Package evaluation to test MixedAnova on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T20:53:45.704 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.74s ################################################################################ # Installation # Installing MixedAnova... Resolving package versions... Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed SnoopPrecompile ───────────── v1.0.3 Installed CodecZstd ─────────────────── v0.8.7 Installed ForwardDiff ───────────────── v1.3.0 Installed DataStructures ────────────── v0.18.22 Installed MixedAnova ────────────────── v0.5.2 Installed MixedModels ───────────────── v4.8.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed ArrowTypes ────────────────── v2.3.0 Installed InlineStrings ─────────────── v1.4.5 Installed FillArrays ────────────────── v1.15.0 Installed StringViews ───────────────── v1.3.5 Installed StatsModels ───────────────── v0.6.33 Installed GLM ───────────────────────── v1.8.3 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed ExprTools ─────────────────── v0.1.10 Installed FixedEffects ──────────────── v2.4.1 Installed StatsBase ─────────────────── v0.33.21 Installed ShiftedArrays ─────────────── v2.0.0 Installed TranscodingStreams ────────── v0.11.3 Installed TimeZones ─────────────────── v1.22.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed OrderedCollections ────────── v1.8.1 Installed Combinatorics ─────────────── v1.0.3 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed StaticArraysCore ──────────── v1.4.4 Installed SentinelArrays ────────────── v1.4.8 Installed CommonSubexpressions ──────── v0.3.1 Installed ProgressMeter ─────────────── v1.11.0 Installed StructUtils ───────────────── v2.6.0 Installed StaticArrays ──────────────── v1.9.15 Installed IrrationalConstants ───────── v0.2.6 Installed CodecBzip2 ────────────────── v0.8.5 Installed NaNMath ───────────────────── v1.1.3 Installed StringManipulation ────────── v0.4.2 Installed QuadGK ────────────────────── v2.11.2 Installed GroupedArrays ─────────────── v0.3.4 Installed JSON3 ─────────────────────── v1.14.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed FixedEffectModels ─────────── v1.8.0 Installed BitIntegers ───────────────── v0.3.5 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed Parsers ───────────────────── v2.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed JSON ──────────────────────── v1.3.0 Installed PrettyTables ──────────────── v3.1.2 Installed Distributions ─────────────── v0.25.122 Installed PtrArrays ─────────────────── v1.3.0 Installed Tables ────────────────────── v1.12.1 Installed EnumX ─────────────────────── v1.0.5 Installed Reexport ──────────────────── v1.2.2 Installed Scratch ───────────────────── v1.3.0 Installed SpecialFunctions ──────────── v2.6.1 Installed DataFrames ────────────────── v1.8.1 Installed Vcov ──────────────────────── v0.7.1 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed Preferences ───────────────── v1.5.0 Installed JLLWrappers ───────────────── v1.7.1 Installed MutableArithmetics ────────── v1.6.7 Installed BenchmarkTools ────────────── v1.6.3 Installed TableTraits ───────────────── v1.0.1 Installed TZJData ───────────────────── v1.5.0+2025b Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.35 Installed SortingAlgorithms ─────────── v1.2.2 Installed Crayons ───────────────────── v4.1.1 Installed StructTypes ───────────────── v1.11.0 Installed NLopt ─────────────────────── v0.6.5 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed Mocking ───────────────────── v0.8.1 Installed CodecLz4 ──────────────────── v0.4.6 Installed DocStringExtensions ───────── v0.9.5 Installed MathProgBase ──────────────── v0.7.8 Installed Arrow ─────────────────────── v2.8.0 Installed MathOptInterface ──────────── v1.46.0 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Lz4 239.7 KiB Installed artifact tzjdata 112.5 KiB Installed artifact Bzip2 503.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [72e9ff3b] + MixedAnova v0.5.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [c3b6d118] + BitIntegers v0.3.5 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.15.0 ⌃ [9d5cd8c9] + FixedEffectModels v1.8.0 [c8885935] + FixedEffects v2.4.1 [f6369f11] + ForwardDiff v1.3.0 ⌃ [38e38edf] + GLM v1.8.3 [6407cd72] + GroupedArrays v0.3.4 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.46.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [72e9ff3b] + MixedAnova v0.5.2 ⌅ [ff71e718] + MixedModels v4.8.2 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] + Vcov v0.7.1 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 10.25s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4697.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4506.7 ms ✓ MacroTools 1639.5 ms ✓ InlineStrings 763.6 ms ✓ Reexport 834.0 ms ✓ DataAPI 1092.7 ms ✓ Statistics 2023.2 ms ✓ IrrationalConstants 760.5 ms ✓ DataValueInterfaces 958.0 ms ✓ StaticArraysCore 868.7 ms ✓ StatsAPI 1214.3 ms ✓ OrderedCollections 840.9 ms ✓ InvertedIndices 857.6 ms ✓ ShiftedArrays 1069.4 ms ✓ DocStringExtensions 1713.4 ms ✓ ConcurrentUtilities 1909.3 ms ✓ Combinatorics 808.5 ms ✓ EnumX 1045.2 ms ✓ StringViews 830.7 ms ✓ TZJData 1939.3 ms ✓ FillArrays 813.7 ms ✓ ExprTools 2020.3 ms ✓ MathProgBase 808.2 ms ✓ PtrArrays 1256.8 ms ✓ TranscodingStreams 763.4 ms ✓ IteratorInterfaceExtensions 996.2 ms ✓ LaTeXStrings WARNING: Imported binding GMP.ispos was undeclared at import time during import to BitIntegers. 1263.3 ms ✓ BitIntegers 1363.6 ms ✓ SuiteSparse 1827.0 ms ✓ Crayons 1321.8 ms ✓ ArrowTypes 983.5 ms ✓ NaNMath 1747.9 ms ✓ ProgressMeter 2679.5 ms ✓ SentinelArrays 940.1 ms ✓ Scratch 1523.8 ms ✓ StructTypes 1419.7 ms ✓ StructUtils 1156.1 ms ✓ Compat 1242.9 ms ✓ Preferences 10424.3 ms ✓ MutableArithmetics 1678.6 ms ✓ CommonSubexpressions 894.8 ms ✓ Missings 993.7 ms ✓ PooledArrays 1260.0 ms ✓ Statistics → SparseArraysExt 968.0 ms ✓ DiffResults 1341.3 ms ✓ LogExpFunctions 1535.3 ms ✓ FillArrays → FillArraysSparseArraysExt 932.9 ms ✓ FillArrays → FillArraysStatisticsExt 914.6 ms ✓ AliasTables 1719.5 ms ✓ CodecZstd 929.7 ms ✓ CodecZlib 739.2 ms ✓ TableTraits 1922.6 ms ✓ PDMats 781.8 ms ✓ InlineStrings → ArrowTypesExt 999.0 ms ✓ Compat → CompatLinearAlgebraExt 1463.1 ms ✓ JLLWrappers 1040.8 ms ✓ SnoopPrecompile 1184.9 ms ✓ PrecompileTools 1399.9 ms ✓ GroupedArrays 1633.6 ms ✓ Tables 1399.8 ms ✓ FillArrays → FillArraysPDMatsExt 1125.7 ms ✓ Mocking 3773.2 ms ✓ DataStructures 1399.8 ms ✓ Bzip2_jll 1392.0 ms ✓ Lz4_jll 1315.7 ms ✓ NLopt_jll 1410.6 ms ✓ Rmath_jll 1356.1 ms ✓ OpenSpecFun_jll 12316.2 ms ✓ StaticArrays 2904.8 ms ✓ StringManipulation 16706.0 ms ✓ Parsers 1145.3 ms ✓ StructUtils → StructUtilsTablesExt 5685.6 ms ✓ TimeZones 1488.0 ms ✓ SortingAlgorithms 2743.7 ms ✓ QuadGK 1011.9 ms ✓ CodecBzip2 1868.6 ms ✓ CodecLz4 1452.9 ms ✓ Rmath 4767.8 ms ✓ SpecialFunctions 1338.3 ms ✓ StaticArrays → StaticArraysStatisticsExt 39641.3 ms ✓ PrettyTables 14921.3 ms ✓ JSON3 8012.6 ms ✓ JSON 1287.7 ms ✓ InlineStrings → ParsersExt 9161.0 ms ✓ StatsBase WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import.  NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Type end`.  Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. 18994.4 ms ✓ Arrow 2524.6 ms ✓ HypergeometricFunctions 1283.6 ms ✓ DiffRules 90858.8 ms ✓ DataFrames 1132.2 ms ✓ JSON3 → JSON3ArrowExt 1008.9 ms ✓ JSON → JSONArrowExt 3496.9 ms ✓ BenchmarkTools 8196.3 ms ✓ FixedEffects 14538.2 ms ✓ Vcov 2907.2 ms ✓ StatsFuns 6648.8 ms ✓ ForwardDiff 8060.0 ms ✓ StatsModels 14697.3 ms ✓ Distributions 2122.5 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 72161.8 ms ✓ MathOptInterface 13530.9 ms ✓ FixedEffectModels 9109.8 ms ✓ GLM 4023.7 ms ✓ Distributions → DistributionsTestExt 7339.1 ms ✓ NLopt  Downloading artifact: TestData  Minimizing 2 Time: 0:00:01 ( 0.55 s/it)  objective: 1790.1256369894638    Minimizing 57 Time: 0:00:01 (20.68 ms/it)  Minimizing 2 Time: 0:00:00 ( 0.15 s/it)  objective: 2380.5668557322774    Minimizing 12 Time: 0:00:00 (34.01 ms/it)  objective: 2380.54711541391    Minimizing 21 Time: 0:00:00 (24.29 ms/it)  objective: 2366.2608343868724    Minimizing 32 Time: 0:00:00 (19.31 ms/it)  objective: 2363.32932554389    Minimizing 43 Time: 0:00:00 (16.80 ms/it)  objective: 2361.85423497973    Minimizing 54 Time: 0:00:00 (15.37 ms/it)  objective: 2361.816633489017    Minimizing 65 Time: 0:00:00 (14.38 ms/it)  objective: 2361.8023305234738    Minimizing 77 Time: 0:00:01 (13.54 ms/it)  objective: 2361.7889178907567    Minimizing 89 Time: 0:00:01 (12.92 ms/it)  objective: 2361.768743283178    Minimizing 100 Time: 0:00:01 (12.52 ms/it)  objective: 2361.7532301538963    Minimizing 111 Time: 0:00:01 (12.20 ms/it)  objective: 2361.742508648016    Minimizing 122 Time: 0:00:01 (11.94 ms/it)  objective: 2361.580236945581    Minimizing 134 Time: 0:00:01 (11.69 ms/it)  objective: 2361.562079115213    Minimizing 146 Time: 0:00:01 (11.49 ms/it)  objective: 2361.5568396313583    Minimizing 157 Time: 0:00:01 (11.33 ms/it)  objective: 2361.5517654797327    Minimizing 169 Time: 0:00:01 (11.17 ms/it)  objective: 2361.5480418031584    Minimizing 181 Time: 0:00:01 (11.02 ms/it)  objective: 2361.546693860144    Minimizing 193 Time: 0:00:02 (10.90 ms/it)  objective: 2361.54621629424    Minimizing 204 Time: 0:00:02 (10.82 ms/it)  objective: 2361.5459550122855    Minimizing 216 Time: 0:00:02 (10.71 ms/it)  objective: 2361.5458565223125    Minimizing 227 Time: 0:00:02 (10.66 ms/it)  objective: 2361.545772278057    Minimizing 238 Time: 0:00:02 (10.61 ms/it)  objective: 2361.545768942214    Minimizing 250 Time: 0:00:02 (10.52 ms/it)  objective: 2361.5457686399063    Minimizing 250 Time: 0:00:02 (10.52 ms/it) 112101.6 ms ✓ MixedModels 10071.0 ms ✓ MixedAnova 104 dependencies successfully precompiled in 631 seconds. 40 already precompiled. 3 dependencies had output during precompilation: ┌ BitIntegers │ WARNING: Imported binding GMP.ispos was undeclared at import time during import to BitIntegers. └ ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ ┌ MixedModels │ Downloading artifact: TestData │ Minimizing 2 Time: 0:00:01 ( 0.55 s/it) │ objective: 1790.1256369894638  │  Minimizing 57 Time: 0:00:01 (20.68 ms/it) │ Minimizing 2 Time: 0:00:00 ( 0.15 s/it) │ objective: 2380.5668557322774  │  Minimizing 12 Time: 0:00:00 (34.01 ms/it) │ objective: 2380.54711541391  │  Minimizing 21 Time: 0:00:00 (24.29 ms/it) │ objective: 2366.2608343868724  │  Minimizing 32 Time: 0:00:00 (19.31 ms/it) │ objective: 2363.32932554389  │  Minimizing 43 Time: 0:00:00 (16.80 ms/it) │ objective: 2361.85423497973  │  Minimizing 54 Time: 0:00:00 (15.37 ms/it) │ objective: 2361.816633489017  │  Minimizing 65 Time: 0:00:00 (14.38 ms/it) │ objective: 2361.8023305234738  │  Minimizing 77 Time: 0:00:01 (13.54 ms/it) │ objective: 2361.7889178907567  │  Minimizing 89 Time: 0:00:01 (12.92 ms/it) │ objective: 2361.768743283178  │  Minimizing 100 Time: 0:00:01 (12.52 ms/it) │ objective: 2361.7532301538963  │  Minimizing 111 Time: 0:00:01 (12.20 ms/it) │ objective: 2361.742508648016  │  Minimizing 122 Time: 0:00:01 (11.94 ms/it) │ objective: 2361.580236945581  │  Minimizing 134 Time: 0:00:01 (11.69 ms/it) │ objective: 2361.562079115213  │  Minimizing 146 Time: 0:00:01 (11.49 ms/it) │ objective: 2361.5568396313583  │  Minimizing 157 Time: 0:00:01 (11.33 ms/it) │ objective: 2361.5517654797327  │  Minimizing 169 Time: 0:00:01 (11.17 ms/it) │ objective: 2361.5480418031584  │  Minimizing 181 Time: 0:00:01 (11.02 ms/it) │ objective: 2361.546693860144  │  Minimizing 193 Time: 0:00:02 (10.90 ms/it) │ objective: 2361.54621629424  │  Minimizing 204 Time: 0:00:02 (10.82 ms/it) │ objective: 2361.5459550122855  │  Minimizing 216 Time: 0:00:02 (10.71 ms/it) │ objective: 2361.5458565223125  │  Minimizing 227 Time: 0:00:02 (10.66 ms/it) │ objective: 2361.545772278057  │  Minimizing 238 Time: 0:00:02 (10.61 ms/it) │ objective: 2361.545768942214  │  Minimizing 250 Time: 0:00:02 (10.52 ms/it) │ objective: 2361.5457686399063  │  Minimizing 250 Time: 0:00:02 (10.52 ms/it) └ Precompilation completed after 638.34s ################################################################################ # Testing # Testing MixedAnova Status `/tmp/jl_kXx5ll/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.7 [a93c6f00] DataFrames v1.8.1 ⌃ [38e38edf] GLM v1.8.3 [72e9ff3b] MixedAnova v0.5.2 ⌅ [ff71e718] MixedModels v4.8.2 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_kXx5ll/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [c3b6d118] BitIntegers v0.3.5 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.7 [523fee87] CodecBzip2 v0.8.5 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 ⌃ [9d5cd8c9] FixedEffectModels v1.8.0 [c8885935] FixedEffects v2.4.1 [f6369f11] ForwardDiff v1.3.0 ⌃ [38e38edf] GLM v1.8.3 [6407cd72] GroupedArrays v0.3.4 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.46.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [72e9ff3b] MixedAnova v0.5.2 ⌅ [ff71e718] MixedModels v4.8.2 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.5 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.0 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] Vcov v0.7.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition coefnames(MixedAnova.AnovaResult{T, MixedAnova.FTest, N} where N) where {T<:(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))})} in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:3 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:12. WARNING: Method definition coefnames(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))}, Base.Val{:anova}) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:9 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:18. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition formula(StatsModels.TableRegressionModel{M, T} where T where M) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:4 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:4. WARNING: Method definition width(StatsModels.FunctionTerm{Forig, Fanon, Names} where Names where Fanon where Forig) in module StatsModels at /home/pkgeval/.julia/packages/StatsModels/fK0P3/src/terms.jl:128 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:11. WARNING: Method definition dof(FixedEffectModels.FixedEffectModel) in module FixedEffectModels at /home/pkgeval/.julia/packages/FixedEffectModels/xGOsh/src/FixedEffectModel.jl:58 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:14. ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 Simple linear regression: Test Failed at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:106 Expression: collect(coefnames(formula(lm1), Val(:anova))) == coefnames(((formula(lm1)).lhs, (formula(lm1)).rhs), Val(:anova)) Evaluated: Any["SepalLength", ["(Intercept)"]] == ["SepalLength", "(Intercept)"] Stacktrace: [1] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:80 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:81 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [5] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:106 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 Test Summary: | Pass Fail Total Time LinearModel | 21 1 22 1m54.1s Simple linear regression | 16 1 17 1m38.3s Linear regression with frequency weights | 5 5 15.6s RNG of the outermost testset: Random.Xoshiro(0x8cc83c06cf4982df, 0x362f9246007575cb, 0xe94431ee74349dbf, 0x31e56f185863730c, 0x1af1f62b80691e4f) ERROR: LoadError: Some tests did not pass: 21 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:79 Testing failed after 472.53s ERROR: LoadError: Package MixedAnova errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1163.83s: package has test failures