 ms ✓ Random123 935.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1628.7 ms ✓ InverseFunctions → InverseFunctionsTestExt 909.2 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1527.9 ms ✓ FillArrays → FillArraysSparseArraysExt 987.7 ms ✓ FillArrays → FillArraysStatisticsExt 3060.0 ms ✓ TimerOutputs 930.1 ms ✓ RuntimeGeneratedFunctions 1123.8 ms ✓ Primes 969.8 ms ✓ Parameters 790.4 ms ✓ FunctionWrappersWrappers 820.7 ms ✓ ADTypes → ADTypesConstructionBaseExt 1865.1 ms ✓ DifferentiationInterface 758.3 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1415.5 ms ✓ LogExpFunctions 924.7 ms ✓ Adapt 1872.4 ms ✓ PDMats 2014.5 ms ✓ Unitful → ConstructionBaseUnitfulExt 2097.8 ms ✓ Unitful → PrintfExt 1961.1 ms ✓ Unitful → InverseFunctionsUnitfulExt 845.8 ms ✓ Compat → CompatLinearAlgebraExt 907.1 ms ✓ PrecompileTools 1162.8 ms ✓ JLLWrappers 3771.0 ms ✓ DispatchDoctor 1497.1 ms ✓ TruncatedStacktraces 1292.2 ms ✓ SciMLLogging 1274.7 ms ✓ Unityper 2928.4 ms ✓ Setfield 16656.2 ms ✓ Moshi 5034.5 ms ✓ Accessors 1355.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 910.6 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1075.2 ms ✓ PoissonRandom 1192.5 ms ✓ ArrayInterface 1317.3 ms ✓ Adapt → AdaptSparseArraysExt 1169.8 ms ✓ GPUArraysCore 771.6 ms ✓ EnzymeCore → AdaptExt 857.6 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1444.1 ms ✓ FillArrays → FillArraysPDMatsExt 2666.7 ms ✓ ChainRulesCore 3909.2 ms ✓ DataStructures 1300.4 ms ✓ Functors 12953.7 ms ✓ StaticArrays 13225.6 ms ✓ CommonMark 2792.4 ms ✓ RecipesBase 5186.4 ms ✓ Static 1433.8 ms ✓ Rmath_jll 1438.4 ms ✓ OpenSpecFun_jll 5009.7 ms ✓ IntelOpenMP_jll 5074.2 ms ✓ oneTBB_jll 1455.6 ms ✓ Libiconv_jll 1478.1 ms ✓ JpegTurbo_jll 975.7 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 8933.8 ms ✓ DynamicQuantities 1725.8 ms ✓ Accessors → TestExt 2417.3 ms ✓ Accessors → IntervalSetsExt 2465.3 ms ✓ Accessors → LinearAlgebraExt 2264.9 ms ✓ Accessors → UnitfulExt 783.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2025.8 ms ✓ MaybeInplace 1311.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 898.3 ms ✓ SciMLStructures 1759.9 ms ✓ PreallocationTools 861.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 852.8 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1366.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 847.8 ms ✓ ADTypes → ADTypesChainRulesCoreExt 895.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2952.5 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1487.8 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 871.4 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1601.3 ms ✓ SortingAlgorithms 2795.0 ms ✓ QuadGK 3924.2 ms ✓ ArnoldiMethod 1470.8 ms ✓ ResettableStacks 1485.9 ms ✓ StaticArrays → StaticArraysStatisticsExt 1511.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1462.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5099.4 ms ✓ DomainSets 23265.6 ms ✓ ArrayLayouts 1493.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1418.7 ms ✓ Adapt → AdaptStaticArraysExt 1556.4 ms ✓ Accessors → StaticArraysExt 64578.1 ms ✓ JuliaFormatter 1364.0 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 958.9 ms ✓ BitTwiddlingConvenienceFunctions 2213.4 ms ✓ CPUSummary 3884.2 ms ✓ StaticArrayInterface 1466.8 ms ✓ Rmath 5126.2 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10558.8 ms ✓ MKL_jll 1469.0 ms ✓ XML2_jll 1563.3 ms ✓ Ghostscript_jll 1922.6 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 3915.2 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 4874.1 ms ✓ SciMLOperators 1370.0 ms ✓ FiniteDiff 3928.0 ms ✓ SymbolicIndexingInterface 1320.5 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 7329.4 ms ✓ MultivariatePolynomials 5064.9 ms ✓ StatsBase 9956.0 ms ✓ Graphs 1540.2 ms ✓ DomainSets → DomainSetsRandomExt 3575.8 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 5015.6 ms ✓ BlockArrays 1804.8 ms ✓ PolyesterWeave 1076.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1609.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 2043.4 ms ✓ ComponentArrays 1116.6 ms ✓ CloseOpenIntervals 1317.9 ms ✓ LayoutPointers 3981.2 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2481.6 ms ✓ HypergeometricFunctions 1309.8 ms ✓ DiffRules 1462.6 ms ✓ SBML_jll 6184.3 ms ✓ Latexify 1041.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 2155.9 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 2042.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1360.4 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1028.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3787.2 ms ✓ RecursiveArrayTools 4632.4 ms ✓ DynamicPolynomials 1940.2 ms ✓ PDMats → StatsBaseExt 7120.2 ms ✓ LazyArrays 3104.9 ms ✓ BlockArrays → BlockArraysAdaptExt 1987.3 ms ✓ StrideArraysCore 2906.5 ms ✓ StatsFuns 6639.1 ms ✓ ForwardDiff 17170.8 ms ✓ SBML 2451.3 ms ✓ Latexify → SparseArraysExt 4270.9 ms ✓ Unitful → LatexifyExt 1733.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 24919.7 ms ✓ SciMLBase 1529.4 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 53698.7 ms ✓ SymbolicUtils 3713.3 ms ✓ LazyArrays → LazyArraysStaticArraysExt 4136.6 ms ✓ LazyArrays → LazyArraysBlockArraysExt 1935.3 ms ✓ Polyester 3356.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1023.8 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9427.2 ms ✓ Distributions 2049.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1219.6 ms ✓ FastPower → FastPowerForwardDiffExt 2608.0 ms ✓ Unitful → ForwardDiffExt 1555.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1258.9 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1431.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2724.9 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3279.1 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2688.4 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 3629.5 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2777.0 ms ✓ SCCNonlinearSolve 2939.5 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 7621.3 ms ✓ SymbolicLimits 1832.7 ms ✓ FastBroadcast 3232.2 ms ✓ Distributions → DistributionsTestExt 3335.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 4386.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2236.6 ms ✓ NLSolversBase 19808.8 ms ✓ LinearSolve 7497.2 ms ✓ SciMLJacobianOperators 2083.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 54778.9 ms ✓ Symbolics 2679.0 ms ✓ LineSearches 6074.1 ms ✓ LinearSolve → LinearSolveEnzymeExt 8458.2 ms ✓ LinearSolve → LinearSolveSparseArraysExt 9031.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 9589.4 ms ✓ LineSearch 14897.7 ms ✓ NonlinearSolveBase 5867.9 ms ✓ DiffEqBase 10455.3 ms ✓ Symbolics → SymbolicsForwardDiffExt 10412.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 6652.3 ms ✓ Optim 3153.7 ms ✓ LineSearch → LineSearchLineSearchesExt 3527.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2911.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 5968.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 2879.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 3834.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8163.8 ms ✓ BracketingNonlinearSolve 3779.1 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4870.9 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3685.3 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3579.3 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 8637.5 ms ✓ DiffEqCallbacks 10781.3 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 29154.4 ms ✓ NonlinearSolveQuasiNewton 16684.2 ms ✓ NonlinearSolveSpectralMethods 45480.2 ms ✓ NonlinearSolveFirstOrder 2864.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7822.0 ms ✓ DiffEqNoiseProcess 4568.0 ms ✓ DiffEqCallbacks → DiffEqCallbacksFunctorsExt 7991.4 ms ✓ JumpProcesses 7606.5 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3959.8 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3288.9 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 18492.8 ms ✓ SimpleNonlinearSolve 4625.5 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 32773.5 ms ✓ NonlinearSolve 302706.0 ms ✓ ModelingToolkit 74092.9 ms ✓ Catalyst 58896.7 ms ✓ ReactionNetworkImporters 95633.9 ms ✓ SBMLImporter 57064.7 ms ✓ SBMLImporter → SBMLImporterForwardDiffExt 280 dependencies successfully precompiled in 1804 seconds. 38 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1805.58s ################################################################################ # Testing # Testing SBMLImporter Status `/tmp/jl_YiLNZD/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [b0b7db55] ComponentArrays v0.15.30 [a93c6f00] DataFrames v1.8.1 [2b5f629d] DiffEqBase v6.192.0 [ccbc3e58] JumpProcesses v9.19.2 ⌅ [961ee093] ModelingToolkit v9.84.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [aea7be01] PrecompileTools v1.3.3 [b4db0fb7] ReactionNetworkImporters v0.16.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v3.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.127.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.6.1 [f43a241f] Downloads v1.7.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YiLNZD/Manifest.toml` [47edcb42] ADTypes v1.19.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [479239e8] Catalyst v15.0.8 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.30 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.192.0 [459566f4] DiffEqCallbacks v4.10.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [8d63f2c5] DispatchDoctor v0.4.26 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.10.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [64ca27bc] FindFirstFunctions v1.4.2 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.19.2 [ba0b0d4f] Krylov v0.10.3 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.9.3 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.48.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.84.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.4.0 [5959db7a] NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.11.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.16.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b4db0fb7] ReactionNetworkImporters v0.16.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [e5567a89] SBML v1.6.0 [210efffb] SBMLImporter v3.1.0 [9dfe8606] SCCNonlinearSolve v1.6.0 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.127.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.13.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.9.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [2efcf032] SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] SymbolicLimits v0.2.3 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.57.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.0.0 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.25.1 [a7c27f48] Unityper v0.1.6 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [61579ee1] Ghostscript_jll v9.55.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [94ce4f54] Libiconv_jll v1.18.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [bb12108a] SBML_jll v5.20.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Aqua Quality Check | 10 10 10m14.1s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1367 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm9MCContext20createELFSectionImplENS_9StringRefEjjjPKNS_11MCSymbolELFEbjS4_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x2d27a58f) at (unknown file) unknown function (ip: (nil)) at (unknown file) #= 62.0 ms =# precompile(Tuple{SymbolicUtils.Rule{SymbolicUtils.BasicSymbolic{Any}, SymbolicUtils.var"#term_matcher#term_matcher_constructor##11"{Tuple{SymbolicUtils.var"#literal_matcher#matcher##2"{typeof(Base.ifelse)}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.is_literal_number)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}}}, SymbolicUtils.var"#305#306"}, SymbolicUtils.BasicSymbolic{Real}}) #= 99.8 ms =# precompile(Tuple{SymbolicUtils.var"#loop#term_matcher_constructor##2", SymbolicUtils.BasicSymbolic{Real}, Base.ImmutableDict{Symbol, Any}, Tuple{SymbolicUtils.var"#literal_matcher#matcher##2"{typeof(Base.ifelse)}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.is_literal_number)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}}}) #= 94.7 ms =# precompile(Tuple{SymbolicUtils.Rule{SymbolicUtils.BasicSymbolic{Any}, SymbolicUtils.var"#term_matcher#term_matcher_constructor##11"{Tuple{SymbolicUtils.var"#literal_matcher#matcher##2"{typeof(Base.ifelse)}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}}}, SymbolicUtils.var"#307#308"}, SymbolicUtils.BasicSymbolic{Real}}) #= 106.2 ms =# precompile(Tuple{SymbolicUtils.var"#loop#term_matcher_constructor##2", SymbolicUtils.BasicSymbolic{Real}, Base.ImmutableDict{Symbol, Any}, Tuple{SymbolicUtils.var"#literal_matcher#matcher##2"{typeof(Base.ifelse)}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}, SymbolicUtils.var"#slot_matcher#matcher##3"{SymbolicUtils.Slot{typeof(SymbolicUtils.alwaystrue)}}}}) #= 25.6 ms =# precompile(Tuple{typeof(Base.iterate), Array{SymbolicUtils.Rewriters.IfElse{F, A, SymbolicUtils.Rewriters.Empty} where A where F, 1}}) #= 30.8 ms =# precompile(Tuple{typeof(Base.iterate), Array{SymbolicUtils.Rewriters.IfElse{F, A, SymbolicUtils.Rewriters.Empty} where A where F, 1}, Int64}) #= 22.9 ms =# precompile(Tuple{typeof(TermInterface.operation), SymbolicUtils.BasicSymbolic{Real}}) #= 16.2 ms =# precompile(Tuple{typeof(Base.:(!=)), Function, Function}) #= 21.1 ms =# precompile(Tuple{typeof(Base.eachindex), SymbolicUtils.SmallVec{Any, Array{Any, 1}}}) #= 25.9 ms =# precompile(Tuple{typeof(Combinatorics.combinations), Base.OneTo{Int64}, Int64}) #= 170.4 ms =# precompile(Tuple{Combinatorics.var"#combinations##3#combinations##4"{Combinatorics.var"#reorder#combinations##0"{Base.OneTo{Int64}}}, Array{Int64, 1}}) #= 199.0 ms =# precompile(Tuple{typeof(Base.maybeview), SymbolicUtils.SmallVec{Any, Array{Any, 1}}, Array{Int64, 1}}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_38735.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000722200983580 Total snapshots: 400. Utilization: 0% ╎400 @Base/task.jl:1168 wait_forever() 399╎ 400 @Base/task.jl:1246 wait() [1367] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/SBMLImporter/iDwV5/test/curated_jump_test.jl:8 _ZN4llvm13PMDataManager16findAnalysisPassEPKvb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm17PMTopLevelManager16findAnalysisPassEPKv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13PMDataManager23verifyPreservedAnalysisEPNS_4PassE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) operator() at /source/src/jitlayers.cpp:1623 addModule at /source/src/jitlayers.cpp:2114 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #collect_vars!#23 at /home/pkgeval/.julia/packages/Catalyst/8qDWw/src/reaction.jl:353 collect_vars! at /home/pkgeval/.julia/packages/Catalyst/8qDWw/src/reaction.jl:350 unknown function (ip: 0x70233826b111) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #collect_scoped_vars!#55 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/utils.jl:546 collect_scoped_vars! at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/utils.jl:539 [inlined] #complete#102 at /home/pkgeval/.julia/packages/Catalyst/8qDWw/src/reactionsystem.jl:948 complete at /home/pkgeval/.julia/packages/Catalyst/8qDWw/src/reactionsystem.jl:944 unknown function (ip: 0x70233825f5ae) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #load_SBML#21 at /home/pkgeval/.julia/packages/SBMLImporter/iDwV5/src/load.jl:97 load_SBML at /home/pkgeval/.julia/packages/SBMLImporter/iDwV5/src/load.jl:74 unknown function (ip: 0x70233835eec6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 PkgEval terminated after 2721.67s: test duration exceeded the time limit