Package evaluation to test PosDefManifoldML on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T23:32:39.222 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.17s ################################################################################ # Installation # Installing PosDefManifoldML... Resolving package versions... Installed DefineSingletons ──────────── v0.1.2 Installed CompositionsBase ──────────── v0.1.2 Installed MicroCollections ──────────── v0.2.0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.18.22 Installed ThreadedScans ─────────────── v0.1.0 Installed Adapt ─────────────────────── v4.4.0 Installed InlineStrings ─────────────── v1.4.5 Installed PosDefManifoldML ──────────── v0.5.15 Installed FillArrays ────────────────── v1.15.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed StatsBase ─────────────────── v0.33.21 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed TSVD ──────────────────────── v0.4.4 Installed Combinatorics ─────────────── v1.0.3 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed InvertedIndices ───────────── v1.3.1 Installed StatsAPI ──────────────────── v1.7.1 Installed ArgCheck ──────────────────── v2.5.0 Installed InitialValues ─────────────── v0.3.1 Installed ExternalDocstrings ────────── v0.1.1 Installed PosDefManifold ────────────── v0.5.3 Installed SentinelArrays ────────────── v1.4.8 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed LIBSVM ────────────────────── v0.8.1 Installed BangBang ──────────────────── v0.4.6 Installed libsvm_jll ────────────────── v3.25.0+0 Installed LIBLINEAR ─────────────────── v0.7.1 Installed Diagonalizations ──────────── v0.2.2 Installed QuadGK ────────────────────── v2.11.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed StringManipulation ────────── v0.4.2 Installed Requires ──────────────────── v1.3.1 Installed glmnet_jll ────────────────── v5.0.0+0 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed SplittablesBase ───────────── v0.1.15 Installed ScikitLearnBase ───────────── v0.5.0 Installed Transducers ───────────────── v0.4.85 Installed CovarianceEstimation ──────── v0.2.13 Installed StatsFuns ─────────────────── v1.5.2 Installed PrettyTables ──────────────── v3.1.2 Installed WoodburyMatrices ──────────── v1.0.0 Installed Tables ────────────────────── v1.12.1 Installed Distributions ─────────────── v0.25.122 Installed Referenceables ────────────── v0.1.3 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed SpecialFunctions ──────────── v2.6.1 Installed GLMNet ────────────────────── v0.7.0 Installed Missings ──────────────────── v1.2.0 Installed Baselet ───────────────────── v0.1.1 Installed DataFrames ────────────────── v1.8.1 Installed Preferences ───────────────── v1.5.0 Installed PooledArrays ──────────────── v1.4.3 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed JLLWrappers ───────────────── v1.7.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.35 Installed Crayons ───────────────────── v4.1.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed PermutationTests ──────────── v0.2.1 Installed liblinear_jll ─────────────── v2.47.0+0 Installed Folds ─────────────────────── v0.2.10 Installed DocStringExtensions ───────── v0.9.5 Installed Accessors ─────────────────── v0.1.42 Installing 6 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact glmnet 154.7 KiB Installed artifact libsvm 124.2 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact liblinear 125.3 KiB Updating `~/.julia/environments/v1.14/Project.toml` [a07f4532] + PosDefManifoldML v0.5.15 Updating `~/.julia/environments/v1.14/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 ⌃ [9cd687f3] + Diagonalizations v0.2.2 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [e189563c] + ExternalDocstrings v0.1.1 [1a297f60] + FillArrays v1.15.0 [41a02a25] + Folds v0.2.10 ⌃ [8d5ece8b] + GLMNet v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [2d691ee1] + LIBLINEAR v0.7.1 [b1bec4e5] + LIBSVM v0.8.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [dd25e4c7] + PermutationTests v0.2.1 [2dfb63ee] + PooledArrays v1.4.3 [f45a3650] + PosDefManifold v0.5.3 [a07f4532] + PosDefManifoldML v0.5.15 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [24d252fe] + ThreadedScans v0.1.0 [28d57a85] + Transducers v0.4.85 [efce3f68] + WoodburyMatrices v1.0.0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [78c6b45d] + glmnet_jll v5.0.0+0 [275f1f90] + liblinear_jll v2.47.0+0 [08558c22] + libsvm_jll v3.25.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 12.06s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4656.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2253.5 ms ✓ Baselet 4097.0 ms ✓ MacroTools 1628.7 ms ✓ InlineStrings 745.5 ms ✓ Reexport 1081.0 ms ✓ Statistics 844.6 ms ✓ DataAPI 1092.8 ms ✓ ConstructionBase 2021.3 ms ✓ IrrationalConstants 895.2 ms ✓ ExternalDocstrings 786.9 ms ✓ DataValueInterfaces 937.9 ms ✓ StaticArraysCore 804.3 ms ✓ StatsAPI 1154.5 ms ✓ Requires 1227.5 ms ✓ OrderedCollections 827.5 ms ✓ InvertedIndices 964.9 ms ✓ InverseFunctions 845.9 ms ✓ CompositionsBase 1130.2 ms ✓ DocStringExtensions 1479.0 ms ✓ InitialValues 794.8 ms ✓ DefineSingletons 2032.6 ms ✓ Combinatorics 1464.0 ms ✓ WoodburyMatrices 868.7 ms ✓ ArgCheck 2099.7 ms ✓ FillArrays 791.6 ms ✓ PtrArrays 728.5 ms ✓ IteratorInterfaceExtensions 819.1 ms ✓ LaTeXStrings 1199.0 ms ✓ SuiteSparse 1792.5 ms ✓ Crayons 2788.0 ms ✓ SentinelArrays 1155.1 ms ✓ Compat 1123.6 ms ✓ Preferences 5360.6 ms ✓ glmnet_jll 1321.1 ms ✓ Statistics → SparseArraysExt  ⭐ Welcome to the  PosDefManifold.jl  package ⭐  [ Info:  Your Machine ` PosDefManifoldML-against-gLKNaA0H` (x86_64-linux-gnu)  runs on kernel Linux with word size 64.  CPU Threads:  1  Base.Threads:  1  BLAS Threads:  1  4456.1 ms ✓ PosDefManifold 942.6 ms ✓ ScikitLearnBase 987.3 ms ✓ Missings 1021.4 ms ✓ PooledArrays 736.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 998.7 ms ✓ Adapt 1659.1 ms ✓ InverseFunctions → InverseFunctionsTestExt 847.7 ms ✓ InverseFunctions → InverseFunctionsDatesExt 795.2 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1469.9 ms ✓ LogExpFunctions 2038.5 ms ✓ ThreadedScans 1584.3 ms ✓ FillArrays → FillArraysSparseArraysExt 934.5 ms ✓ FillArrays → FillArraysStatisticsExt 985.3 ms ✓ AliasTables 749.0 ms ✓ TableTraits 1837.2 ms ✓ PDMats 838.8 ms ✓ Compat → CompatLinearAlgebraExt 1177.5 ms ✓ JLLWrappers 884.4 ms ✓ PrecompileTools 3054.6 ms ✓ Setfield 913.6 ms ✓ Referenceables 893.6 ms ✓ TSVD 1225.5 ms ✓ Adapt → AdaptSparseArraysExt 5082.2 ms ✓ Accessors 803.1 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1764.3 ms ✓ Tables 1421.6 ms ✓ FillArrays → FillArraysPDMatsExt 3888.8 ms ✓ DataStructures 1435.5 ms ✓ liblinear_jll 1391.8 ms ✓ LLVMOpenMP_jll 1430.6 ms ✓ Rmath_jll 1570.9 ms ✓ OpenSpecFun_jll 3154.4 ms ✓ StringManipulation 3611.9 ms ✓ SplittablesBase 2425.2 ms ✓ Accessors → LinearAlgebraExt 1769.7 ms ✓ Accessors → TestExt 1678.6 ms ✓ SortingAlgorithms 2737.8 ms ✓ QuadGK 1482.5 ms ✓ LIBLINEAR 1392.4 ms ✓ libsvm_jll 1463.0 ms ✓ Rmath 4989.2 ms ✓ SpecialFunctions 39600.8 ms ✓ PrettyTables 1661.9 ms ✓ BangBang 9128.3 ms ✓ StatsBase 2429.8 ms ✓ LIBSVM 2448.5 ms ✓ HypergeometricFunctions 91637.2 ms ✓ DataFrames 1121.0 ms ✓ BangBang → BangBangTablesExt 2744.5 ms ✓ MicroCollections 5511.8 ms ✓ CovarianceEstimation 2803.9 ms ✓ StatsFuns 9871.7 ms ✓ BangBang → BangBangDataFramesExt 7478.5 ms ✓ Transducers  ⭐ Welcome to the Diagonalizations.jl package ⭐  [ Info:  Your Machine `PosDefManifoldML-against-gLKNaA0H` (x86_64-linux-gnu)  runs on kernel Linux with word size 64.  CPU Threads: 1  Base.Threads: 1  BLAS Threads: 1  7184.5 ms ✓ Diagonalizations 1391.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 13900.7 ms ✓ Distributions 1859.2 ms ✓ Transducers → TransducersAdaptExt 1828.7 ms ✓ Transducers → TransducersReferenceablesExt 8352.1 ms ✓ Transducers → TransducersDataFramesExt 4205.3 ms ✓ Distributions → DistributionsTestExt ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1467  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1455  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1343  [8] _include_from_serialized  @ ./loading.jl:1300 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2175  [10] _require_search_from_serialized  @ ./loading.jl:2069 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2719  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [13] macro expansion  @ ./loading.jl:2513 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [16] require  @ ./loading.jl:2453 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [27] include_string  @ ./loading.jl:3013 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ Diagonalizations │ ⭐ Welcome to the Diagonalizations.jl package ⭐ │ │ [ Info: │ Your Machine `PosDefManifoldML-against-gLKNaA0H` (x86_64-linux-gnu) │ runs on kernel Linux with word size 64. │ CPU Threads: 1 │ Base.Threads: 1 │ BLAS Threads: 1 └ ┌ PosDefManifold │ ⭐ Welcome to the  PosDefManifold.jl  package ⭐ │ │ [ Info: │ Your Machine ` PosDefManifoldML-against-gLKNaA0H` (x86_64-linux-gnu) │ runs on kernel Linux with word size 64. │ CPU Threads:  1 │ Base.Threads:  1 │ BLAS Threads:  1 │  └ Precompilation completed after 362.45s ################################################################################ # Testing # Testing PosDefManifoldML Status `/tmp/jl_e2j6vB/Project.toml` [a93c6f00] DataFrames v1.8.1 ⌃ [9cd687f3] Diagonalizations v0.2.2 [31c24e10] Distributions v0.25.122 [41a02a25] Folds v0.2.10 ⌃ [8d5ece8b] GLMNet v0.7.0 [b1bec4e5] LIBSVM v0.8.1 [dd25e4c7] PermutationTests v0.2.1 [f45a3650] PosDefManifold v0.5.3 [a07f4532] PosDefManifoldML v0.5.15 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_e2j6vB/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [587fd27a] CovarianceEstimation v0.2.13 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 ⌃ [9cd687f3] Diagonalizations v0.2.2 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e189563c] ExternalDocstrings v0.1.1 [1a297f60] FillArrays v1.15.0 [41a02a25] Folds v0.2.10 ⌃ [8d5ece8b] GLMNet v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [2d691ee1] LIBLINEAR v0.7.1 [b1bec4e5] LIBSVM v0.8.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [dd25e4c7] PermutationTests v0.2.1 [2dfb63ee] PooledArrays v1.4.3 [f45a3650] PosDefManifold v0.5.3 [a07f4532] PosDefManifoldML v0.5.15 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6e75b9c4] ScikitLearnBase v0.5.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [9449cd9e] TSVD v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [24d252fe] ThreadedScans v0.1.0 [28d57a85] Transducers v0.4.85 [efce3f68] WoodburyMatrices v1.0.0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [78c6b45d] glmnet_jll v5.0.0+0 [275f1f90] liblinear_jll v2.47.0+0 [08558c22] libsvm_jll v3.25.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1467  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1455  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1343  [8] _include_from_serialized  @ ./loading.jl:1300 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2175  [10] _require_search_from_serialized  @ ./loading.jl:2069 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2719  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [13] macro expansion  @ ./loading.jl:2513 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [16] require  @ ./loading.jl:2453 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [27] include_string  @ ./loading.jl:3013 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1467  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1455  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1343  [8] _include_from_serialized  @ ./loading.jl:1300 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2175  [10] _require_search_from_serialized  @ ./loading.jl:2069 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2719  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [13] macro expansion  @ ./loading.jl:2513 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [16] require  @ ./loading.jl:2453 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [27] include_string  @ ./loading.jl:3013 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ GLMNet │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: GLMNet Failed to precompile GLMNet [8d5ece8b-de18-5317-b113-243142960cc6] to "/home/pkgeval/.julia/compiled/v1.14/GLMNet/jl_Bq56wz" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/PosDefManifoldML/jKiJp/src/PosDefManifoldML.jl:15 in expression starting at /home/pkgeval/.julia/packages/PosDefManifoldML/jKiJp/test/runtests.jl:1 Testing failed after 56.36s ERROR: LoadError: Package PosDefManifoldML errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 470.67s: package requires a missing binary dependency