Package evaluation to test PhyloClustering on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-28T00:06:01.449


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.88s


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# Installation
#

Installing PhyloClustering...
   Resolving package versions...
   Installed libaom_jll ────────────────── v3.13.1+0
   Installed Libuuid_jll ───────────────── v2.41.2+0
   Installed Formatting ────────────────── v0.4.3
   Installed libass_jll ────────────────── v0.17.4+0
   Installed ImageIO ───────────────────── v0.6.9
   Installed MosaicViews ───────────────── v0.3.4
   Installed PolygonOps ────────────────── v0.1.2
   Installed MultivariateStats ─────────── v0.10.3
   Installed HarfBuzz_jll ──────────────── v8.5.1+0
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed InlineStrings ─────────────── v1.4.5
   Installed MKL_jll ───────────────────── v2025.2.0+0
   Installed Libtiff_jll ───────────────── v4.7.2+0
   Installed Extents ───────────────────── v0.1.6
   Installed Cairo_jll ─────────────────── v1.18.5+0
   Installed NearestNeighbors ──────────── v0.4.24
   Installed OrderedCollections ────────── v1.8.1
   Installed Functors ──────────────────── v0.4.12
   Installed Optim ─────────────────────── v1.13.3
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed UnsafeArrays ──────────────── v1.0.8
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed Fontconfig_jll ────────────── v2.17.1+0
   Installed SentinelArrays ────────────── v1.4.8
   Installed Distances ─────────────────── v0.10.12
   Installed NaNMath ───────────────────── v1.1.3
   Installed AbstractLattices ──────────── v0.3.1
   Installed QuadGK ────────────────────── v2.11.2
   Installed FileIO ────────────────────── v1.17.1
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed Graphics ──────────────────── v1.1.3
   Installed Opus_jll ──────────────────── v1.5.2+0
   Installed ScopedValues ──────────────── v1.5.0
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed SimplePolynomials ─────────── v0.2.18
   Installed Tables ────────────────────── v1.12.1
   Installed EnumX ─────────────────────── v1.0.5
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed Arpack ────────────────────── v0.5.4
   Installed Ogg_jll ───────────────────── v1.3.6+0
   Installed NLSolversBase ─────────────── v7.10.0
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed Reexport ──────────────────── v1.2.2
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed Missings ──────────────────── v1.2.0
   Installed TableTraits ───────────────── v1.0.1
   Installed Preferences ───────────────── v1.5.0
   Installed Polynomials ───────────────── v4.0.21
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Imath_jll ─────────────────── v3.1.11+0
   Installed MappedArrays ──────────────── v0.4.2
   Installed Crayons ───────────────────── v4.1.1
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed Grisu ─────────────────────── v1.0.2
   Installed RangeArrays ───────────────── v0.3.2
   Installed Format ────────────────────── v1.3.7
   Installed CRlibm ────────────────────── v1.0.2
   Installed ADTypes ───────────────────── v1.19.0
   Installed Inflate ───────────────────── v0.1.5
   Installed ColorBrewer ───────────────── v0.4.2
   Installed DiffResults ───────────────── v1.1.0
   Installed DataStructures ────────────── v0.18.22
   Installed MacroTools ────────────────── v0.5.16
   Installed FillArrays ────────────────── v1.15.0
   Installed AbstractTrees ─────────────── v0.4.5
   Installed ParallelKMeans ────────────── v1.1.0
   Installed MathTeXEngine ─────────────── v0.5.7
   Installed OpenEXR_jll ───────────────── v3.2.4+0
   Installed Packing ───────────────────── v0.5.1
   Installed LazyModules ───────────────── v0.3.1
   Installed DelimitedFiles ────────────── v1.9.1
   Installed oneTBB_jll ────────────────── v2022.0.0+1
   Installed MakieCore ─────────────────── v0.7.3
   Installed Cairo ─────────────────────── v1.1.1
   Installed StatsBase ─────────────────── v0.33.21
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed UnicodeFun ────────────────── v0.4.1
   Installed CodecZlib ─────────────────── v0.7.8
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed Observables ───────────────── v0.5.5
   Installed ArrayInterface ────────────── v7.22.0
   Installed CairoMakie ────────────────── v0.11.9
   Installed IntelOpenMP_jll ───────────── v2025.2.0+0
   Installed CEnum ─────────────────────── v0.5.0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed Libffi_jll ────────────────── v3.4.7+0
   Installed CommonSubexpressions ──────── v0.3.1
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed Expat_jll ─────────────────── v2.7.3+0
   Installed StructUtils ───────────────── v2.6.0
   Installed IrrationalConstants ───────── v0.2.6
   Installed Clustering ────────────────── v0.15.8
   Installed IntegerMathUtils ──────────── v0.1.3
   Installed isoband_jll ───────────────── v0.2.3+0
   Installed libpng_jll ────────────────── v1.6.51+0
   Installed Contour ───────────────────── v0.6.3
   Installed RoundingEmulator ──────────── v0.2.1
   Installed SimpleTraits ──────────────── v0.9.5
   Installed StableRNGs ────────────────── v1.0.4
   Installed ImageMetadata ─────────────── v0.9.10
   Installed ColorVectorSpace ──────────── v0.10.0
   Installed libsixel_jll ──────────────── v1.10.5+0
   Installed libfdk_aac_jll ────────────── v2.0.4+0
   Installed Interpolations ────────────── v0.16.2
   Installed Scratch ───────────────────── v1.3.0
   Installed PikaParser ────────────────── v0.6.1
   Installed libwebp_jll ───────────────── v1.6.0+0
   Installed FFMPEG_jll ────────────────── v8.0.0+0
   Installed Setfield ──────────────────── v1.1.2
   Installed ShaderAbstractions ────────── v0.4.1
   Installed PooledArrays ──────────────── v1.4.3
   Installed CRlibm_jll ────────────────── v1.0.1+0
   Installed FASTX ─────────────────────── v2.1.7
   Installed PDMats ────────────────────── v0.11.35
   Installed WeakKeyIdDicts ────────────── v0.1.0
   Installed ImageCore ─────────────────── v0.10.5
   Installed AxisArrays ────────────────── v0.4.8
   Installed WorkerUtilities ───────────── v1.6.1
   Installed DocStringExtensions ───────── v0.9.5
   Installed PNGFiles ──────────────────── v0.4.4
   Installed JpegTurbo ─────────────────── v0.1.6
   Installed BioSequences ──────────────── v3.5.0
   Installed StableHashTraits ──────────── v1.3.4
   Installed ForwardDiff ───────────────── v1.3.0
   Installed DifferentiationInterface ──── v0.7.12
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed FreeType ──────────────────── v4.1.1
   Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0
   Installed LightXML ──────────────────── v0.9.3
   Installed PkgVersion ────────────────── v0.3.3
   Installed RelocatableFolders ────────── v1.0.1
   Installed Multisets ─────────────────── v0.4.5
   Installed StackViews ────────────────── v0.1.2
   Installed StringViews ───────────────── v1.3.5
   Installed StatsModels ───────────────── v0.7.7
   Installed KernelDensity ─────────────── v0.6.10
   Installed AliasTables ───────────────── v1.1.3
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed HashArrayMappedTries ──────── v0.2.0
   Installed Combinatorics ─────────────── v1.0.3
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed SIMD ──────────────────────── v3.7.2
   Installed RecipesBase ───────────────── v1.3.4
   Installed DataAPI ───────────────────── v1.16.0
   Installed GaussianMixtures ──────────── v0.3.13
   Installed InvertedIndices ───────────── v1.3.1
   Installed Netpbm ────────────────────── v1.1.1
   Installed Colors ────────────────────── v0.12.11
   Installed Twiddle ───────────────────── v1.1.2
   Installed ImageAxes ─────────────────── v0.6.12
   Installed StaticArraysCore ──────────── v1.4.4
   Installed StaticArrays ──────────────── v1.9.15
   Installed Libglvnd_jll ──────────────── v1.7.1+1
   Installed AbstractFFTs ──────────────── v1.5.0
   Installed ColorTypes ────────────────── v0.11.5
   Installed QOI ───────────────────────── v1.0.2
   Installed Mods ──────────────────────── v2.2.6
   Installed AxisAlgorithms ────────────── v1.1.0
   Installed Requires ──────────────────── v1.3.1
   Installed StringManipulation ────────── v0.4.2
   Installed Glib_jll ──────────────────── v2.86.0+0
   Installed SimplePartitions ──────────── v0.3.3
   Installed BaseDirs ──────────────────── v1.3.2
   Installed LogExpFunctions ───────────── v0.3.29
   Installed DiffRules ─────────────────── v1.15.1
   Installed CSV ───────────────────────── v0.10.15
   Installed FreeTypeAbstraction ───────── v0.10.8
   Installed JSON ──────────────────────── v1.3.0
   Installed PrettyTables ──────────────── v3.1.2
   Installed Parsers ───────────────────── v2.8.3
   Installed Arpack_jll ────────────────── v3.5.1+1
   Installed Rmath ─────────────────────── v0.9.0
   Installed FiniteDiff ────────────────── v2.29.0
   Installed BioGenerics ───────────────── v0.1.5
   Installed Distributions ─────────────── v0.25.122
   Installed PhyloNetworks ─────────────── v0.16.4
   Installed FilePaths ─────────────────── v0.8.3
   Installed GeoFormatTypes ────────────── v0.4.5
   Installed StatsFuns ─────────────────── v1.5.2
   Installed PhyloClustering ───────────── v0.2.0
   Installed GridLayoutBase ────────────── v0.10.2
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed OpenEXR ───────────────────── v0.3.3
   Installed ColorSchemes ──────────────── v3.31.0
   Installed WeakRefStrings ────────────── v1.4.2
   Installed SignedDistanceFields ──────── v0.4.0
   Installed JLLWrappers ───────────────── v1.7.1
   Installed DataFrames ────────────────── v1.8.1
   Installed XZ_jll ────────────────────── v5.8.1+0
   Installed x265_jll ──────────────────── v4.1.0+0
   Installed Primes ────────────────────── v0.5.7
   Installed ExactPredicates ───────────── v2.2.9
   Installed GeometryBasics ────────────── v0.4.11
   Installed StructTypes ───────────────── v1.11.0
   Installed Pango_jll ─────────────────── v1.57.0+0
   Installed NLopt ─────────────────────── v1.2.1
   Installed StatisticalTraits ─────────── v3.5.0
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed IterTools ─────────────────── v1.10.0
   Installed FilePathsBase ─────────────── v0.9.24
   Installed TiffImages ────────────────── v0.11.6
   Installed JpegTurbo_jll ─────────────── v3.1.3+0
   Installed PaddedViews ───────────────── v0.5.12
   Installed GLM ───────────────────────── v1.9.0
   Installed Adapt ─────────────────────── v4.4.0
   Installed JLD2 ──────────────────────── v0.5.15
   Installed ConstructionBase ──────────── v1.6.0
   Installed HypergeometricFunctions ───── v0.3.28
   Installed TriplotBase ───────────────── v0.1.0
   Installed Libmount_jll ──────────────── v2.41.2+0
   Installed TranscodingStreams ────────── v0.11.3
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed Compat ────────────────────── v4.18.1
   Installed RingLists ─────────────────── v0.2.9
   Installed Sixel ─────────────────────── v0.1.5
   Installed LinearAlgebraX ────────────── v0.2.10
   Installed PlotUtils ─────────────────── v1.4.4
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed PositiveFactorizations ────── v0.2.4
   Installed TensorCore ────────────────── v0.1.1
   Installed DelaunayTriangulation ─────── v0.8.12
   Installed Statistics ────────────────── v1.11.1
   Installed PrecompileTools ───────────── v1.3.3
   Installed ImageBase ─────────────────── v0.1.7
   Installed StatsAPI ──────────────────── v1.7.1
   Installed StructArrays ──────────────── v0.6.21
   Installed ProgressMeter ─────────────── v1.11.0
   Installed OffsetArrays ──────────────── v1.17.0
   Installed WebP ──────────────────────── v0.1.3
   Installed GettextRuntime_jll ────────── v0.22.4+0
   Installed Ratios ────────────────────── v0.4.5
   Installed TupleTools ────────────────── v1.6.0
   Installed BioSymbols ────────────────── v5.2.0
   Installed ChainRulesCore ────────────── v1.26.0
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed LAME_jll ──────────────────── v3.100.3+0
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed libvorbis_jll ─────────────── v1.3.8+0
   Installed Isoband ───────────────────── v0.1.1
   Installed Animations ────────────────── v0.4.2
   Installed ScikitLearnBase ───────────── v0.5.0
   Installed XML2_jll ──────────────────── v2.15.1+0
   Installed PtrArrays ─────────────────── v1.3.0
   Installed IntervalArithmetic ────────── v1.0.2
   Installed IntervalSets ──────────────── v0.7.13
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed SpecialFunctions ──────────── v2.6.1
   Installed ScientificTypesBase ───────── v3.0.0
   Installed Showoff ───────────────────── v1.0.3
   Installed FFTW ──────────────────────── v1.10.0
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed LineSearches ──────────────── v7.5.1
   Installed Permutations ──────────────── v0.4.23
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed IndirectArrays ────────────── v1.0.0
   Installed Automa ────────────────────── v1.1.0
   Installed GeoInterface ──────────────── v1.4.1
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed SimpleRandom ──────────────── v0.3.2
   Installed MLJModelInterface ─────────── v1.12.0
   Installed SimpleGraphs ──────────────── v0.8.7
   Installed Makie ─────────────────────── v0.20.8
  Installing 56 artifacts
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact OpenSpecFun             194.9 KiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact Expat                   283.3 KiB
   Installed artifact libpng                  328.9 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact libass                  427.8 KiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact Libtiff                 2.3 MiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact Pango                   2.0 MiB
   Installed artifact x264                    2.1 MiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact Imath                   182.8 KiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact x265                    1.4 MiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact Bzip2                   503.5 KiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact NLopt                   322.7 KiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact isoband                 25.7 KiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact JpegTurbo               1.4 MiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact Fontconfig              984.8 KiB
   Installed artifact Libuuid                 3.7 MiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact Xorg_libX11             13.9 MiB
   Installed artifact GettextRuntime          543.0 KiB
   Installed artifact Arpack                  147.2 KiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact Libmount                6.5 MiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact OpenEXR                 1.9 MiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact Libffi                  44.2 KiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact Opus                    925.5 KiB
   Installed artifact Glib                    7.7 MiB
   Installed artifact Ogg                     250.3 KiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact XML2                    2.2 MiB
   Installed artifact libaom                  6.4 MiB
   Installed artifact FFMPEG                  11.7 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [2e4ec7c6] + PhyloClustering v0.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.19.0
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.3.1
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.22.0
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
  [18cc8868] + BaseDirs v1.3.2
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.0
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
⌅ [13f3f980] + CairoMakie v0.11.9
  [d360d2e6] + ChainRulesCore v1.26.0
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [a2cac450] + ColorBrewer v0.4.2
  [35d6a980] + ColorSchemes v3.31.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌃ [c3611d14] + ColorVectorSpace v0.10.0
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.8.12
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.12
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.9
  [411431e0] + Extents v0.1.6
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
⌅ [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [6a86dc24] + FiniteDiff v2.29.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.3.0
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [cc18c42c] + GaussianMixtures v0.3.13
  [68eda718] + GeoFormatTypes v0.4.5
⌃ [cf35fbd7] + GeoInterface v1.4.1
⌅ [5c1252a2] + GeometryBasics v0.4.11
  [a2bd30eb] + Graphics v1.1.3
⌅ [3955a311] + GridLayoutBase v0.10.2
  [42e2da0e] + Grisu v1.0.2
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [18e54dd8] + IntegerMathUtils v0.1.3
  [a98d9a8b] + Interpolations v0.16.2
  [d1acc4aa] + IntervalArithmetic v1.0.2
  [8197267c] + IntervalSets v0.7.13
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.5.15
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.10
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.3
  [d3d80556] + LineSearches v7.5.1
  [9b3f67b0] + LinearAlgebraX v0.2.10
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.12.0
  [1914dd2f] + MacroTools v0.5.16
⌅ [ee78f7c6] + Makie v0.20.8
⌅ [20f20a25] + MakieCore v0.7.3
  [dbb5928d] + MappedArrays v0.4.2
⌅ [0a4f8689] + MathTeXEngine v0.5.7
  [e1d29d7a] + Missings v1.2.0
  [7475f97c] + Mods v2.2.6
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.5
  [6f286f6a] + MultivariateStats v0.10.3
  [d41bc354] + NLSolversBase v7.10.0
  [76087f3c] + NLopt v1.2.1
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.24
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [429524aa] + Optim v1.13.3
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [42b8e9d4] + ParallelKMeans v1.1.0
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [2e4ec7c6] + PhyloClustering v0.2.0
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.4
  [647866c9] + PolygonOps v0.1.2
⌃ [f27b6e38] + Polynomials v4.0.21
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.2
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.2
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [286e9d63] + RingLists v0.2.9
  [79098fc4] + Rmath v0.9.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.2
  [30f210dd] + ScientificTypesBase v3.0.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [7e506255] + ScopedValues v1.5.0
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
⌅ [65257c39] + ShaderAbstractions v0.4.1
  [1277b4bf] + ShiftedArrays v2.0.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.7
  [ec83eff0] + SimplePartitions v0.3.3
  [cc47b68c] + SimplePolynomials v0.2.18
  [a6525b86] + SimpleRandom v0.3.2
  [699a6c99] + SimpleTraits v0.9.5
  [45858cf5] + Sixel v0.1.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
⌅ [c5dd0088] + StableHashTraits v1.3.4
  [860ef19b] + StableRNGs v1.0.4
  [cae243ae] + StackViews v0.1.2
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
  [3eaba693] + StatsModels v0.7.7
  [892a3eda] + StringManipulation v0.4.2
  [354b36f9] + StringViews v1.3.5
⌅ [09ab397b] + StructArrays v0.6.21
  [856f2bd8] + StructTypes v1.11.0
  [ec057cc2] + StructUtils v2.6.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.6
  [3bb67fe8] + TranscodingStreams v0.11.3
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.6.0
  [7200193e] + Twiddle v1.1.2
  [1cfade01] + UnicodeFun v0.4.1
  [c4a57d5a] + UnsafeArrays v1.0.8
  [ecbed89c] + WeakKeyIdDicts v0.1.0
  [ea10d353] + WeakRefStrings v1.4.2
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.1+1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [83423d85] + Cairo_jll v1.18.5+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.7.3+0
  [b22a6f82] + FFMPEG_jll v8.0.0+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [59f7168a] + Giflib_jll v5.2.3+0
  [7746bdde] + Glib_jll v2.86.0+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.3+0
  [c1c5ebd0] + LAME_jll v3.100.3+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [856f044c] + MKL_jll v2025.2.0+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.6+0
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.5.2+0
  [36c8627f] + Pango_jll v1.57.0+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.13.1+0
  [0ac62f75] + libass_jll v0.17.4+0
  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [b53b4c65] + libpng_jll v1.6.51+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.8+0
  [c5f90fcd] + libwebp_jll v1.6.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [8bf52ea8] + CRC32c v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 29.33s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
   4615.5 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   4253.7 ms  ✓ MacroTools
   1755.6 ms  ✓ InlineStrings
    817.7 ms  ✓ Reexport
   1008.1 ms  ✓ MappedArrays
    941.7 ms  ✓ TensorCore
   1133.4 ms  ✓ ConstructionBase
   1135.0 ms  ✓ Mods
   2244.3 ms  ✓ IrrationalConstants
    835.0 ms  ✓ DataValueInterfaces
    856.1 ms  ✓ StatsAPI
   2409.4 ms  ✓ Format
   1121.4 ms  ✓ Observables
    870.4 ms  ✓ Twiddle
    951.2 ms  ✓ RoundingEmulator
   1619.8 ms  ✓ PolygonOps
   1632.3 ms  ✓ IterTools
   1407.0 ms  ✓ IntervalSets
   1395.7 ms  ✓ CEnum
   1605.8 ms  ✓ Functors
   2077.0 ms  ✓ Combinatorics
   1148.1 ms  ✓ StringViews
   1035.4 ms  ✓ RingLists
   1017.1 ms  ✓ Inflate
    903.6 ms  ✓ Contour
   1023.7 ms  ✓ TupleTools
   1300.9 ms  ✓ TranscodingStreams
    911.9 ms  ✓ LaTeXStrings
   1124.8 ms  ✓ Statistics
    969.8 ms  ✓ StaticArraysCore
    948.9 ms  ✓ WeakKeyIdDicts
    934.2 ms  ✓ StableRNGs
    773.7 ms  ✓ AbstractLattices
    902.6 ms  ✓ GeoFormatTypes
    841.1 ms  ✓ PtrArrays
   1222.9 ms  ✓ Grisu
    980.0 ms  ✓ PositiveFactorizations
    905.7 ms  ✓ DataAPI
    901.4 ms  ✓ InvertedIndices
   1251.4 ms  ✓ Multisets
    973.0 ms  ✓ LazyModules
    861.9 ms  ✓ ShiftedArrays
   1104.0 ms  ✓ AbstractTrees
   1043.0 ms  ✓ AbstractFFTs
    861.5 ms  ✓ EnumX
    965.2 ms  ✓ WorkerUtilities
   2029.3 ms  ✓ FillArrays
    866.2 ms  ✓ IntegerMathUtils
    938.6 ms  ✓ ScientificTypesBase
    954.4 ms  ✓ TriplotBase
    859.7 ms  ✓ IndirectArrays
   1009.5 ms  ✓ Extents
    876.2 ms  ✓ RangeArrays
   1211.4 ms  ✓ OrderedCollections
    917.2 ms  ✓ HashArrayMappedTries
   1365.0 ms  ✓ ADTypes
   1067.7 ms  ✓ DocStringExtensions
   1099.1 ms  ✓ UnsafeArrays
   4296.3 ms  ✓ BaseDirs
   1518.1 ms  ✓ OffsetArrays
   1027.6 ms  ✓ IteratorInterfaceExtensions
   2411.3 ms  ✓ Crayons
   1216.4 ms  ✓ DelimitedFiles
┌ Warning: DEPRECATION NOTICE
│ 
│ Formatting.jl has been unmaintained for a while, with some serious
│ correctness bugs compromising the original purpose of the package. As a result,
│ it has been deprecated - consider using an alternative, such as
│ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│ 
│ If you are not using Formatting.jl as a direct dependency, please consider
│ opening an issue on any packages you are using that do use it as a dependency.
│ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│ package originally brings it in as a dependency.
└ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
   1298.5 ms  ✓ Formatting
   1068.9 ms  ✓ NaNMath
   1184.4 ms  ✓ Requires
   1230.9 ms  ✓ SuiteSparse
   1453.5 ms  ✓ WoodburyMatrices
    954.5 ms  ✓ Scratch
   2566.0 ms  ✓ SentinelArrays
   1467.9 ms  ✓ StructTypes
   1425.6 ms  ✓ StructUtils
   1662.8 ms  ✓ ProgressMeter
   3155.7 ms  ✓ UnicodeFun
   1196.1 ms  ✓ Compat
   1156.3 ms  ✓ Preferences
   4495.2 ms  ✓ PkgVersion
   1728.3 ms  ✓ CommonSubexpressions
   3389.9 ms  ✓ SimpleTraits
    886.7 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
   2868.9 ms  ✓ MakieCore
    747.5 ms  ✓ IntervalSets → IntervalSetsRandomExt
    765.4 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
   1079.7 ms  ✓ Permutations
    908.5 ms  ✓ BioGenerics
   1056.1 ms  ✓ CodecZlib
    797.1 ms  ✓ SignedDistanceFields
   1300.0 ms  ✓ Statistics → SparseArraysExt
   3544.6 ms  ✓ FixedPointNumbers
    938.0 ms  ✓ ScikitLearnBase
   1408.8 ms  ✓ Distances
    752.4 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
    849.0 ms  ✓ DiffResults
    934.0 ms  ✓ AliasTables
    855.0 ms  ✓ Showoff
    941.7 ms  ✓ Missings
    967.0 ms  ✓ PooledArrays
   3711.9 ms  ✓ AbstractFFTs → AbstractFFTsTestExt
   1396.3 ms  ✓ FillArrays → FillArraysSparseArraysExt
    930.9 ms  ✓ FillArrays → FillArraysStatisticsExt
   1096.9 ms  ✓ Primes
    864.9 ms  ✓ StatisticalTraits
   1845.7 ms  ✓ GeoInterface
    875.2 ms  ✓ ScopedValues
    766.8 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   1819.2 ms  ✓ DifferentiationInterface
   1350.1 ms  ✓ LogExpFunctions
   1470.3 ms  ✓ PikaParser
    902.1 ms  ✓ PaddedViews
    846.5 ms  ✓ StackViews
    764.9 ms  ✓ TableTraits
    834.2 ms  ✓ Ratios
    916.9 ms  ✓ Adapt
   8311.6 ms  ✓ FileIO
   1672.4 ms  ✓ PDMats
   1306.6 ms  ✓ AxisAlgorithms
   1062.9 ms  ✓ RelocatableFolders
    850.2 ms  ✓ Compat → CompatLinearAlgebraExt
    918.5 ms  ✓ PrecompileTools
   1127.5 ms  ✓ JLLWrappers
   2678.3 ms  ✓ Setfield
   1447.9 ms  ✓ AxisArrays
   4174.7 ms  ✓ ColorTypes
   1278.4 ms  ✓ Distances → DistancesSparseArraysExt
   2813.9 ms  ✓ MLJModelInterface
   1303.2 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
    969.2 ms  ✓ MosaicViews
   1780.5 ms  ✓ Tables
    903.4 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   1179.8 ms  ✓ ArrayInterface
   1325.8 ms  ✓ Adapt → AdaptSparseArraysExt
    836.5 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   1432.6 ms  ✓ FillArrays → FillArraysPDMatsExt
   2601.1 ms  ✓ ChainRulesCore
   2006.2 ms  ✓ FilePathsBase
   3738.8 ms  ✓ DataStructures
   2520.5 ms  ✓ BioSymbols
   3122.6 ms  ✓ StringManipulation
  15145.4 ms  ✓ SIMD
  11880.5 ms  ✓ StaticArrays
   2662.5 ms  ✓ RecipesBase
  15024.3 ms  ✓ Parsers
  44998.7 ms  ✓ JLD2
   1758.0 ms  ✓ Libffi_jll
   1429.8 ms  ✓ LZO_jll
   1471.8 ms  ✓ EarCut_jll
   1424.2 ms  ✓ Bzip2_jll
   1409.7 ms  ✓ isoband_jll
   1424.3 ms  ✓ OpenBLASConsistentFPCSR_jll
   1478.8 ms  ✓ XZ_jll
   1717.9 ms  ✓ NLopt_jll
   1669.5 ms  ✓ Rmath_jll
   1534.2 ms  ✓ OpenSpecFun_jll
   1253.8 ms  ✓ Xorg_xtrans_jll
   1282.6 ms  ✓ Opus_jll
   3684.8 ms  ✓ IntelOpenMP_jll
   1473.2 ms  ✓ x265_jll
   1408.5 ms  ✓ libpng_jll
   1311.5 ms  ✓ CRlibm_jll
   3596.7 ms  ✓ oneTBB_jll
   1357.7 ms  ✓ Imath_jll
   1505.2 ms  ✓ Arpack_jll
   1395.1 ms  ✓ Libmount_jll
   1414.8 ms  ✓ libfdk_aac_jll
   1423.1 ms  ✓ Libuuid_jll
   1426.8 ms  ✓ FriBidi_jll
   1408.9 ms  ✓ LERC_jll
   1400.6 ms  ✓ Xorg_libXau_jll
   1426.8 ms  ✓ Ogg_jll
   1560.4 ms  ✓ FFTW_jll
   1415.0 ms  ✓ LAME_jll
   1449.0 ms  ✓ Graphite2_jll
   2332.8 ms  ✓ x264_jll
   1453.0 ms  ✓ LLVMOpenMP_jll
   1691.4 ms  ✓ Libiconv_jll
   1461.0 ms  ✓ libaom_jll
   1441.9 ms  ✓ Xorg_libXdmcp_jll
   1718.7 ms  ✓ Giflib_jll
   1756.0 ms  ✓ Expat_jll
   1693.4 ms  ✓ JpegTurbo_jll
   6804.8 ms  ✓ Colors
   3759.6 ms  ✓ ColorVectorSpace
   5463.3 ms  ✓ QOI
   1583.3 ms  ✓ StructArrays
    875.1 ms  ✓ StructUtils → StructUtilsTablesExt
   6611.4 ms  ✓ StableHashTraits
    782.2 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   1313.0 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
   1407.1 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
    931.6 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
    905.9 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
    915.3 ms  ✓ Distances → DistancesChainRulesCoreExt
    920.8 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
   3040.5 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
    846.0 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
   2662.0 ms  ✓ FilePathsBase → FilePathsBaseTestExt
    965.7 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   1315.3 ms  ✓ FilePaths
   1708.8 ms  ✓ SortingAlgorithms
   2839.3 ms  ✓ QuadGK
   1850.6 ms  ✓ SimplePartitions
   7547.0 ms  ✓ BioSequences
  36118.8 ms  ✓ PrettyTables
  20578.9 ms  ✓ Automa
  53418.5 ms  ✓ TiffImages
   1461.0 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1523.4 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
   1475.3 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1473.2 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1399.9 ms  ✓ Adapt → AdaptStaticArraysExt
   1335.0 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
  38533.5 ms  ✓ Polynomials
   7253.7 ms  ✓ JSON
    968.4 ms  ✓ InlineStrings → ParsersExt
   1524.4 ms  ✓ FreeType2_jll
    905.6 ms  ✓ Isoband
   1955.1 ms  ✓ NLopt
   1487.0 ms  ✓ Rmath
   4904.2 ms  ✓ SpecialFunctions
   1225.9 ms  ✓ CRlibm
 Downloading artifact: IntelOpenMP
 Downloading artifact: oneTBB
  11057.6 ms  ✓ MKL_jll
   1806.1 ms  ✓ OpenEXR_jll
   1701.4 ms  ✓ Arpack
   1493.7 ms  ✓ libvorbis_jll
   1875.6 ms  ✓ Pixman_jll
   1795.5 ms  ✓ XML2_jll
   1811.2 ms  ✓ GettextRuntime_jll
   1599.3 ms  ✓ Xorg_libxcb_jll
   1447.1 ms  ✓ Libtiff_jll
   1424.2 ms  ✓ libsixel_jll
   1345.5 ms  ✓ Animations
   1745.7 ms  ✓ Graphics
  29432.1 ms  ✓ ImageCore
   8606.4 ms  ✓ ColorSchemes
   1334.5 ms  ✓ StructArrays → StructArraysSparseArraysExt
    944.3 ms  ✓ StructArrays → StructArraysLinearAlgebraExt
    823.9 ms  ✓ StructArrays → StructArraysAdaptExt
   1589.5 ms  ✓ StructArrays → StructArraysStaticArraysExt
   1346.0 ms  ✓ FiniteDiff
   8750.0 ms  ✓ StatsBase
  88800.5 ms  ✓ DataFrames
  21539.0 ms  ✓ FASTX
   4779.2 ms  ✓ NearestNeighbors
   4398.5 ms  ✓ Interpolations
   5032.0 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   4042.3 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   4563.9 ms  ✓ SimplePolynomials
   4451.4 ms  ✓ ColorBrewer
   2773.6 ms  ✓ WeakRefStrings
   1786.9 ms  ✓ FreeType
   1640.1 ms  ✓ Fontconfig_jll
   3882.2 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   2501.7 ms  ✓ HypergeometricFunctions
   1317.6 ms  ✓ DiffRules
   1371.4 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   4193.1 ms  ✓ IntervalArithmetic
   4843.5 ms  ✓ FFTW
   3860.1 ms  ✓ OpenEXR
    817.2 ms  ✓ LightXML
   1241.0 ms  ✓ Glib_jll
   1110.6 ms  ✓ Xorg_libX11_jll
   2947.8 ms  ✓ ImageBase
   4844.3 ms  ✓ PNGFiles
   9543.3 ms  ✓ Sixel
   8857.4 ms  ✓ JpegTurbo
  15776.2 ms  ✓ PlotUtils
  10306.5 ms  ✓ GeometryBasics
   1347.7 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
   1262.5 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1111.2 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   8944.9 ms  ✓ ParallelKMeans
   2329.1 ms  ✓ FASTX → BioSequencesExt
   8044.6 ms  ✓ Clustering
   3972.6 ms  ✓ LinearAlgebraX
  26565.0 ms  ✓ CSV
   2811.3 ms  ✓ StatsFuns
   6743.0 ms  ✓ ForwardDiff
   1730.8 ms  ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt
   1660.8 ms  ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt
   1637.0 ms  ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt
   1007.2 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
    994.9 ms  ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt
   3450.4 ms  ✓ Polynomials → PolynomialsFFTWExt
   1463.3 ms  ✓ Xorg_libXrender_jll
   1416.6 ms  ✓ Xorg_libXext_jll
   5592.8 ms  ✓ ImageAxes
   2510.5 ms  ✓ Packing
  10029.1 ms  ✓ GridLayoutBase
   3447.4 ms  ✓ ShaderAbstractions
   4698.7 ms  ✓ FreeTypeAbstraction
   3288.8 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
   9119.0 ms  ✓ StatsModels
  13938.4 ms  ✓ Distributions
   2175.1 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   1563.3 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   2686.1 ms  ✓ Interpolations → InterpolationsForwardDiffExt
   1330.0 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
   6686.0 ms  ✓ ExactPredicates
   1431.9 ms  ✓ Cairo_jll
   1384.3 ms  ✓ Libglvnd_jll
   3557.7 ms  ✓ ImageMetadata
  24706.8 ms  ✓ MathTeXEngine
   9553.6 ms  ✓ GLM
   4100.2 ms  ✓ Distributions → DistributionsTestExt
   3612.6 ms  ✓ SimpleRandom
   4112.0 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   7887.6 ms  ✓ MultivariateStats
  12615.0 ms  ✓ GaussianMixtures
   2317.4 ms  ✓ NLSolversBase
   1760.1 ms  ✓ HarfBuzz_jll
   1670.4 ms  ✓ libwebp_jll
   7927.6 ms  ✓ Netpbm
  23380.8 ms  ✓ PhyloNetworks
   5259.6 ms  ✓ KernelDensity
   2603.6 ms  ✓ LineSearches
   1520.8 ms  ✓ libass_jll
   1542.5 ms  ✓ Pango_jll
   8182.7 ms  ✓ WebP
  10273.7 ms  ✓ Optim
   1550.9 ms  ✓ FFMPEG_jll
   2465.8 ms  ✓ Cairo
   4684.9 ms  ✓ ImageIO
   8751.6 ms  ✓ SimpleGraphs
  12974.0 ms  ✓ DelaunayTriangulation
┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
└ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
 184345.2 ms  ✓ Makie
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [27] include_string
    @ ./loading.jl:3013 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5

  3 dependencies had output during precompilation:
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  
┌ Formatting
│  ┌ Warning: DEPRECATION NOTICE
│  │ 
│  │ Formatting.jl has been unmaintained for a while, with some serious
│  │ correctness bugs compromising the original purpose of the package. As a result,
│  │ it has been deprecated - consider using an alternative, such as
│  │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│  │ 
│  │ If you are not using Formatting.jl as a direct dependency, please consider
│  │ opening an issue on any packages you are using that do use it as a dependency.
│  │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│  │ package originally brings it in as a dependency.
│  └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
└  
┌ Makie
│  ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
│  └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
└  

Precompilation completed after 1466.45s


################################################################################
# Testing
#

     Testing PhyloClustering
      Status `/tmp/jl_8H5Eky/Project.toml`
⌅ [13f3f980] CairoMakie v0.11.9
  [aaaa29a8] Clustering v0.15.8
  [861a8166] Combinatorics v1.0.3
  [b4f34e82] Distances v0.10.12
  [59287772] Formatting v0.4.3
  [cc18c42c] GaussianMixtures v0.3.13
  [6f286f6a] MultivariateStats v0.10.3
  [42b8e9d4] ParallelKMeans v1.1.0
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [295af30f] Revise v3.12.3
  [860ef19b] StableRNGs v1.0.4
⌅ [2913bbd2] StatsBase v0.33.21
  [fd094767] Suppressor v0.2.8
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_8H5Eky/Manifest.toml`
  [47edcb42] ADTypes v1.19.0
  [621f4979] AbstractFFTs v1.5.0
  [398f06c4] AbstractLattices v0.3.1
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.4.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.22.0
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.8
  [18cc8868] BaseDirs v1.3.2
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [fa961155] CEnum v0.5.0
  [96374032] CRlibm v1.0.2
  [336ed68f] CSV v0.10.15
  [159f3aea] Cairo v1.1.1
⌅ [13f3f980] CairoMakie v0.11.9
  [d360d2e6] ChainRulesCore v1.26.0
  [aaaa29a8] Clustering v0.15.8
  [da1fd8a2] CodeTracking v3.0.0
  [944b1d66] CodecZlib v0.7.8
  [a2cac450] ColorBrewer v0.4.2
  [35d6a980] ColorSchemes v3.31.0
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.3
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [807dbc54] Compiler v0.1.1
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
⌅ [927a84f5] DelaunayTriangulation v0.8.12
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.12
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.9
  [411431e0] Extents v0.1.6
  [c2308a5c] FASTX v2.1.7
  [7a1cc6ca] FFTW v1.10.0
  [5789e2e9] FileIO v1.17.1
⌅ [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.15.0
  [6a86dc24] FiniteDiff v2.29.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [59287772] Formatting v0.4.3
  [f6369f11] ForwardDiff v1.3.0
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] Functors v0.4.12
  [38e38edf] GLM v1.9.0
  [cc18c42c] GaussianMixtures v0.3.13
  [68eda718] GeoFormatTypes v0.4.5
⌃ [cf35fbd7] GeoInterface v1.4.1
⌅ [5c1252a2] GeometryBasics v0.4.11
  [a2bd30eb] Graphics v1.1.3
⌅ [3955a311] GridLayoutBase v0.10.2
  [42e2da0e] Grisu v1.0.2
  [076d061b] HashArrayMappedTries v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.5
  [18e54dd8] IntegerMathUtils v0.1.3
  [a98d9a8b] Interpolations v0.16.2
  [d1acc4aa] IntervalArithmetic v1.0.2
  [8197267c] IntervalSets v0.7.13
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] JLD2 v0.5.15
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.3.0
  [b835a17e] JpegTurbo v0.1.6
  [aa1ae85d] JuliaInterpreter v0.10.8
  [5ab0869b] KernelDensity v0.6.10
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [9c8b4983] LightXML v0.9.3
  [d3d80556] LineSearches v7.5.1
  [9b3f67b0] LinearAlgebraX v0.2.10
  [2ab3a3ac] LogExpFunctions v0.3.29
  [6f1432cf] LoweredCodeUtils v3.5.0
  [e80e1ace] MLJModelInterface v1.12.0
  [1914dd2f] MacroTools v0.5.16
⌅ [ee78f7c6] Makie v0.20.8
⌅ [20f20a25] MakieCore v0.7.3
  [dbb5928d] MappedArrays v0.4.2
⌅ [0a4f8689] MathTeXEngine v0.5.7
  [e1d29d7a] Missings v1.2.0
  [7475f97c] Mods v2.2.6
  [e94cdb99] MosaicViews v0.3.4
  [3b2b4ff1] Multisets v0.4.5
  [6f286f6a] MultivariateStats v0.10.3
  [d41bc354] NLSolversBase v7.10.0
  [76087f3c] NLopt v1.2.1
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.24
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.13.3
  [bac558e1] OrderedCollections v1.8.1
⌃ [90014a1f] PDMats v0.11.35
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [42b8e9d4] ParallelKMeans v1.1.0
  [69de0a69] Parsers v2.8.3
  [2ae35dd2] Permutations v0.4.23
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [3bbf5609] PikaParser v0.6.1
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.4.4
  [647866c9] PolygonOps v0.1.2
⌃ [f27b6e38] Polynomials v4.0.21
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [08abe8d2] PrettyTables v3.1.2
  [27ebfcd6] Primes v0.5.7
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.2
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
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  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [295af30f] Revise v3.12.3
  [286e9d63] RingLists v0.2.9
  [79098fc4] Rmath v0.9.0
  [5eaf0fd0] RoundingEmulator v0.2.1
  [fdea26ae] SIMD v3.7.2
  [30f210dd] ScientificTypesBase v3.0.0
  [6e75b9c4] ScikitLearnBase v0.5.0
  [7e506255] ScopedValues v1.5.0
  [6c6a2e73] Scratch v1.3.0
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  [efcf1570] Setfield v1.1.2
⌅ [65257c39] ShaderAbstractions v0.4.1
  [1277b4bf] ShiftedArrays v2.0.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [55797a34] SimpleGraphs v0.8.7
  [ec83eff0] SimplePartitions v0.3.3
  [cc47b68c] SimplePolynomials v0.2.18
  [a6525b86] SimpleRandom v0.3.2
  [699a6c99] SimpleTraits v0.9.5
  [45858cf5] Sixel v0.1.5
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
⌅ [c5dd0088] StableHashTraits v1.3.4
  [860ef19b] StableRNGs v1.0.4
  [cae243ae] StackViews v0.1.2
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.2
  [3eaba693] StatsModels v0.7.7
  [892a3eda] StringManipulation v0.4.2
  [354b36f9] StringViews v1.3.5
⌅ [09ab397b] StructArrays v0.6.21
  [856f2bd8] StructTypes v1.11.0
  [ec057cc2] StructUtils v2.6.0
  [fd094767] Suppressor v0.2.8
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [62fd8b95] TensorCore v0.1.1
  [731e570b] TiffImages v0.11.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [981d1d27] TriplotBase v0.1.0
  [9d95972d] TupleTools v1.6.0
  [7200193e] Twiddle v1.1.2
  [1cfade01] UnicodeFun v0.4.1
  [c4a57d5a] UnsafeArrays v1.0.8
  [ecbed89c] WeakKeyIdDicts v0.1.0
  [ea10d353] WeakRefStrings v1.4.2
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
⌅ [68821587] Arpack_jll v3.5.1+1
  [6e34b625] Bzip2_jll v1.0.9+0
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.5+0
  [5ae413db] EarCut_jll v2.2.4+0
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  [d7e528f0] FreeType2_jll v2.13.4+0
  [559328eb] FriBidi_jll v1.0.17+0
  [b0724c58] GettextRuntime_jll v0.22.4+0
  [59f7168a] Giflib_jll v5.2.3+0
  [7746bdde] Glib_jll v2.86.0+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
  [aacddb02] JpegTurbo_jll v3.1.3+0
  [c1c5ebd0] LAME_jll v3.100.3+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
⌅ [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.2+0
  [89763e89] Libtiff_jll v4.7.2+0
  [38a345b3] Libuuid_jll v2.41.2+0
  [856f044c] MKL_jll v2025.2.0+0
  [079eb43e] NLopt_jll v2.10.0+0
  [e7412a2a] Ogg_jll v1.3.6+0
  [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] OpenEXR_jll v3.2.4+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.5.2+0
  [36c8627f] Pango_jll v1.57.0+0
⌅ [30392449] Pixman_jll v0.44.2+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [02c8fc9c] XML2_jll v2.15.1+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [9a68df92] isoband_jll v0.2.3+0
  [a4ae2306] libaom_jll v3.13.1+0
  [0ac62f75] libass_jll v0.17.4+0
  [f638f0a6] libfdk_aac_jll v2.0.4+0
  [b53b4c65] libpng_jll v1.6.51+0
  [075b6546] libsixel_jll v1.10.5+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [c5f90fcd] libwebp_jll v1.6.0+0
  [1317d2d5] oneTBB_jll v2022.0.0+1
  [1270edf5] x264_jll v10164.0.1+0
  [dfaa095f] x265_jll v4.1.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [8bf52ea8] CRC32c v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
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  [3fa0cd96] REPL v1.11.0
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  [9e88b42a] Serialization v1.11.0
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  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
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  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
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  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [27] include_string
    @ ./loading.jl:3013 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [27] include_string
    @ ./loading.jl:3013 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ CairoMakie
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

CairoMakie 
Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_vnDpyF" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1

Testing failed after 225.45s

ERROR: LoadError: Package PhyloClustering errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 1802.41s: package fails to precompile