Package evaluation to test ReactionNetworkImporters on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T22:24:31.374 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.2s ################################################################################ # Installation # Installing ReactionNetworkImporters... Resolving package versions... Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed Glob ───────────────────────────── v1.3.1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed FastPower ──────────────────────── v1.2.0 Installed OrderedCollections ─────────────── v1.8.1 Installed SymbolicUtils ──────────────────── v3.32.0 Installed Optim ──────────────────────────── v1.13.3 Installed EnzymeCore ─────────────────────── v0.8.17 Installed NonlinearSolveSpectralMethods ──── v1.6.0 Installed PreallocationTools ─────────────── v0.4.34 Installed CpuId ──────────────────────────── v0.3.1 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed DispatchDoctor ─────────────────── v0.4.26 Installed DiffEqCallbacks ────────────────── v4.10.1 Installed DynamicQuantities ──────────────── v1.10.0 Installed NaNMath ────────────────────────── v1.1.3 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed NonlinearSolveBase ─────────────── v2.4.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed SCCNonlinearSolve ──────────────── v1.6.0 Installed EnumX ──────────────────────────── v1.0.5 Installed JumpProcesses ──────────────────── v9.19.2 Installed LinearSolve ────────────────────── v3.48.0 Installed NLSolversBase ──────────────────── v7.10.0 Installed JuliaFormatter ─────────────────── v2.2.0 Installed DiffEqBase ─────────────────────── v6.192.0 Installed BracketingNonlinearSolve ───────── v1.6.0 Installed Jieko ──────────────────────────── v0.2.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.3.1 Installed Preferences ────────────────────── v1.5.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed SortingAlgorithms ──────────────── v1.2.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed NonlinearSolve ─────────────────── v4.12.0 Installed RecursiveArrayTools ────────────── v3.39.0 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed MLStyle ────────────────────────── v0.4.17 Installed ADTypes ────────────────────────── v1.19.0 Installed Inflate ────────────────────────── v0.1.5 Installed Catalyst ───────────────────────── v15.0.8 Installed DataStructures ─────────────────── v0.18.22 Installed MacroTools ─────────────────────── v0.5.16 Installed URIs ───────────────────────────── v1.6.1 Installed DiffResults ────────────────────── v1.1.0 Installed TermInterface ──────────────────── v2.0.0 Installed ManualMemory ───────────────────── v0.1.8 Installed FillArrays ─────────────────────── v1.15.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed Tricks ─────────────────────────── v0.1.13 Installed SciMLJacobianOperators ─────────── v0.1.11 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed ExprTools ──────────────────────── v0.1.10 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed ArrayInterface ─────────────────── v7.22.0 Installed StatsBase ──────────────────────── v0.34.8 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed LoggingExtras ──────────────────── v1.2.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed IrrationalConstants ────────────── v0.2.6 Installed CommonSubexpressions ───────────── v0.3.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed ConcreteStructs ────────────────── v0.2.3 Installed RandomNumbers ──────────────────── v1.6.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed IntegerMathUtils ───────────────── v0.1.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed CompositeTypes ─────────────────── v0.1.4 Installed ArrayLayouts ───────────────────── v1.12.2 Installed Setfield ───────────────────────── v1.1.2 Installed BlockArrays ────────────────────── v1.9.3 Installed PDMats ─────────────────────────── v0.11.36 Installed NonlinearSolveQuasiNewton ──────── v1.11.0 Installed ResettableStacks ───────────────── v1.1.1 Installed CompositionsBase ───────────────── v0.1.2 Installed FindFirstFunctions ─────────────── v1.4.2 Installed DocStringExtensions ────────────── v0.9.5 Installed ForwardDiff ────────────────────── v1.3.0 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Bijections ─────────────────────── v0.2.2 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed Moshi ──────────────────────────── v0.3.7 Installed DifferentiationInterface ───────── v0.7.12 Installed Unityper ───────────────────────── v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed DynamicPolynomials ─────────────── v0.6.3 Installed Combinatorics ──────────────────── v1.0.2 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed LineSearch ─────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed RecipesBase ────────────────────── v1.3.4 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed DataAPI ────────────────────────── v1.16.0 Installed DomainSets ─────────────────────── v0.7.16 Installed SciMLStructures ────────────────── v1.7.0 Installed SciMLOperators ─────────────────── v1.13.0 Installed StaticArrays ───────────────────── v1.9.15 Installed Krylov ─────────────────────────── v0.10.3 Installed TaskLocalValues ────────────────── v0.1.3 Installed StaticArraysCore ───────────────── v1.4.4 Installed SciMLPublic ────────────────────── v1.0.0 Installed FunctionWrappers ───────────────── v1.1.3 Installed MultivariatePolynomials ────────── v0.5.9 Installed Requires ───────────────────────── v1.3.1 Installed Latexify ───────────────────────── v0.16.10 Installed LogExpFunctions ────────────────── v0.3.29 Installed Symbolics ──────────────────────── v6.57.0 Installed NonlinearSolveFirstOrder ───────── v1.10.0 Installed DiffRules ──────────────────────── v1.15.1 Installed Rmath ──────────────────────────── v0.9.0 Installed FiniteDiff ─────────────────────── v2.29.0 Installed FastClosures ───────────────────── v0.3.2 Installed SciMLBase ──────────────────────── v2.127.0 Installed JuliaSyntax ────────────────────── v0.4.10 Installed Distributions ──────────────────── v0.25.122 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed Polyester ──────────────────────── v0.7.18 Installed TestItems ──────────────────────── v1.0.0 Installed JLLWrappers ────────────────────── v1.7.1 Installed Unitful ────────────────────────── v1.25.1 Installed MutableArithmetics ─────────────── v1.6.7 Installed SymbolicLimits ─────────────────── v0.2.3 Installed Primes ─────────────────────────── v0.5.7 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Accessors ──────────────────────── v0.1.42 Installed Adapt ──────────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ──────── v0.5.16 Installed ConstructionBase ───────────────── v1.6.0 Installed PoissonRandom ──────────────────── v0.4.7 Installed HypergeometricFunctions ────────── v0.3.28 Installed Random123 ──────────────────────── v1.7.1 Installed Compat ─────────────────────────── v4.18.1 Installed StrideArraysCore ───────────────── v0.5.8 Installed SymbolicIndexingInterface ──────── v0.3.46 Installed Statistics ─────────────────────── v1.11.1 Installed Graphs ─────────────────────────── v1.13.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed PositiveFactorizations ─────────── v0.2.4 Installed TimerOutputs ───────────────────── v0.5.29 Installed LazyArrays ─────────────────────── v2.9.3 Installed ExproniconLite ─────────────────── v0.10.14 Installed ReactionNetworkImporters ───────── v0.16.1 Installed PrecompileTools ────────────────── v1.3.3 Installed ModelingToolkit ────────────────── v9.84.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed CPUSummary ─────────────────────── v0.2.7 Installed IfElse ─────────────────────────── v0.1.1 Installed Parameters ─────────────────────── v0.12.3 Installed MuladdMacro ────────────────────── v0.2.4 Installed ChainRulesCore ─────────────────── v1.26.0 Installed SciMLLogging ───────────────────── v1.5.0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed SimpleNonlinearSolve ───────────── v2.9.0 Installed PtrArrays ──────────────────────── v1.3.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed IntervalSets ───────────────────── v0.7.13 Installed LineSearches ───────────────────── v7.5.1 Installed SpecialFunctions ───────────────── v2.6.1 Installed CommonMark ─────────────────────── v0.9.1 Installing 4 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [b4db0fb7] + ReactionNetworkImporters v0.16.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.8 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.192.0 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.15.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.2.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.2 [ba0b0d4f] + Krylov v0.10.3 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.3 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.48.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.84.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.4.0 [5959db7a] + NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.11.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b4db0fb7] + ReactionNetworkImporters v0.16.1 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.127.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.57.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 16.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4606.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4259.5 ms ✓ MacroTools 760.4 ms ✓ Reexport 1140.8 ms ✓ ConstructionBase 1829.1 ms ✓ IrrationalConstants 796.1 ms ✓ StatsAPI 2283.7 ms ✓ Format 1042.4 ms ✓ IntervalSets 2130.5 ms ✓ Combinatorics 24653.5 ms ✓ JuliaSyntax 987.6 ms ✓ Inflate 819.9 ms ✓ TermInterface 748.9 ms ✓ CommonSolve 825.6 ms ✓ LaTeXStrings 865.3 ms ✓ Glob 709.4 ms ✓ TestItems 1097.7 ms ✓ Statistics 915.9 ms ✓ Tricks 962.2 ms ✓ StaticArraysCore 1307.4 ms ✓ EnzymeCore 874.7 ms ✓ CompositeTypes 738.8 ms ✓ IfElse 663.3 ms ✓ PtrArrays 671.7 ms ✓ TaskLocalValues 807.7 ms ✓ ManualMemory 1001.1 ms ✓ PositiveFactorizations 688.8 ms ✓ DataAPI 746.6 ms ✓ SciMLPublic 2823.9 ms ✓ ExproniconLite 693.7 ms ✓ CommonWorldInvalidations 689.4 ms ✓ FindFirstFunctions 970.4 ms ✓ URIs 622.5 ms ✓ FastPower 21351.5 ms ✓ MLStyle 1569.3 ms ✓ RandomNumbers 903.9 ms ✓ InverseFunctions 833.8 ms ✓ CompositionsBase 1110.7 ms ✓ AbstractTrees 785.6 ms ✓ MuladdMacro 833.9 ms ✓ EnumX 955.6 ms ✓ Bijections 2125.6 ms ✓ FillArrays 858.4 ms ✓ ExprTools 824.4 ms ✓ IntegerMathUtils 745.7 ms ✓ UnPack 759.0 ms ✓ ConcreteStructs 1156.4 ms ✓ OrderedCollections 1387.4 ms ✓ FunctionWrappers 1291.7 ms ✓ ADTypes 1050.7 ms ✓ DocStringExtensions 785.3 ms ✓ FastClosures 1715.4 ms ✓ OffsetArrays 732.4 ms ✓ SIMDTypes 725.3 ms ✓ IteratorInterfaceExtensions 13503.9 ms ✓ Krylov 1007.4 ms ✓ NaNMath 1176.7 ms ✓ Requires 1145.4 ms ✓ SuiteSparse 1749.8 ms ✓ CpuId 32131.7 ms ✓ Unitful 1071.1 ms ✓ LoggingExtras 1162.3 ms ✓ Compat 1123.9 ms ✓ Preferences 11081.0 ms ✓ MutableArithmetics 1736.1 ms ✓ CommonSubexpressions 3359.0 ms ✓ SimpleTraits 798.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 752.4 ms ✓ IntervalSets → IntervalSetsRandomExt 754.7 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1304.0 ms ✓ Statistics → SparseArraysExt 771.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 843.0 ms ✓ DiffResults 957.4 ms ✓ AliasTables 1769.4 ms ✓ ThreadingUtilities 1117.9 ms ✓ Missings 3442.6 ms ✓ Jieko 1863.1 ms ✓ Random123 844.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1618.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 803.8 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1457.6 ms ✓ FillArrays → FillArraysSparseArraysExt 916.0 ms ✓ FillArrays → FillArraysStatisticsExt 3094.2 ms ✓ TimerOutputs 878.5 ms ✓ RuntimeGeneratedFunctions 1090.6 ms ✓ Primes 945.3 ms ✓ Parameters 771.3 ms ✓ FunctionWrappersWrappers 731.7 ms ✓ ADTypes → ADTypesConstructionBaseExt 2338.3 ms ✓ DifferentiationInterface 924.0 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1477.3 ms ✓ LogExpFunctions 1265.6 ms ✓ Adapt 2008.7 ms ✓ PDMats 1900.4 ms ✓ Unitful → ConstructionBaseUnitfulExt 2175.3 ms ✓ Unitful → PrintfExt 2005.9 ms ✓ Unitful → InverseFunctionsUnitfulExt 821.1 ms ✓ Compat → CompatLinearAlgebraExt 943.4 ms ✓ PrecompileTools 1148.2 ms ✓ JLLWrappers 3900.1 ms ✓ DispatchDoctor 1662.6 ms ✓ TruncatedStacktraces 1301.6 ms ✓ SciMLLogging 1209.1 ms ✓ Unityper 2992.5 ms ✓ Setfield 16595.4 ms ✓ Moshi 4947.7 ms ✓ Accessors 1524.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1064.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1038.4 ms ✓ PoissonRandom 1396.6 ms ✓ ArrayInterface 1346.3 ms ✓ Adapt → AdaptSparseArraysExt 1370.9 ms ✓ GPUArraysCore 1047.8 ms ✓ EnzymeCore → AdaptExt 947.0 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1548.5 ms ✓ FillArrays → FillArraysPDMatsExt 2823.9 ms ✓ ChainRulesCore 3723.5 ms ✓ DataStructures 12754.6 ms ✓ StaticArrays 12810.0 ms ✓ CommonMark 2765.8 ms ✓ RecipesBase 4996.5 ms ✓ Static 1456.0 ms ✓ Rmath_jll 1355.8 ms ✓ OpenSpecFun_jll 4589.0 ms ✓ IntelOpenMP_jll 4941.7 ms ✓ oneTBB_jll 1455.0 ms ✓ JpegTurbo_jll 921.9 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 9074.6 ms ✓ DynamicQuantities 1883.5 ms ✓ Accessors → TestExt 2745.1 ms ✓ Accessors → IntervalSetsExt 2615.5 ms ✓ Accessors → LinearAlgebraExt 2273.4 ms ✓ Accessors → UnitfulExt 804.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2206.2 ms ✓ MaybeInplace 1316.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 872.3 ms ✓ SciMLStructures 1654.9 ms ✓ PreallocationTools 830.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 916.4 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1537.1 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 865.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 863.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2889.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1518.1 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 843.9 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1558.7 ms ✓ SortingAlgorithms 2797.3 ms ✓ QuadGK 3801.6 ms ✓ ArnoldiMethod 1400.9 ms ✓ ResettableStacks 1407.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1532.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1599.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 4832.4 ms ✓ DomainSets 23138.9 ms ✓ ArrayLayouts 1548.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1377.9 ms ✓ Adapt → AdaptStaticArraysExt 1524.2 ms ✓ Accessors → StaticArraysExt 65009.5 ms ✓ JuliaFormatter 1299.8 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 932.0 ms ✓ BitTwiddlingConvenienceFunctions 2282.7 ms ✓ CPUSummary 3966.4 ms ✓ StaticArrayInterface 1407.7 ms ✓ Rmath 4861.1 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10662.7 ms ✓ MKL_jll 1480.3 ms ✓ Ghostscript_jll 1885.2 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 3889.4 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 4862.6 ms ✓ SciMLOperators 1441.4 ms ✓ FiniteDiff 3696.3 ms ✓ SymbolicIndexingInterface 1330.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 6821.1 ms ✓ MultivariatePolynomials 4996.3 ms ✓ StatsBase 9741.0 ms ✓ Graphs 1472.5 ms ✓ DomainSets → DomainSetsRandomExt 3515.0 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 5633.0 ms ✓ BlockArrays 1778.3 ms ✓ PolyesterWeave 1009.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1553.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1210.6 ms ✓ CloseOpenIntervals 1267.3 ms ✓ LayoutPointers 3944.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2377.9 ms ✓ HypergeometricFunctions 1247.5 ms ✓ DiffRules 6096.4 ms ✓ Latexify 975.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1588.1 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1381.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1262.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 962.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3792.4 ms ✓ RecursiveArrayTools 4720.6 ms ✓ DynamicPolynomials 2080.0 ms ✓ PDMats → StatsBaseExt 7026.3 ms ✓ LazyArrays 3100.6 ms ✓ BlockArrays → BlockArraysAdaptExt 2020.1 ms ✓ StrideArraysCore 3212.2 ms ✓ StatsFuns 6735.5 ms ✓ ForwardDiff 2417.7 ms ✓ Latexify → SparseArraysExt 4102.9 ms ✓ Unitful → LatexifyExt 1899.8 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 24251.0 ms ✓ SciMLBase 55067.6 ms ✓ SymbolicUtils 3660.5 ms ✓ LazyArrays → LazyArraysStaticArraysExt 4270.7 ms ✓ LazyArrays → LazyArraysBlockArraysExt 1930.4 ms ✓ Polyester 3355.5 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 973.5 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9748.2 ms ✓ Distributions 2043.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1214.6 ms ✓ FastPower → FastPowerForwardDiffExt 2721.3 ms ✓ Unitful → ForwardDiffExt 1628.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1452.8 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1475.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2865.3 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3327.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2833.1 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 3579.2 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2812.7 ms ✓ SCCNonlinearSolve 7958.1 ms ✓ SymbolicLimits 1894.5 ms ✓ FastBroadcast 3452.2 ms ✓ Distributions → DistributionsTestExt 3486.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 3891.8 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2228.1 ms ✓ NLSolversBase 20088.4 ms ✓ LinearSolve 7623.2 ms ✓ SciMLJacobianOperators 1937.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 58564.6 ms ✓ Symbolics 2427.3 ms ✓ LineSearches 5834.9 ms ✓ LinearSolve → LinearSolveEnzymeExt 9802.0 ms ✓ LinearSolve → LinearSolveSparseArraysExt 9814.1 ms ✓ LinearSolve → LinearSolveForwardDiffExt 10425.9 ms ✓ LineSearch 15529.9 ms ✓ NonlinearSolveBase 6183.3 ms ✓ DiffEqBase 11387.7 ms ✓ Symbolics → SymbolicsForwardDiffExt 10435.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 6533.9 ms ✓ Optim 3158.2 ms ✓ LineSearch → LineSearchLineSearchesExt 3506.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2919.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 5829.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 2741.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 3618.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 7920.4 ms ✓ BracketingNonlinearSolve 3735.9 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4520.4 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 3541.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3727.3 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9261.1 ms ✓ DiffEqCallbacks 10589.2 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 30112.1 ms ✓ NonlinearSolveQuasiNewton 17738.1 ms ✓ NonlinearSolveSpectralMethods 48001.9 ms ✓ NonlinearSolveFirstOrder 3330.2 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 7469.8 ms ✓ DiffEqNoiseProcess 8111.6 ms ✓ JumpProcesses 7381.8 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3805.0 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3381.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 18478.9 ms ✓ SimpleNonlinearSolve 3554.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 33123.3 ms ✓ NonlinearSolve 296497.4 ms ✓ ModelingToolkit 76480.8 ms ✓ Catalyst 57084.4 ms ✓ ReactionNetworkImporters 269 dependencies successfully precompiled in 1616 seconds. 38 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1616.71s ################################################################################ # Testing # Testing ReactionNetworkImporters Status `/tmp/jl_6TYlA4/Project.toml` [4c88cf16] Aqua v0.8.14 [5d742f6a] CSVFiles v1.0.2 [479239e8] Catalyst v15.0.8 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 ⌅ [961ee093] ModelingToolkit v9.84.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [b4db0fb7] ReactionNetworkImporters v0.16.1 [1bc83da4] SafeTestsets v0.1.0 ⌅ [0c5d862f] Symbolics v6.57.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_6TYlA4/Manifest.toml` [47edcb42] ADTypes v1.19.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [5d742f6a] CSVFiles v1.0.2 [479239e8] Catalyst v15.0.8 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [2b5f629d] DiffEqBase v6.192.0 [459566f4] DiffEqCallbacks v4.10.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [8d63f2c5] DispatchDoctor v0.4.26 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [497a8b3b] DoubleFloats v1.5.0 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.10.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.2.0 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.15.0 [64ca27bc] FindFirstFunctions v1.4.2 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [14197337] GenericLinearAlgebra v0.3.19 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.19.2 [ba0b0d4f] Krylov v0.10.3 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.9.3 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.48.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.84.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.4.0 [5959db7a] NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.11.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [4d1e1d77] Nullables v1.0.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.0 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [f27b6e38] Polynomials v4.1.0 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [be4d8f0f] Quadmath v0.5.13 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b4db0fb7] ReactionNetworkImporters v0.16.1 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [9dfe8606] SCCNonlinearSolve v1.6.0 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.127.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.13.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 [727e6d20] SimpleNonlinearSolve v2.9.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.0 [2efcf032] SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] SymbolicLimits v0.2.3 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.57.0 [5e66a065] TableShowUtils v0.2.7 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [1c621080] TestItems v1.0.0 [e0df1984] TextParse v1.0.3 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.25.1 [a7c27f48] Unityper v0.1.6 [ea10d353] WeakRefStrings v1.4.2 [61579ee1] Ghostscript_jll v9.55.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Quality Assurance | 10 10 10m44.6s 645.317236 seconds (59.36 M allocations: 3.820 GiB, 1.13% gc time, 13 lock conflicts, 14.55% compilation time: 25% of which was recompilation)  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ======================================================================================  cmd: /opt/julia/bin/julia 1626 running 1 of 1  signal (10): User defined signal 1 unknown function (ip: 0x7a1fb96200ec) at /lib/x86_64-linux-gnu/libc.so.6 length at /usr/local/x86_64-linux-gnu/include/c++/9.1.0/bits/char_traits.h:335 [inlined] StringRef at /source/usr/include/llvm/ADT/StringRef.h:94 [inlined] isTBAA at /source/src/llvm-late-gc-lowering.cpp:848 [inlined] isLoadFromImmut at /source/src/llvm-late-gc-lowering.cpp:864 LocalScan at /source/src/llvm-late-gc-lowering.cpp:1381 runOnFunction at /source/src/llvm-late-gc-lowering.cpp:2590 run at /source/src/llvm-late-gc-lowering.cpp:2642 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:787 operator() at /source/src/jitlayers.cpp:1508 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1469 [inlined] operator() at /source/src/jitlayers.cpp:1644 [inlined] addModule at /source/src/jitlayers.cpp:2101 jl_compile_codeinst_now at /source/src/jitlayers.cpp:682 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876 jl_compile_method_internal at /source/src/gf.c:3648 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 request at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:455 #request#21 at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:315 [inlined] request at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:313 [inlined] request at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:313 [inlined] #get#33 at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:518 [inlined] get at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:518 [inlined] #51 at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/precompile.jl:36 [inlined] withenv at ./env.jl:265 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] jl_f__apply_iterate at /source/src/builtins.c:876 macro expansion at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/precompile.jl:35 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined] macro expansion at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/precompile.jl:34 [inlined] macro expansion at /home/pkgeval/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:121 [inlined] top-level scope at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/precompile.jl:4 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7a1fb7b36a22) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 top-level scope at /home/pkgeval/.julia/packages/HTTP/ShTJs/src/HTTP.jl:643 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:309 include_package_for_output at ./loading.jl:3157 jfptr_include_package_for_output_33710.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 include_string at ./loading.jl:3013 [inlined] exec_options at ./client.jl:342 _start at ./client.jl:577 jfptr__start_65414.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a1fb94f1249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)   ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ==============================================================  ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing, from::Module) │ @ Base ./loading.jl:2896 │ [3] require_stdlib │ @ ./loading.jl:2892 [inlined] │ [4] macro expansion │ @ ./some.jl:157 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:336 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:355 └ @ Base Base.jl:346 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1326 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_38735.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_38735.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000739ea372b670 Total snapshots: 412. Utilization: 0% ╎412 @Base/task.jl:1168 wait_forever() 411╎ 412 @Base/task.jl:1246 wait() [1326] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ReactionNetworkImporters/S2GNa/test/test_nullrxs_odes.jl:1 _ZNK4llvm13AttributeList9hasFnAttrENS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZNK4llvm8CallBase25hasFnAttrOnCalledFunctionENS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm21canConstantFoldCallToEPKNS_8CallBaseEPKNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm15SCCPInstVisitor21handleCallOverdefinedERNS_8CallBaseE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) PkgEval terminated after 2737.33s: test duration exceeded the time limit