Package evaluation to test Pesto on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T23:06:44.530 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.84s ################################################################################ # Installation # Installing Pesto... Resolving package versions... Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed CommonWorldInvalidations ──────────── v1.0.0 Installed InlineStrings ─────────────────────── v1.4.5 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed OrderedCollections ────────────────── v1.8.1 Installed OrdinaryDiffEqRosenbrock ──────────── v1.18.1 Installed FastPower ─────────────────────────── v1.2.0 Installed EnzymeCore ────────────────────────── v0.8.17 Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0 Installed PreallocationTools ────────────────── v0.4.34 Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0 Installed Optim ─────────────────────────────── v1.13.3 Installed SentinelArrays ────────────────────── v1.4.8 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed NaNMath ───────────────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed OrdinaryDiffEqQPRK ────────────────── v1.4.0 Installed StaticArrayInterface ──────────────── v1.8.0 Installed QuadGK ────────────────────────────── v2.11.2 Installed NonlinearSolveBase ────────────────── v2.4.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed EnumX ─────────────────────────────── v1.0.5 Installed NLSolversBase ─────────────────────── v7.10.0 Installed Tables ────────────────────────────── v1.12.1 Installed BracketingNonlinearSolve ──────────── v1.6.0 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.6.0 Installed DiffEqBase ────────────────────────── v6.192.0 Installed LinearSolve ───────────────────────── v3.48.0 Installed Reexport ──────────────────────────── v1.2.2 Installed Jieko ─────────────────────────────── v0.2.1 Installed InverseFunctions ──────────────────── v0.1.17 Installed Missings ──────────────────────────── v1.2.0 Installed Static ────────────────────────────── v1.3.1 Installed Preferences ───────────────────────── v1.5.0 Installed NonlinearSolve ────────────────────── v4.12.0 Installed TableTraits ───────────────────────── v1.0.1 Installed OrdinaryDiffEqNordsieck ───────────── v1.4.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.5.0 Installed Crayons ───────────────────────────── v4.1.1 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed RecursiveArrayTools ───────────────── v3.39.0 Installed OrdinaryDiffEqLinear ──────────────── v1.6.0 Installed UnPack ────────────────────────────── v1.0.2 Installed DiffResults ───────────────────────── v1.1.0 Installed ADTypes ───────────────────────────── v1.19.0 Installed MacroTools ────────────────────────── v0.5.16 Installed GenericSchur ──────────────────────── v0.5.6 Installed ManualMemory ──────────────────────── v0.1.8 Installed DataStructures ────────────────────── v0.19.3 Installed RCall ─────────────────────────────── v0.14.10 Installed FillArrays ────────────────────────── v1.15.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed VectorizationBase ─────────────────── v0.21.72 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed StatsBase ─────────────────────────── v0.34.8 Installed ArrayInterface ────────────────────── v7.22.0 Installed SciMLJacobianOperators ────────────── v0.1.11 Installed HostCPUFeatures ───────────────────── v0.1.17 Installed DataValueInterfaces ───────────────── v1.0.0 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LoggingExtras ─────────────────────── v1.2.0 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.3 Installed StructUtils ───────────────────────── v2.6.0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed IrrationalConstants ───────────────── v0.2.6 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed OrdinaryDiffEqRKN ─────────────────── v1.5.0 Installed ArrayLayouts ──────────────────────── v1.12.2 Installed OrdinaryDiffEqExtrapolation ───────── v1.9.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.6.0 Installed OrdinaryDiffEqPRK ─────────────────── v1.4.0 Installed Setfield ──────────────────────────── v1.1.2 Installed PooledArrays ──────────────────────── v1.4.3 Installed Pesto ─────────────────────────────── v0.1.7 Installed PDMats ────────────────────────────── v0.11.36 Installed WorkerUtilities ───────────────────── v1.6.1 Installed NonlinearSolveQuasiNewton ─────────── v1.11.0 Installed Moshi ─────────────────────────────── v0.3.7 Installed DocStringExtensions ───────────────── v0.9.5 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.5.0 Installed CompositionsBase ──────────────────── v0.1.2 Installed CommonSolve ───────────────────────── v0.2.4 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed VersionParsing ────────────────────── v1.3.0 Installed ForwardDiff ───────────────────────── v0.10.39 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed StatsModels ───────────────────────── v0.7.7 Installed DifferentiationInterface ──────────── v0.7.12 Installed AliasTables ───────────────────────── v1.1.3 Installed SLEEFPirates ──────────────────────── v0.6.43 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed LineSearch ────────────────────────── v0.1.4 Installed OrdinaryDiffEqStabilizedRK ────────── v1.4.0 Installed OrdinaryDiffEq ────────────────────── v6.103.0 Installed ShiftedArrays ─────────────────────── v2.0.0 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed RecipesBase ───────────────────────── v1.3.4 Installed DataAPI ───────────────────────────── v1.16.0 Installed InvertedIndices ───────────────────── v1.3.1 Installed SciMLOperators ────────────────────── v1.13.0 Installed Krylov ────────────────────────────── v0.10.3 Installed OrdinaryDiffEqBDF ─────────────────── v1.10.1 Installed OrdinaryDiffEqSymplecticRK ────────── v1.7.0 Installed Conda ─────────────────────────────── v1.10.3 Installed SciMLStructures ───────────────────── v1.7.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed OrdinaryDiffEqLowStorageRK ────────── v1.7.0 Installed SciMLPublic ───────────────────────── v1.0.0 Installed StringManipulation ────────────────── v0.4.2 Installed StaticArrays ──────────────────────── v1.9.15 Installed OrdinaryDiffEqDifferentiation ─────── v1.16.1 Installed Requires ──────────────────────────── v1.3.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.15.0 Installed DiffRules ─────────────────────────── v1.15.1 Installed LogExpFunctions ───────────────────── v0.3.29 Installed JSON ──────────────────────────────── v1.3.0 Installed SciMLBase ─────────────────────────── v2.127.0 Installed OrdinaryDiffEqCore ────────────────── v1.36.0 Installed NonlinearSolveFirstOrder ──────────── v1.10.0 Installed Parsers ───────────────────────────── v2.8.3 Installed PrettyTables ──────────────────────── v3.1.2 Installed Rmath ─────────────────────────────── v0.9.0 Installed Distributions ─────────────────────── v0.25.122 Installed OrdinaryDiffEqExplicitRK ──────────── v1.4.0 Installed FastClosures ──────────────────────── v0.3.2 Installed FiniteDiff ────────────────────────── v2.29.0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed StatsFuns ─────────────────────────── v1.5.2 Installed Polyester ─────────────────────────── v0.7.18 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.7.0 Installed OrdinaryDiffEqFeagin ──────────────── v1.4.0 Installed OrdinaryDiffEqSSPRK ───────────────── v1.7.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed CSV ───────────────────────────────── v0.10.15 Installed DataFrames ────────────────────────── v1.8.1 Installed CategoricalArrays ─────────────────── v1.0.2 Installed OrdinaryDiffEqPDIRK ───────────────── v1.6.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqDefault ─────────────── v1.8.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.7.0 Installed Accessors ─────────────────────────── v0.1.42 Installed FilePathsBase ─────────────────────── v0.9.24 Installed OrdinaryDiffEqVerner ──────────────── v1.6.0 Installed Adapt ─────────────────────────────── v4.4.0 Installed ExponentialUtilities ──────────────── v1.28.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed ConstructionBase ──────────────────── v1.6.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed TranscodingStreams ────────────────── v0.11.3 Installed Compat ────────────────────────────── v4.18.1 Installed PositiveFactorizations ────────────── v0.2.4 Installed StrideArraysCore ──────────────────── v0.5.8 Installed Statistics ────────────────────────── v1.11.1 Installed LazyArrays ────────────────────────── v2.9.3 Installed ExproniconLite ────────────────────── v0.10.14 Installed LoopVectorization ─────────────────── v0.12.173 Installed PrecompileTools ───────────────────── v1.3.3 Installed StatsAPI ──────────────────────────── v1.7.1 Installed ProgressMeter ─────────────────────── v1.11.0 Installed TimerOutputs ──────────────────────── v0.5.29 Installed WinReg ────────────────────────────── v1.0.0 Installed IfElse ────────────────────────────── v0.1.1 Installed OffsetArrays ──────────────────────── v1.17.0 Installed CPUSummary ────────────────────────── v0.2.7 Installed ChainRulesCore ────────────────────── v1.26.0 Installed MuladdMacro ───────────────────────── v0.2.4 Installed OrdinaryDiffEqTsit5 ───────────────── v1.5.0 Installed SciMLLogging ──────────────────────── v1.5.0 Installed PtrArrays ─────────────────────────── v1.3.0 Installed SimpleNonlinearSolve ──────────────── v2.9.0 Installed OrdinaryDiffEqFunctionMap ─────────── v1.5.0 Installed LineSearches ──────────────────────── v7.5.1 Installed PolyesterWeave ────────────────────── v0.2.2 Installed SpecialFunctions ──────────────────── v2.6.1 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [f3a6be2d] + Pesto v0.1.7 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v1.0.2 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.192.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [d4d017d3] + ExponentialUtilities v1.28.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [ae98c720] + Jieko v0.2.1 [ba0b0d4f] + Krylov v0.10.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.9.3 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.5.1 [7ed4a6bd] + LinearSolve v3.48.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.4.0 [5959db7a] + NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.11.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.103.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [f3a6be2d] + Pesto v0.1.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [6f49c342] + RCall v0.14.10 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0bca4576] + SciMLBase v2.127.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [727e6d20] + SimpleNonlinearSolve v2.9.0 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.2 [ec057cc2] + StructUtils v2.6.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.72 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/774a8a3dc0fe4b06c576adba8b21035f557bb53b/build.log` Installation completed after 139.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4420.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4057.4 ms ✓ MacroTools 1609.4 ms ✓ InlineStrings 816.5 ms ✓ Reexport 1143.2 ms ✓ ConstructionBase 1914.3 ms ✓ IrrationalConstants 815.1 ms ✓ DataValueInterfaces 863.1 ms ✓ StatsAPI 904.1 ms ✓ VersionParsing 769.8 ms ✓ CommonSolve 1210.0 ms ✓ TranscodingStreams 864.6 ms ✓ LaTeXStrings 1170.4 ms ✓ Statistics 939.5 ms ✓ StaticArraysCore 1228.4 ms ✓ EnzymeCore 806.1 ms ✓ IfElse 819.0 ms ✓ PtrArrays 964.2 ms ✓ ManualMemory 983.7 ms ✓ PositiveFactorizations 864.6 ms ✓ DataAPI 853.2 ms ✓ SciMLPublic 3256.8 ms ✓ ExproniconLite 788.9 ms ✓ CommonWorldInvalidations 790.7 ms ✓ FastPower 863.4 ms ✓ InvertedIndices 893.8 ms ✓ InverseFunctions 812.7 ms ✓ CompositionsBase 848.6 ms ✓ ShiftedArrays 807.8 ms ✓ SimpleUnPack 814.5 ms ✓ WinReg 831.9 ms ✓ MuladdMacro 864.3 ms ✓ EnumX 974.2 ms ✓ WorkerUtilities 1933.8 ms ✓ FillArrays 861.3 ms ✓ ExprTools 831.9 ms ✓ UnPack 807.4 ms ✓ ConcreteStructs 1365.3 ms ✓ OrderedCollections 1380.0 ms ✓ FunctionWrappers 1307.5 ms ✓ ADTypes 1133.5 ms ✓ DocStringExtensions 834.7 ms ✓ FastClosures 1515.3 ms ✓ OffsetArrays 757.2 ms ✓ SIMDTypes 737.8 ms ✓ IteratorInterfaceExtensions 1671.6 ms ✓ Crayons 12751.3 ms ✓ Krylov 2420.0 ms ✓ GenericSchur 993.7 ms ✓ NaNMath 1170.7 ms ✓ Requires 1173.3 ms ✓ SuiteSparse 1659.4 ms ✓ CpuId 2607.9 ms ✓ SentinelArrays 1036.7 ms ✓ LoggingExtras 1363.6 ms ✓ StructUtils 1633.9 ms ✓ ProgressMeter 1160.1 ms ✓ Compat 1127.9 ms ✓ Preferences 1616.4 ms ✓ CommonSubexpressions 814.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 942.4 ms ✓ CodecZlib 1241.8 ms ✓ Statistics → SparseArraysExt 877.1 ms ✓ DiffResults 928.3 ms ✓ AliasTables 1618.9 ms ✓ ThreadingUtilities 944.5 ms ✓ Missings 1038.4 ms ✓ PooledArrays 2857.7 ms ✓ Jieko 849.9 ms ✓ InverseFunctions → InverseFunctionsDatesExt 865.4 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1406.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1035.8 ms ✓ FillArrays → FillArraysStatisticsExt 2773.7 ms ✓ TimerOutputs 1216.2 ms ✓ RuntimeGeneratedFunctions 3480.6 ms ✓ DataStructures 771.6 ms ✓ FunctionWrappersWrappers 765.1 ms ✓ ADTypes → ADTypesConstructionBaseExt 1768.8 ms ✓ DifferentiationInterface 751.1 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1329.6 ms ✓ LogExpFunctions 750.7 ms ✓ TableTraits 921.3 ms ✓ Adapt 2228.4 ms ✓ PDMats 818.4 ms ✓ Compat → CompatLinearAlgebraExt 920.6 ms ✓ PrecompileTools 1187.7 ms ✓ JLLWrappers 1699.2 ms ✓ TruncatedStacktraces 1317.4 ms ✓ SciMLLogging 2747.2 ms ✓ Setfield 14771.3 ms ✓ Moshi 4434.0 ms ✓ Accessors 1038.8 ms ✓ SortingAlgorithms 2128.0 ms ✓ QuadGK 1247.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 801.5 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1645.4 ms ✓ Tables 1161.5 ms ✓ ArrayInterface 1294.5 ms ✓ Adapt → AdaptSparseArraysExt 1221.6 ms ✓ GPUArraysCore 780.4 ms ✓ EnzymeCore → AdaptExt 823.0 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1401.6 ms ✓ FillArrays → FillArraysPDMatsExt 2490.8 ms ✓ ChainRulesCore 2040.5 ms ✓ FilePathsBase 3992.9 ms ✓ CategoricalArrays 3179.2 ms ✓ StringManipulation 13535.4 ms ✓ StaticArrays 2803.8 ms ✓ RecipesBase 16505.6 ms ✓ Parsers 5279.1 ms ✓ Static 11943.3 ms ✓ SparseMatrixColorings 1404.6 ms ✓ Rmath_jll 1439.1 ms ✓ OpenSpecFun_jll 5330.1 ms ✓ IntelOpenMP_jll 4999.9 ms ✓ oneTBB_jll 2448.3 ms ✓ Accessors → LinearAlgebraExt 4406.4 ms ✓ StatsBase 872.8 ms ✓ StructUtils → StructUtilsTablesExt 792.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2053.8 ms ✓ MaybeInplace 1288.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 860.5 ms ✓ SciMLStructures 1710.9 ms ✓ PreallocationTools 823.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 848.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1343.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 877.3 ms ✓ ADTypes → ADTypesChainRulesCoreExt 927.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3053.7 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 866.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 969.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1119.4 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 39200.5 ms ✓ PrettyTables 1520.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1463.8 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1486.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 23464.7 ms ✓ ArrayLayouts 1467.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1430.2 ms ✓ Adapt → AdaptStaticArraysExt 1590.3 ms ✓ Accessors → StaticArraysExt 2131.0 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 7391.4 ms ✓ JSON 969.8 ms ✓ InlineStrings → ParsersExt 955.3 ms ✓ BitTwiddlingConvenienceFunctions 2362.5 ms ✓ CPUSummary 3996.9 ms ✓ StaticArrayInterface 1815.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1662.5 ms ✓ Rmath 5018.5 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 9897.2 ms ✓ MKL_jll 4960.2 ms ✓ SciMLOperators 1450.1 ms ✓ PDMats → StatsBaseExt 1568.5 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1298.1 ms ✓ FiniteDiff 3646.9 ms ✓ SymbolicIndexingInterface 1330.0 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 33769.3 ms ✓ ExponentialUtilities 82863.6 ms ✓ DataFrames 3531.3 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 2005.9 ms ✓ Conda 1164.2 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 2491.7 ms ✓ WeakRefStrings 1497.0 ms ✓ HostCPUFeatures 1748.0 ms ✓ PolyesterWeave 1026.3 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1545.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1176.2 ms ✓ CloseOpenIntervals 1246.7 ms ✓ LayoutPointers 3798.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 4727.7 ms ✓ FastGaussQuadrature 2335.6 ms ✓ HypergeometricFunctions 1273.0 ms ✓ DiffRules 1006.9 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1560.4 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1395.6 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1243.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 959.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3359.3 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 4637.7 ms ✓ RecursiveArrayTools 5312.4 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 6844.9 ms ✓ LazyArrays 28376.1 ms ✓ CSV 13746.1 ms ✓ VectorizationBase 2045.4 ms ✓ StrideArraysCore 2884.3 ms ✓ StatsFuns 7763.2 ms ✓ ForwardDiff 1695.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1202.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 23164.7 ms ✓ SciMLBase 3512.4 ms ✓ LazyArrays → LazyArraysStaticArraysExt 4146.9 ms ✓ SLEEFPirates 1849.0 ms ✓ Polyester 3289.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1001.2 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 5025.9 ms ✓ StatsModels 9188.6 ms ✓ Distributions 2594.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1917.8 ms ✓ FastPower → FastPowerForwardDiffExt 2368.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1832.5 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 2150.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2874.5 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 4096.2 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2747.5 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 38150.1 ms ✓ LoopVectorization 1992.9 ms ✓ FastBroadcast 17156.3 ms ✓ RCall 3292.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 4251.4 ms ✓ SciMLBase → SciMLBaseDistributionsExt 3116.2 ms ✓ NLSolversBase 19329.4 ms ✓ LinearSolve 7429.9 ms ✓ SciMLJacobianOperators 3355.0 ms ✓ LoopVectorization → SpecialFunctionsExt 3638.4 ms ✓ LoopVectorization → ForwardDiffExt 1864.2 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 12687.7 ms ✓ SciMLBase → SciMLBaseRCallExt 5029.6 ms ✓ LineSearches 5951.9 ms ✓ LinearSolve → LinearSolveEnzymeExt 9873.1 ms ✓ LinearSolve → LinearSolveSparseArraysExt 9134.4 ms ✓ LinearSolve → LinearSolveForwardDiffExt 10050.7 ms ✓ LineSearch 15781.9 ms ✓ NonlinearSolveBase 6410.3 ms ✓ DiffEqBase 10137.0 ms ✓ Optim 4239.3 ms ✓ LineSearch → LineSearchLineSearchesExt 3627.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 3592.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2927.9 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 5941.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 3052.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 4433.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8617.3 ms ✓ BracketingNonlinearSolve 4980.4 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 3544.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3883.3 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 9836.6 ms ✓ OrdinaryDiffEqCore 30006.6 ms ✓ NonlinearSolveQuasiNewton 17521.4 ms ✓ NonlinearSolveSpectralMethods 51105.8 ms ✓ NonlinearSolveFirstOrder 3456.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 3580.3 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 7662.4 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3954.6 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3402.7 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 22127.7 ms ✓ SimpleNonlinearSolve 6830.2 ms ✓ OrdinaryDiffEqStabilizedRK 5016.5 ms ✓ OrdinaryDiffEqFunctionMap 61939.9 ms ✓ OrdinaryDiffEqVerner 5437.2 ms ✓ OrdinaryDiffEqQPRK 6117.9 ms ✓ OrdinaryDiffEqSymplecticRK 8919.9 ms ✓ OrdinaryDiffEqLowOrderRK 6448.5 ms ✓ OrdinaryDiffEqFeagin 7714.7 ms ✓ OrdinaryDiffEqSSPRK 6562.4 ms ✓ OrdinaryDiffEqRKN 6610.1 ms ✓ OrdinaryDiffEqHighOrderRK 5565.9 ms ✓ OrdinaryDiffEqExplicitRK 10652.0 ms ✓ OrdinaryDiffEqTsit5 7396.9 ms ✓ OrdinaryDiffEqLinear 4871.9 ms ✓ OrdinaryDiffEqPRK 8181.2 ms ✓ OrdinaryDiffEqLowStorageRK 13227.8 ms ✓ OrdinaryDiffEqDifferentiation 3548.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6478.0 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 4767.2 ms ✓ OrdinaryDiffEqNordsieck 6989.6 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 34290.8 ms ✓ NonlinearSolve 15561.1 ms ✓ OrdinaryDiffEqExtrapolation 41970.2 ms ✓ OrdinaryDiffEqRosenbrock 14115.7 ms ✓ OrdinaryDiffEqExponentialRK 16801.3 ms ✓ OrdinaryDiffEqNonlinearSolve 13017.3 ms ✓ OrdinaryDiffEqIMEXMultistep 13646.8 ms ✓ OrdinaryDiffEqStabilizedIRK 15304.0 ms ✓ OrdinaryDiffEqPDIRK 16352.5 ms ✓ OrdinaryDiffEqSDIRK 60358.7 ms ✓ OrdinaryDiffEqFIRK 31666.6 ms ✓ OrdinaryDiffEqBDF 74249.1 ms ✓ OrdinaryDiffEqDefault 23365.6 ms ✓ OrdinaryDiffEq 57019.0 ms ✓ Pesto 278 dependencies successfully precompiled in 1691 seconds. 38 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 1688.95s ################################################################################ # Testing # Testing Pesto Status `/tmp/jl_7EF4Gg/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.122 [442a2c76] FastGaussQuadrature v1.1.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [bdcacae8] LoopVectorization v0.12.173 [429524aa] Optim v1.13.3 [1dea7af3] OrdinaryDiffEq v6.103.0 [f3a6be2d] Pesto v0.1.7 [92933f4c] ProgressMeter v1.11.0 [6f49c342] RCall v0.14.10 [0bca4576] SciMLBase v2.127.0 [2913bbd2] StatsBase v0.34.8 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_7EF4Gg/Manifest.toml` [47edcb42] ADTypes v1.19.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.192.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [d4d017d3] ExponentialUtilities v1.28.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [ae98c720] Jieko v0.2.1 [ba0b0d4f] Krylov v0.10.3 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.9.3 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.5.1 [7ed4a6bd] LinearSolve v3.48.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [bdcacae8] LoopVectorization v0.12.173 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.4.0 [5959db7a] NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.11.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.103.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [f3a6be2d] Pesto v0.1.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [6f49c342] RCall v0.14.10 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0bca4576] SciMLBase v2.127.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.13.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [727e6d20] SimpleNonlinearSolve v2.9.0 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [7792a7ef] StrideArraysCore v0.5.8 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.0 [2efcf032] SymbolicIndexingInterface v0.3.46 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.72 [81def892] VersionParsing v1.3.0 [ea10d353] WeakRefStrings v1.4.2 [1b915085] WinReg v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 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Testing Running tests... Test Summary: | Pass Total Time Likelihood regression | 1 1 1m19.3s Likelihood regression other tree: Error During Test at /home/pkgeval/.julia/packages/Pesto/A7BDl/test/runtests.jl:21 Got exception outside of a @test REvalError: Error in library(ape) : there is no package called ‘ape’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/HIJsY/src/io.jl:173 [2] handle_eval_stderr @ ~/.julia/packages/RCall/HIJsY/src/io.jl:167 [inlined] [3] reval_p(expr::Ptr{RCall.LangSxp}, env::Ptr{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:103 [4] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:119 [5] reval(str::String, env::RCall.RObject{RCall.EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:136 [6] macro expansion @ ~/.julia/packages/RCall/HIJsY/src/macros.jl:74 [inlined] [7] readtree(treefile::String) @ Pesto ~/.julia/packages/Pesto/A7BDl/src/io/readtree.jl:23 [8] top-level scope @ ~/.julia/packages/Pesto/A7BDl/test/runtests.jl:23 [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [10] macro expansion @ ~/.julia/packages/Pesto/A7BDl/test/runtests.jl:29 [inlined] [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [15] _start() @ Base ./client.jl:577 Test Summary: | Error Total Time Likelihood regression other tree | 1 1 5.5s RNG of the outermost testset: Random.Xoshiro(0x233683ac4fcdb70c, 0x6b714f1632628890, 0xf19e0e105b5b8e7d, 0x1a18da8f6ae65a68, 0xd44eb12c9c0b9205) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Pesto/A7BDl/test/runtests.jl:21 Testing failed after 174.87s ERROR: LoadError: Package Pesto errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 2067.17s: package tests unexpectedly errored