Package evaluation to test NeutralLandscapes on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T15:51:43.167 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.41s ################################################################################ # Installation # Installing NeutralLandscapes... Resolving package versions... Installed Rmath_jll ─────────────── v0.5.1+0 Installed HypergeometricFunctions ─ v0.3.28 Installed AliasTables ───────────── v1.1.3 Installed FillArrays ────────────── v1.15.0 Installed HaltonSequences ───────── v0.2.0 Installed DataStructures ────────── v0.18.22 Installed NearestNeighbors ──────── v0.4.24 Installed StatsBase ─────────────── v0.34.8 Installed OrderedCollections ────── v1.8.1 Installed DataAPI ───────────────── v1.16.0 Installed Compat ────────────────── v4.18.1 Installed StatsAPI ──────────────── v1.7.1 Installed StaticArraysCore ──────── v1.4.4 Installed Statistics ────────────── v1.11.1 Installed StaticArrays ──────────── v1.9.15 Installed IrrationalConstants ───── v0.2.6 Installed PrecompileTools ───────── v1.3.3 Installed Distances ─────────────── v0.10.12 Installed OpenSpecFun_jll ───────── v0.5.6+0 Installed NaNMath ───────────────── v1.1.3 Installed Rmath ─────────────────── v0.9.0 Installed QuadGK ────────────────── v2.11.2 Installed IntegerMathUtils ──────── v0.1.3 Installed LogExpFunctions ───────── v0.3.29 Installed Reexport ──────────────── v1.2.2 Installed Missings ──────────────── v1.2.0 Installed StatsFuns ─────────────── v1.5.2 Installed PtrArrays ─────────────── v1.3.0 Installed SpecialFunctions ──────── v2.6.1 Installed Preferences ───────────── v1.5.0 Installed NeutralLandscapes ─────── v0.1.5 Installed Distributions ─────────── v0.25.122 Installed JLLWrappers ───────────── v1.7.1 Installed Primes ────────────────── v0.5.7 Installed PDMats ────────────────── v0.11.36 Installed DocStringExtensions ───── v0.9.5 Installed SortingAlgorithms ─────── v1.2.2 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [71847384] + NeutralLandscapes v0.1.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [13907d55] + HaltonSequences v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.3 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.24 [71847384] + NeutralLandscapes v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4231.9 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 732.5 ms ✓ Reexport 1087.1 ms ✓ Statistics 822.0 ms ✓ DataAPI 2115.2 ms ✓ IrrationalConstants 942.0 ms ✓ StaticArraysCore 801.3 ms ✓ StatsAPI 1032.3 ms ✓ OrderedCollections 879.3 ms ✓ DocStringExtensions 1989.1 ms ✓ FillArrays 755.4 ms ✓ IntegerMathUtils 750.8 ms ✓ PtrArrays 1219.1 ms ✓ SuiteSparse 1026.6 ms ✓ NaNMath 1135.3 ms ✓ Compat 1110.7 ms ✓ Preferences 1279.6 ms ✓ Statistics → SparseArraysExt 936.1 ms ✓ Missings 1440.6 ms ✓ Distances 1379.1 ms ✓ LogExpFunctions 1210.7 ms ✓ FillArrays → FillArraysSparseArraysExt 744.8 ms ✓ FillArrays → FillArraysStatisticsExt 965.7 ms ✓ Primes 946.5 ms ✓ AliasTables 1666.8 ms ✓ PDMats 763.1 ms ✓ Compat → CompatLinearAlgebraExt 1148.6 ms ✓ JLLWrappers 905.7 ms ✓ PrecompileTools 1296.9 ms ✓ Distances → DistancesSparseArraysExt 809.1 ms ✓ HaltonSequences 1538.0 ms ✓ FillArrays → FillArraysPDMatsExt 3779.2 ms ✓ DataStructures 1400.0 ms ✓ Rmath_jll 1394.5 ms ✓ OpenSpecFun_jll 13210.6 ms ✓ StaticArrays 1454.9 ms ✓ SortingAlgorithms 2682.6 ms ✓ QuadGK 1418.4 ms ✓ Rmath 4698.0 ms ✓ SpecialFunctions 1411.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 5055.5 ms ✓ StatsBase 2423.3 ms ✓ HypergeometricFunctions 4733.9 ms ✓ NearestNeighbors 1951.7 ms ✓ PDMats → StatsBaseExt 2795.4 ms ✓ StatsFuns 9528.2 ms ✓ Distributions WARNING: Imported binding NearestNeighbors.always_false was undeclared at import time during import to NeutralLandscapes. WARNING: method definition for #_landscape!#7 at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/diamondsquare.jl:62 declares type variable IT but does not use it. WARNING: method definition for _landscape! at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/edgegradient.jl:18 declares type variable IT but does not use it. WARNING: method definition for _landscape! at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/planargradient.jl:18 declares type variable IT but does not use it. 4447.2 ms ✓ NeutralLandscapes 46 dependencies successfully precompiled in 96 seconds. 14 already precompiled. 1 dependency had output during precompilation: ┌ NeutralLandscapes │ WARNING: Imported binding NearestNeighbors.always_false was undeclared at import time during import to NeutralLandscapes. │ WARNING: method definition for #_landscape!#7 at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/diamondsquare.jl:62 declares type variable IT but does not use it. │ WARNING: method definition for _landscape! at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/edgegradient.jl:18 declares type variable IT but does not use it. │ WARNING: method definition for _landscape! at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/src/makers/planargradient.jl:18 declares type variable IT but does not use it. └ Precompilation completed after 112.74s ################################################################################ # Testing # Testing NeutralLandscapes Status `/tmp/jl_AfrS7H/Project.toml` [71847384] NeutralLandscapes v0.1.5 [1bc83da4] SafeTestsets v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_AfrS7H/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.18.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.15.0 [13907d55] HaltonSequences v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.24 [71847384] NeutralLandscapes v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [1bc83da4] SafeTestsets v0.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32 Test Summary: | Pass Total Time updaters | 123 123 35.3s 35.963079 seconds (13.61 M allocations: 691.467 MiB, 1.97% gc time, 82.50% compilation time: 8% of which was recompilation) Test Summary: | Pass Total Time planar gradient | 3 3 5.6s 5.587810 seconds (3.80 M allocations: 195.828 MiB, 5.26% gc time, 99.60% compilation time) rand: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: UndefVarError: `always_false` not defined in `NeutralLandscapes` Suggestion: this global was defined as `NearestNeighbors.always_false` but not assigned a value. Stacktrace: [1] _landscape!(mat::Matrix{Float64}, alg::NeutralLandscapes.NearestNeighborElement) @ NeutralLandscapes ~/.julia/packages/NeutralLandscapes/W7lBj/src/makers/nnelement.jl:35 [2] _landscape! @ ~/.julia/packages/NeutralLandscapes/W7lBj/src/makers/discretevoronoi.jl:20 [inlined] [3] #rand!#3 @ ~/.julia/packages/NeutralLandscapes/W7lBj/src/landscape.jl:32 [inlined] [4] rand! @ ~/.julia/packages/NeutralLandscapes/W7lBj/src/landscape.jl:31 [inlined] [5] rand(alg::NeutralLandscapes.DiscreteVoronoi, dims::Tuple{Int64, Int64}; mask::Nothing) @ NeutralLandscapes ~/.julia/packages/NeutralLandscapes/W7lBj/src/landscape.jl:20 [6] rand(alg::NeutralLandscapes.DiscreteVoronoi, dims::Tuple{Int64, Int64}) @ NeutralLandscapes ~/.julia/packages/NeutralLandscapes/W7lBj/src/landscape.jl:18 [7] top-level scope @ ~/.julia/packages/NeutralLandscapes/W7lBj/test/rand.jl:48 [8] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [9] top-level scope @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:5 [10] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [11] macro expansion @ ~/.julia/packages/NeutralLandscapes/W7lBj/test/runtests.jl:5 [inlined] [12] eval(m::Module, e::Any) @ Core ./boot.jl:489 [13] macro expansion @ ~/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] [14] macro expansion @ ./timing.jl:730 [inlined] [15] top-level scope @ ~/.julia/packages/NeutralLandscapes/W7lBj/test/runtests.jl:394 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] top-level scope @ none:6 [18] eval(m::Module, e::Any) @ Core ./boot.jl:489 [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [20] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/test/rand.jl:47 Test Summary: | Pass Error Total Time rand | 10 1 11 5.8s _rescale | 1 1 0.2s RNG of the outermost testset: Random.Xoshiro(0x2c4f82b72d69e450, 0x671bafa149de2855, 0xeecd4ffd4392bf58, 0x1789cc5e11443b41, 0xb069b81fd5bfb8ce) ERROR: LoadError: Some tests did not pass: 10 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/test/runtests.jl:5 Testing failed after 62.8s ERROR: LoadError: Package NeutralLandscapes errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 210.63s: package tests unexpectedly errored