Package evaluation to test MetidaBioeq on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T21:10:01.241 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.2s ################################################################################ # Installation # Installing MetidaBioeq... Resolving package versions... Installed CommonWorldInvalidations ──── v1.0.0 Installed Indexing ──────────────────── v1.1.1 Installed DiffResults ───────────────── v1.1.0 Installed CodecLz4 ──────────────────── v0.4.6 Installed MacroTools ────────────────── v0.5.16 Installed ForwardDiff ───────────────── v0.10.39 Installed DataStructures ────────────── v0.19.3 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed MetidaBase ────────────────── v0.14.1 Installed CodecZstd ─────────────────── v0.8.7 Installed MixedModels ───────────────── v4.36.0 Installed GLM ───────────────────────── v1.9.0 Installed FillArrays ────────────────── v1.15.0 Installed InlineStrings ─────────────── v1.4.5 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed ArrowTypes ────────────────── v2.3.0 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed StatsModels ───────────────── v0.7.7 Installed StringViews ───────────────── v1.3.5 Installed Adapt ─────────────────────── v4.4.0 Installed AliasTables ───────────────── v1.1.3 Installed SplitApplyCombine ─────────── v1.2.3 Installed ExprTools ─────────────────── v0.1.10 Installed ConcurrentUtilities ───────── v2.5.0 Installed StatsBase ─────────────────── v0.34.8 Installed MixedModelsDatasets ───────── v0.1.2 Installed TranscodingStreams ────────── v0.11.3 Installed Optim ─────────────────────── v1.13.3 Installed TimeZones ─────────────────── v1.22.2 Installed ShiftedArrays ─────────────── v2.0.0 Installed OrderedCollections ────────── v1.8.1 Installed ArrayInterface ────────────── v7.22.0 Installed RecipesBase ───────────────── v1.3.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed CEnum ─────────────────────── v0.5.0 Installed StatsAPI ──────────────────── v1.7.1 Installed CpuId ─────────────────────── v0.3.1 Installed CommonSubexpressions ──────── v0.3.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed ProgressMeter ─────────────── v1.11.0 Installed SentinelArrays ────────────── v1.4.8 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArraysCore ──────────── v1.4.4 Installed FastGaussQuadrature ───────── v1.1.0 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed StringManipulation ────────── v0.4.2 Installed CPUSummary ────────────────── v0.2.7 Installed StaticArrays ──────────────── v1.9.15 Installed SciMLPublic ───────────────── v1.0.0 Installed MetidaBioeq ───────────────── v0.2.9 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Requires ──────────────────── v1.3.1 Installed BitIntegers ───────────────── v0.3.5 Installed MetidaNCA ─────────────────── v0.5.18 Installed JSON3 ─────────────────────── v1.14.3 Installed ArrayLayouts ──────────────── v1.12.2 Installed LogExpFunctions ───────────── v0.3.29 Installed PrettyTables ──────────────── v2.4.0 Installed DiffRules ─────────────────── v1.15.1 Installed Rmath ─────────────────────── v0.9.0 Installed IfElse ────────────────────── v0.1.1 Installed TypedTables ───────────────── v1.4.6 Installed FiniteDiff ────────────────── v2.29.0 Installed Parsers ───────────────────── v2.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed EnumX ─────────────────────── v1.0.5 Installed NLSolversBase ─────────────── v7.10.0 Installed Distributions ─────────────── v0.25.122 Installed Reexport ──────────────────── v1.2.2 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed SpecialFunctions ──────────── v2.6.1 Installed Metida ────────────────────── v0.16.4 Installed BandedMatrices ────────────── v1.10.2 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed Preferences ───────────────── v1.5.0 Installed Static ────────────────────── v1.3.1 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed DataFrames ────────────────── v1.8.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed TZJData ───────────────────── v1.5.0+2025b Installed SortingAlgorithms ─────────── v1.2.2 Installed PDMats ────────────────────── v0.11.36 Installed LineSearches ──────────────── v7.5.1 Installed NLopt ─────────────────────── v1.2.1 Installed StructTypes ───────────────── v1.11.0 Installed Crayons ───────────────────── v4.1.1 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed Dictionaries ──────────────── v0.4.5 Installed Mocking ───────────────────── v0.8.1 Installed ADTypes ───────────────────── v1.19.0 Installed CategoricalArrays ─────────── v0.10.8 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.12 Installed Arrow ─────────────────────── v2.8.0 Installed BSplineKit ────────────────── v0.19.1 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Lz4 239.7 KiB Installed artifact tzjdata 112.5 KiB Updating `~/.julia/environments/v1.14/Project.toml` [00e1d80e] + MetidaBioeq v0.2.9 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.10.2 [c3b6d118] + BitIntegers v0.3.5 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 ⌅ [324d7699] + CategoricalArrays v0.10.8 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [38e38edf] + GLM v1.9.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [a1dec852] + Metida v0.16.4 ⌅ [075456b7] + MetidaBase v0.14.1 [00e1d80e] + MetidaBioeq v0.2.9 ⌅ [097c2839] + MetidaNCA v0.5.18 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.36.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.5 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.62s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 7913.2 ms ✓ TestEnv 1 dependency successfully precompiled in 8 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4825.7 ms ✓ MacroTools 1731.6 ms ✓ InlineStrings 825.0 ms ✓ Reexport 1183.5 ms ✓ ConstructionBase 2213.5 ms ✓ IrrationalConstants 827.1 ms ✓ DataValueInterfaces 904.3 ms ✓ StatsAPI 945.4 ms ✓ CEnum 879.6 ms ✓ Indexing 1132.6 ms ✓ StringViews 1346.6 ms ✓ TranscodingStreams 959.5 ms ✓ LaTeXStrings 1156.0 ms ✓ Statistics 1011.7 ms ✓ StaticArraysCore 805.8 ms ✓ IfElse 857.1 ms ✓ PtrArrays WARNING: Imported binding GMP.ispos was undeclared at import time during import to BitIntegers. 1306.2 ms ✓ BitIntegers 1048.0 ms ✓ PositiveFactorizations 916.4 ms ✓ DataAPI 899.1 ms ✓ SciMLPublic 840.0 ms ✓ CommonWorldInvalidations 1031.1 ms ✓ InvertedIndices 896.0 ms ✓ ShiftedArrays 901.6 ms ✓ EnumX 958.4 ms ✓ TZJData 2250.1 ms ✓ FillArrays 919.9 ms ✓ ExprTools 1291.5 ms ✓ OrderedCollections 1453.6 ms ✓ ADTypes 1451.8 ms ✓ DocStringExtensions 941.2 ms ✓ IteratorInterfaceExtensions 2169.3 ms ✓ Crayons 1146.7 ms ✓ NaNMath 1360.4 ms ✓ Requires 1360.7 ms ✓ ArrowTypes 1866.2 ms ✓ ConcurrentUtilities 1228.5 ms ✓ SuiteSparse 1870.8 ms ✓ CpuId 947.8 ms ✓ Scratch 2887.6 ms ✓ SentinelArrays 1700.7 ms ✓ StructTypes 2078.2 ms ✓ ProgressMeter 1187.3 ms ✓ Compat 1271.0 ms ✓ Preferences 2171.5 ms ✓ CommonSubexpressions 863.6 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 2160.6 ms ✓ Dictionaries 1867.5 ms ✓ CodecZstd 1389.9 ms ✓ Statistics → SparseArraysExt 1063.3 ms ✓ DiffResults 1002.5 ms ✓ AliasTables 1038.2 ms ✓ Missings 1296.1 ms ✓ PooledArrays 1771.2 ms ✓ FillArrays → FillArraysSparseArraysExt 1128.1 ms ✓ FillArrays → FillArraysStatisticsExt 3756.9 ms ✓ DataStructures 827.4 ms ✓ ADTypes → ADTypesConstructionBaseExt 2114.3 ms ✓ DifferentiationInterface 1457.2 ms ✓ LogExpFunctions 966.4 ms ✓ TableTraits 1216.8 ms ✓ Adapt 825.8 ms ✓ InlineStrings → ArrowTypesExt 1918.7 ms ✓ PDMats 858.3 ms ✓ Compat → CompatLinearAlgebraExt 1144.9 ms ✓ PrecompileTools 1426.5 ms ✓ JLLWrappers 3703.3 ms ✓ Setfield 1449.4 ms ✓ SplitApplyCombine 7839.7 ms ✓ CategoricalArrays 1353.0 ms ✓ SortingAlgorithms 2289.0 ms ✓ QuadGK 1294.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1767.7 ms ✓ Tables 1178.4 ms ✓ ArrayInterface 1233.0 ms ✓ Adapt → AdaptSparseArraysExt 1404.1 ms ✓ FillArrays → FillArraysPDMatsExt 1193.0 ms ✓ Mocking 3221.3 ms ✓ StringManipulation 13638.8 ms ✓ StaticArrays 2910.4 ms ✓ RecipesBase 17093.4 ms ✓ Parsers 5596.2 ms ✓ Static 1544.7 ms ✓ Lz4_jll 1511.6 ms ✓ NLopt_jll 1622.7 ms ✓ Rmath_jll 1483.0 ms ✓ OpenSpecFun_jll 1180.5 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1024.4 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 4537.6 ms ✓ StatsBase 1766.2 ms ✓ TypedTables 803.5 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1247.8 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 5963.2 ms ✓ TimeZones 29366.3 ms ✓ PrettyTables 1549.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1452.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 23260.0 ms ✓ ArrayLayouts 1510.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1462.9 ms ✓ Adapt → AdaptStaticArraysExt 2169.6 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 14824.7 ms ✓ JSON3 1035.6 ms ✓ InlineStrings → ParsersExt 2558.4 ms ✓ CPUSummary 2025.1 ms ✓ CodecLz4 2263.5 ms ✓ NLopt 1536.4 ms ✓ Rmath 5702.7 ms ✓ SpecialFunctions 2235.0 ms ✓ PDMats → StatsBaseExt 1483.3 ms ✓ FiniteDiff 5364.7 ms ✓ TimeZones → TimeZonesRecipesBaseExt 87021.6 ms ✓ DataFrames 25345.1 ms ✓ BandedMatrices 3515.1 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 1250.6 ms ✓ JSON3 → JSON3ArrowExt WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import.  NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Type end`.  Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. 20678.0 ms ✓ Arrow 5225.8 ms ✓ FastGaussQuadrature 3035.0 ms ✓ HypergeometricFunctions 1347.4 ms ✓ DiffRules 1675.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1477.4 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1201.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5228.2 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 3947.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 3960.3 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 10455.7 ms ✓ MixedModelsDatasets 2926.4 ms ✓ StatsFuns 8248.7 ms ✓ ForwardDiff 5270.3 ms ✓ StatsModels 10266.4 ms ✓ Distributions 3865.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2851.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 8694.6 ms ✓ MetidaBase 5344.3 ms ✓ GLM 27450.6 ms ✓ BSplineKit 3228.9 ms ✓ NLSolversBase 16481.6 ms ✓ MetidaNCA  Downloading artifact: TestData 130537.2 ms ✓ MixedModels 4894.8 ms ✓ LineSearches 10734.0 ms ✓ Optim 10891.9 ms ✓ Metida 41938.3 ms ✓ MetidaBioeq 141 dependencies successfully precompiled in 751 seconds. 38 already precompiled. 3 dependencies had output during precompilation: ┌ BitIntegers │ WARNING: Imported binding GMP.ispos was undeclared at import time during import to BitIntegers. └ ┌ Arrow │ WARNING: Constructor for type "Type" was extended in `Flatbuf` without explicit qualification or import. │ NOTE: Assumed "Type" refers to `Base.Type`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Type end`. │ Hint: To silence the warning, qualify `Type` as `Base.Type` in the method signature or explicitly `import Base: Type`. └ ┌ MixedModels │ Downloading artifact: TestData └ Precompilation completed after 764.6s ################################################################################ # Testing # Testing MetidaBioeq Status `/tmp/jl_7xtL2O/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.122 [38e38edf] GLM v1.9.0 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 ⌅ [ff71e718] MixedModels v4.36.0 [2913bbd2] StatsBase v0.34.8 [3eaba693] StatsModels v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_7xtL2O/Manifest.toml` [47edcb42] ADTypes v1.19.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.1 [aae01518] BandedMatrices v1.10.2 [c3b6d118] BitIntegers v0.3.5 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.8 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [38e38edf] GLM v1.9.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.36.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 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LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X4 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Minimizing 2 Time: 0:00:00 ( 0.29 s/it) objective: 539.6041230960641   Minimizing 17 Time: 0:00:00 (42.11 ms/it) ┌ Warning: `confint(obj::LinearModel, level::Real)` is deprecated, use `confint(obj, level = level)` instead. │ caller = #confint#72 at statsmodel.jl:28 [inlined] └ @ Core ~/.julia/packages/StatsModels/5Gq5O/src/statsmodel.jl:28 ┌ Warning: Method B used, estimator changed to MixedModels.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:500 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:503 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:506 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 [ Info: Reference formulation not specified. First used: "R". [ Info: Parallel desigh used. ┌ Warning: Method not P (parallel), for parallel simple GLM model will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:426 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Design type seems fine... ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:444 ┌ Warning: Method B will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:450 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method for parallel design can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:445 ┌ Warning: Method A will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:447 [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Basic test: Test Failed at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1074 Expression: contains_warn(read(fname, String), $(Expr(:escape, Test.var"#@test_nowarn##0#@test_nowarn##1"()))) Evaluated: contains_warn("┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n", Test.var"#@test_nowarn##0#@test_nowarn##1"()) Stacktrace: [1] top-level scope @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:30 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:176 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Dropuot(s) removed! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 Test Summary: | Pass Fail Total Time Basic test | 61 1 62 5m22.7s RNG of the outermost testset: Random.Xoshiro(0xb022c6c1eb47a9d3, 0x702a2efa052b0821, 0xe5ff6857ab780bfd, 0x72cc65286d184b3e, 0xa23521814fcb0cd9) ERROR: LoadError: Some tests did not pass: 61 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:28 in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/runtests.jl:3 Testing failed after 502.9s ERROR: LoadError: Package MetidaBioeq errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1345.97s: package has test failures