Package evaluation to test PhyloNetworks on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T19:03:56.092 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.06s ################################################################################ # Installation # Installing PhyloNetworks... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed StringViews ───────────────── v1.3.5 Installed InlineStrings ─────────────── v1.4.5 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed FilePathsBase ─────────────── v0.9.24 Installed FillArrays ────────────────── v1.15.0 Installed DataStructures ────────────── v0.18.22 Installed CodecZlib ─────────────────── v0.7.8 Installed Compat ────────────────────── v4.18.1 Installed AliasTables ───────────────── v1.1.3 Installed OrderedCollections ────────── v1.8.1 Installed Functors ──────────────────── v0.5.2 Installed TranscodingStreams ────────── v0.11.3 Installed StatsBase ─────────────────── v0.34.8 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.2 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed CEnum ─────────────────────── v0.5.0 Installed SentinelArrays ────────────── v1.4.8 Installed BioSymbols ────────────────── v5.2.0 Installed Twiddle ───────────────────── v1.1.2 Installed StaticArrays ──────────────── v1.9.15 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed QuadGK ────────────────────── v2.11.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed StringManipulation ────────── v0.4.2 Installed LogExpFunctions ───────────── v0.3.29 Installed Parsers ───────────────────── v2.8.3 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed StatsFuns ─────────────────── v1.5.2 Installed PrettyTables ──────────────── v3.1.2 Installed Tables ────────────────────── v1.12.1 Installed Distributions ─────────────── v0.25.122 Installed PtrArrays ─────────────────── v1.3.0 Installed PhyloNetworks ─────────────── v1.2.0 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed WeakRefStrings ────────────── v1.4.2 Installed SpecialFunctions ──────────── v2.6.1 Installed Preferences ───────────────── v1.5.0 Installed DataFrames ────────────────── v1.8.1 Installed FASTX ─────────────────────── v2.1.7 Installed PooledArrays ──────────────── v1.4.3 Installed CSV ───────────────────────── v0.10.15 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.36 Installed Crayons ───────────────────── v4.1.1 Installed Automa ────────────────────── v1.1.0 Installed WorkerUtilities ───────────── v1.6.1 Installed NLopt ─────────────────────── v1.2.1 Installed BioSequences ──────────────── v3.5.0 Installed DocStringExtensions ───────── v0.9.5 Installed NLopt_jll ─────────────────── v2.10.0+0 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact NLopt 322.7 KiB Updating `~/.julia/environments/v1.14/Project.toml` [33ad39ac] + PhyloNetworks v1.2.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.5.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [c2308a5c] + FASTX v2.1.7 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [76087f3c] + NLopt v1.2.1 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [33ad39ac] + PhyloNetworks v1.2.0 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [7200193e] + Twiddle v1.1.2 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 9.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4526.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1688.1 ms ✓ InlineStrings 783.0 ms ✓ Reexport 1109.1 ms ✓ Statistics 849.3 ms ✓ DataAPI 1146.0 ms ✓ ConstructionBase 2087.5 ms ✓ IrrationalConstants 769.4 ms ✓ DataValueInterfaces 969.3 ms ✓ StaticArraysCore 816.2 ms ✓ StatsAPI 1298.6 ms ✓ OrderedCollections 867.3 ms ✓ InvertedIndices 834.3 ms ✓ Twiddle 1185.4 ms ✓ DocStringExtensions 860.1 ms ✓ CEnum 2119.2 ms ✓ Combinatorics 1086.2 ms ✓ StringViews 1248.5 ms ✓ WorkerUtilities 2378.7 ms ✓ FillArrays 802.0 ms ✓ PtrArrays 1343.9 ms ✓ TranscodingStreams 742.9 ms ✓ IteratorInterfaceExtensions 834.6 ms ✓ LaTeXStrings 1226.9 ms ✓ SuiteSparse 1836.7 ms ✓ Crayons 2782.5 ms ✓ SentinelArrays 1131.8 ms ✓ Compat 1133.3 ms ✓ Preferences 1342.4 ms ✓ Statistics → SparseArraysExt 935.7 ms ✓ Missings 1000.1 ms ✓ PooledArrays 774.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1364.9 ms ✓ LogExpFunctions 1515.3 ms ✓ FillArrays → FillArraysSparseArraysExt 1035.4 ms ✓ FillArrays → FillArraysStatisticsExt 1176.3 ms ✓ AliasTables 1257.1 ms ✓ BioGenerics 1119.7 ms ✓ CodecZlib 889.6 ms ✓ TableTraits 1796.6 ms ✓ PDMats 815.6 ms ✓ Compat → CompatLinearAlgebraExt 1178.7 ms ✓ JLLWrappers 879.7 ms ✓ PrecompileTools 1718.5 ms ✓ Tables 1407.9 ms ✓ FillArrays → FillArraysPDMatsExt 1994.2 ms ✓ FilePathsBase 3853.0 ms ✓ DataStructures 1232.7 ms ✓ Functors 1392.5 ms ✓ NLopt_jll 1356.4 ms ✓ Rmath_jll 1381.7 ms ✓ OpenSpecFun_jll 2513.4 ms ✓ BioSymbols 13254.0 ms ✓ StaticArrays 3113.2 ms ✓ StringManipulation 16528.4 ms ✓ SIMD 16958.8 ms ✓ Parsers 951.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1519.7 ms ✓ SortingAlgorithms 3246.8 ms ✓ QuadGK 2018.2 ms ✓ NLopt 1518.1 ms ✓ Rmath 4909.4 ms ✓ SpecialFunctions 9446.3 ms ✓ BioSequences 1420.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 1418.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 39240.7 ms ✓ PrettyTables 21906.6 ms ✓ Automa 936.6 ms ✓ InlineStrings → ParsersExt 5000.8 ms ✓ StatsBase 2501.5 ms ✓ HypergeometricFunctions 90246.8 ms ✓ DataFrames 22981.2 ms ✓ FASTX 2517.3 ms ✓ WeakRefStrings 1853.9 ms ✓ PDMats → StatsBaseExt 2765.4 ms ✓ StatsFuns 2379.3 ms ✓ FASTX → BioSequencesExt 29707.4 ms ✓ CSV 9722.9 ms ✓ Distributions 21089.4 ms ✓ PhyloNetworks 78 dependencies successfully precompiled in 397 seconds. 19 already precompiled. Precompilation completed after 410.94s ################################################################################ # Testing # Testing PhyloNetworks Status `/tmp/jl_5LwASq/Project.toml` [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [336ed68f] CSV v0.10.15 [861a8166] Combinatorics v1.0.3 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [31c24e10] Distributions v0.25.122 [c2308a5c] FASTX v2.1.7 [d9f16b24] Functors v0.5.2 [76087f3c] NLopt v1.2.1 [33ad39ac] PhyloNetworks v1.2.0 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.15 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.8 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5LwASq/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [67c07d97] Automa v1.1.0 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.5.0 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.18.1 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [c2308a5c] FASTX v2.1.7 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [d9f16b24] Functors v0.5.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [76087f3c] NLopt v1.2.1 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [33ad39ac] PhyloNetworks v1.2.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [fdea26ae] SIMD v3.7.2 [91c51154] SentinelArrays v1.4.8 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [7200193e] Twiddle v1.1.2 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: starting test_deprecated.jl Test Summary: | Pass Total Time deprecated | 1 1 1.7s PASSED: test_deprecated.jl [ Info: starting test_quartet.jl FAILED: test_quartet.jl ┌ Error: Error in test_quartet.jl │ exception = (nothing, Union{Ptr{Nothing}, Base.InterpreterIP}[Ptr{Nothing}(0x00007d4ea58f3d8f), Ptr{Nothing}(0x00007d4ea587bc4a), Ptr{Nothing}(0x00007d4ea587bd1e), Ptr{Nothing}(0x00007d4ea58730e3), Ptr{Nothing}(0x00007d4ea585972c), Ptr{Nothing}(0x00007d4ea587f50c), Ptr{Nothing}(0x00007d4ea587ed8d), Ptr{Nothing}(0x00007d4ea58800ad), Ptr{Nothing}(0x00007d4ea5881d20), Base.InterpreterIP in top-level CodeInfo for Main at statement 12 … Ptr{Nothing}(0x00007d4e932ca943), Ptr{Nothing}(0x00007d4e936a0041), Ptr{Nothing}(0x00007d4e930e8d13), Ptr{Nothing}(0x00007d4ea585972c), Ptr{Nothing}(0x00007d4ea58d5c7d), Ptr{Nothing}(0x00007d4ea58d699e), Ptr{Nothing}(0x0000000000401088), Ptr{Nothing}(0x00007d4ea6449249), Ptr{Nothing}(0x00007d4ea6449304), Ptr{Nothing}(0x00000000004010b8)]) └ @ Main ~/.julia/packages/PhyloNetworks/7zhDI/test/runtests.jl:45 [ Info: starting test_auxiliary.jl Test Summary: | Pass Total Time auxiliary | 85 85 37.9s PASSED: test_auxiliary.jl [ Info: starting test_generatetopology.jl Test Summary: | Pass Total Time deterministic topologies | 5 5 0.5s PASSED: test_generatetopology.jl [ Info: starting test_addHybrid.jl Test Summary: | Pass Total Time addhybridedge! top function | 11 11 4.8s Test Summary: | Pass Total Time addhybridedge! helper function | 14 14 0.0s Test Summary: | Pass Total Time edge checking functions | 11 11 0.0s PASSED: test_addHybrid.jl [ Info: starting test_graph_components.jl Test Summary: | Pass Total Time Tarjan's biconnected components | 38 38 6.5s Test Summary: | Pass Total Time tree component | 22 22 4.8s PASSED: test_graph_components.jl [ Info: starting test_manipulateNet.jl Test Summary: | Pass Total Time manipulateNet | 99 99 21.4s PASSED: test_manipulateNet.jl [ Info: starting test_compareNetworks.jl Test Summary: | Pass Total Time test sets: compareNetworks | 114 114 7.3s PASSED: test_compareNetworks.jl [ Info: starting test_bootstrap.jl using seed 80907 for bootstrap trees Test Summary: | Pass Total Time testing hybridclades_support | 24 24 57.6s PASSED: test_bootstrap.jl [ Info: starting test_moves_semidirected.jl Test Summary: | Pass Total Time unconstrained NNI moves | 190 190 5.8s Test Summary: | Pass Total Time constrained NNI moves | 53 53 50.9s Test Summary: | Pass Total Time test fliphybrid! | 33 33 0.8s Test Summary: | Pass Total Time test fliphybrid! randomly choose node function | 5 5 0.1s PASSED: test_moves_semidirected.jl [ Info: starting test_parsimony.jl Test Summary: | Pass Total Time Testing parsimony score & reconstruction | 28 28 39.0s Test Summary: | Broken Total Time data from CSV, parsimony search | 1 1 1.8s PASSED: test_parsimony.jl [ Info: starting test_recursion_matrices.jl Test Summary: | Pass Total Time traits: shared path, vcv, descendence matrix | 9 9 14.0s PASSED: test_recursion_matrices.jl [ Info: starting test_calibratePairwise.jl Test Summary: | Pass Total Time calibrate with distances: 3-cycle, non-identifiable example | 8 8 12.8s Test Summary: | Pass Total Time calibrate with distances: 5-cycle example (when unrooted) | 8 8 2.0s Test Summary: | Pass Total Time starting BL by fitting data-estimated distances | 1 1 4.0s PASSED: test_calibratePairwise.jl [ Info: starting test_expectedfstat.jl Test Summary: | Pass Total Time expected f2, f3, f4 | 7 7 9.2s PASSED: test_expectedfstat.jl [ Info: starting test_relaxed_reading.jl Test Summary: | Pass Total Time test: newick parsing | 37 37 3.3s PASSED: test_relaxed_reading.jl [ Info: starting test_isMajor.jl Test Summary: | Pass Total Time readnewick Hybrid Node ismajor Tests | 11 11 0.3s Test Summary: | Pass Total Time parsing extended newick | 6 6 0.1s PASSED: test_isMajor.jl [ Info: starting test_interop.jl Test Summary: | Pass Total Time testing interoperability, matrix-based net | 21 21 2.9s PASSED: test_interop.jl [ Info: starting test_nj.jl Test Summary: | Pass Total Time neighbour joining tree | 6 6 7.6s PASSED: test_nj.jl [ Info: starting test_murepresentation.jl Test Summary: | Pass Total Time μ distances | 61 61 14.5s PASSED: test_murepresentation.jl ------------------------------------- ERROR: LoadError: "Tests failed" Stacktrace: [1] top-level scope @ ~/.julia/packages/PhyloNetworks/7zhDI/test/runtests.jl:52 [2] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [3] top-level scope @ none:6 [4] eval(m::Module, e::Any) @ Core ./boot.jl:489 [5] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [6] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/7zhDI/test/runtests.jl:50 Testing failed after 394.03s ERROR: LoadError: Package PhyloNetworks errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 849.54s: package tests unexpectedly errored