Package evaluation to test MendelImpute on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-28T00:07:51.841 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.85s ################################################################################ # Installation # Installing MendelImpute... Resolving package versions... Installed libaom_jll ─────────────────────── v3.13.1+0 Installed Qt6Base_jll ────────────────────── v6.8.2+2 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Glob ───────────────────────────── v1.3.1 Installed HarfBuzz_jll ───────────────────── v8.5.1+0 Installed Libuuid_jll ────────────────────── v2.41.2+0 Installed libass_jll ─────────────────────── v0.17.4+0 Installed MultivariateStats ──────────────── v0.10.3 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Libtiff_jll ────────────────────── v4.7.2+0 Installed Cairo_jll ──────────────────────── v1.18.5+0 Installed InlineStrings ──────────────────── v1.4.5 Installed PlotThemes ─────────────────────── v3.3.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed NearestNeighbors ───────────────── v0.4.24 Installed Xorg_libXinerama_jll ───────────── v1.1.6+0 Installed Graphite2_jll ──────────────────── v1.3.15+0 Installed libinput_jll ───────────────────── v1.28.1+0 Installed CpuId ──────────────────────────── v0.3.1 Installed OrderedCollections ─────────────── v1.8.1 Installed HypothesisTests ────────────────── v0.11.6 Installed SentinelArrays ─────────────────── v1.4.8 Installed Fontconfig_jll ─────────────────── v2.17.1+0 Installed fzf_jll ────────────────────────── v0.61.1+0 Installed FileIO ─────────────────────────── v1.17.1 Installed BSON ───────────────────────────── v0.3.9 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed GroupSlices ────────────────────── v0.0.3 Installed Opus_jll ───────────────────────── v1.5.2+0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Widgets ────────────────────────── v0.6.7 Installed WoodburyMatrices ───────────────── v1.0.0 Installed NaNMath ────────────────────────── v1.1.3 Installed Tables ─────────────────────────── v1.12.1 Installed Ogg_jll ────────────────────────── v1.3.6+0 Installed Reexport ───────────────────────── v1.2.2 Installed Arpack ─────────────────────────── v0.5.4 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed LZO_jll ────────────────────────── v2.10.3+0 Installed Unzip ──────────────────────────── v0.2.0 Installed InverseFunctions ───────────────── v0.1.17 Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0 Installed LERC_jll ───────────────────────── v4.0.1+0 Installed DBInterface ────────────────────── v2.6.1 Installed FFMPEG ─────────────────────────── v0.4.5 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.3.1 Installed Preferences ────────────────────── v1.5.0 Installed TableTraits ────────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0 Installed Xorg_libICE_jll ────────────────── v1.1.2+0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed eudev_jll ──────────────────────── v3.2.14+0 Installed SortingAlgorithms ──────────────── v1.2.2 Installed Grisu ──────────────────────────── v1.0.2 Installed EpollShim_jll ──────────────────── v0.0.20230411+1 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed MacroTools ─────────────────────── v0.5.16 Installed DataStructures ─────────────────── v0.19.3 Installed URIs ───────────────────────────── v1.6.1 Installed ManualMemory ───────────────────── v0.1.8 Installed CodecZstd ──────────────────────── v0.8.7 Installed FillArrays ─────────────────────── v1.15.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0 Installed VectorizationBase ──────────────── v0.21.72 Installed UnicodeFun ─────────────────────── v0.4.1 Installed VCFTools ───────────────────────── v0.2.10 Installed x264_jll ───────────────────────── v10164.0.1+0 Installed Observables ────────────────────── v0.5.5 Installed CodecZlib ──────────────────────── v0.7.8 Installed StatsBase ──────────────────────── v0.34.8 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed ArrayInterface ─────────────────── v7.22.0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed Memento ────────────────────────── v1.4.1 Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0 Installed mtdev_jll ──────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ─────────────── v6.8.2+1 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed DataValueInterfaces ────────────── v1.0.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed LoggingExtras ──────────────────── v1.2.0 Installed Clustering ─────────────────────── v0.15.8 Installed Libffi_jll ─────────────────────── v3.4.7+0 Installed Pixman_jll ─────────────────────── v0.44.2+0 Installed StructUtils ────────────────────── v2.6.0 Installed Expat_jll ──────────────────────── v2.7.3+0 Installed IrrationalConstants ────────────── v0.2.6 Installed JLSO ───────────────────────────── v2.7.0 Installed libdecor_jll ───────────────────── v0.2.2+0 Installed Xorg_libXcursor_jll ────────────── v1.2.4+0 Installed libpng_jll ─────────────────────── v1.6.51+0 Installed Contour ────────────────────────── v0.6.3 Installed ColorVectorSpace ───────────────── v0.11.0 Installed ArrayLayouts ───────────────────── v1.12.2 Installed HTTP ───────────────────────────── v1.10.19 Installed StableRNGs ─────────────────────── v1.0.4 Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0 Installed Roots ──────────────────────────── v2.2.10 Installed Interpolations ─────────────────── v0.16.2 Installed BitFlags ───────────────────────── v0.1.9 Installed BufferedStreams ────────────────── v1.2.2 Installed FFMPEG_jll ─────────────────────── v8.0.0+0 Installed libfdk_aac_jll ─────────────────── v2.0.4+0 Installed Scratch ────────────────────────── v1.3.0 Installed SimpleBufferStream ─────────────── v1.2.0 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.36 Installed Qt6Declarative_jll ─────────────── v6.8.2+1 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.5 Installed TableOperations ────────────────── v1.2.0 Installed SQLite ─────────────────────────── v1.6.1 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed RelocatableFolders ─────────────── v1.0.1 Installed KernelDensity ──────────────────── v0.6.10 Installed Plots ──────────────────────────── v1.41.2 Installed JLFzf ──────────────────────────── v0.1.11 Installed SLEEFPirates ───────────────────── v0.6.43 Installed AliasTables ────────────────────── v1.1.3 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed RecipesBase ────────────────────── v1.3.4 Installed Combinatorics ──────────────────── v1.0.3 Installed ConcurrentUtilities ────────────── v2.5.0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed SIMD ───────────────────────────── v3.7.2 Installed Xorg_libXi_jll ─────────────────── v1.8.3+0 Installed InvertedIndices ────────────────── v1.3.1 Installed DataAPI ────────────────────────── v1.16.0 Installed libevdev_jll ───────────────────── v1.13.4+0 Installed Wayland_jll ────────────────────── v1.24.0+0 Installed Measures ───────────────────────── v0.3.3 Installed StaticArraysCore ───────────────── v1.4.4 Installed Colors ─────────────────────────── v0.13.1 Installed StaticArrays ───────────────────── v1.9.15 Installed Xorg_libxkbfile_jll ────────────── v1.1.3+0 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed AbstractFFTs ───────────────────── v1.5.0 Installed Latexify ───────────────────────── v0.16.10 Installed ColorTypes ─────────────────────── v0.12.1 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed StringManipulation ─────────────── v0.4.2 Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0 Installed SciMLPublic ────────────────────── v1.0.0 Installed Requires ───────────────────────── v1.3.1 Installed Glib_jll ───────────────────────── v2.86.0+0 Installed LogExpFunctions ────────────────── v0.3.29 Installed Vulkan_Loader_jll ──────────────── v1.3.243+0 Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0 Installed JSON ───────────────────────────── v1.3.0 Installed Parsers ────────────────────────── v2.8.3 Installed CSV ────────────────────────────── v0.10.15 Installed Distributions ──────────────────── v0.25.122 Installed Rmath ──────────────────────────── v0.9.0 Installed Arpack_jll ─────────────────────── v3.5.1+1 Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0 Installed PrettyTables ───────────────────── v3.1.2 Installed StatsPlots ─────────────────────── v0.15.8 Installed BioGenerics ────────────────────── v0.1.5 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed StatsFuns ──────────────────────── v1.5.2 Installed Xorg_xkeyboard_config_jll ──────── v2.44.0+0 Installed Xorg_libSM_jll ─────────────────── v1.2.6+0 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed x265_jll ───────────────────────── v4.1.0+0 Installed Pango_jll ──────────────────────── v1.57.0+0 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed BGZFStreams ────────────────────── v0.3.2 Installed RecipesPipeline ────────────────── v0.6.12 Installed ThreadingUtilities ─────────────── v0.5.5 Installed VariantCallFormat ──────────────── v0.5.9 Installed Accessors ──────────────────────── v0.1.42 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed GR_jll ─────────────────────────── v0.73.19+1 Installed DataFrames ─────────────────────── v1.8.1 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed FilePathsBase ──────────────────── v0.9.24 Installed Dbus_jll ───────────────────────── v1.16.2+0 Installed Adapt ──────────────────────────── v4.4.0 Installed JLD2 ───────────────────────────── v0.4.55 Installed ConstructionBase ───────────────── v1.6.0 Installed Libmount_jll ───────────────────── v2.41.2+0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ExceptionUnwrapping ────────────── v0.1.11 Installed MendelImpute ───────────────────── v1.2.6 Installed TranscodingStreams ─────────────── v0.9.13 Installed Xorg_libX11_jll ────────────────── v1.8.12+0 Installed Compat ─────────────────────────── v4.18.1 Installed PlotUtils ──────────────────────── v1.4.4 Installed LoopVectorization ──────────────── v0.12.173 Installed TensorCore ─────────────────────── v0.1.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed Statistics ─────────────────────── v1.11.1 Installed LazyArrays ─────────────────────── v1.10.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed ColorSchemes ───────────────────── v3.31.0 Installed PrecompileTools ────────────────── v1.3.3 Installed ProgressMeter ──────────────────── v1.11.0 Installed OpenSSL ────────────────────────── v1.6.0 Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0 Installed xkbcommon_jll ──────────────────── v1.13.0+0 Installed MbedTLS ────────────────────────── v1.1.9 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed GettextRuntime_jll ─────────────── v0.22.4+0 Installed Ratios ─────────────────────────── v0.4.5 Installed ChainRulesCore ─────────────────── v1.26.0 Installed GLFW_jll ───────────────────────── v3.4.0+2 Installed FriBidi_jll ────────────────────── v1.0.17+0 Installed CPUSummary ─────────────────────── v0.2.7 Installed LAME_jll ───────────────────────── v3.100.3+0 Installed MatrixFactorizations ───────────── v2.2.0 Installed Xorg_libXrender_jll ────────────── v0.9.12+0 Installed libvorbis_jll ──────────────────── v1.3.8+0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed FixedPointNumbers ──────────────── v0.8.5 Installed Showoff ────────────────────────── v1.0.3 Installed FreeType2_jll ──────────────────── v2.13.4+0 Installed SpecialFunctions ───────────────── v2.6.1 Installed FFTW ───────────────────────────── v1.10.0 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed MbedTLS_jll ────────────────────── v2.28.1010+0 Installed Xorg_libXext_jll ───────────────── v1.3.7+0 Installed SQLite_jll ─────────────────────── v3.48.0+0 Installed Xorg_libXrandr_jll ─────────────── v1.5.5+0 Installed Automa ─────────────────────────── v1.1.0 Installed Qt6Wayland_jll ─────────────────── v6.8.2+2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed SnpArrays ──────────────────────── v0.3.22 Installed BGEN ───────────────────────────── v0.1.17 Installed GR ─────────────────────────────── v0.73.19 Installing 80 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact libpng 328.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Expat 283.3 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Pixman 372.2 KiB Installed artifact Dbus 489.8 KiB Installed artifact libass 427.8 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact fzf 3.3 MiB Installed artifact Pango 2.0 MiB Installed artifact x264 2.1 MiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact GR 16.3 MiB Installed artifact libevdev 117.1 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact eudev 3.9 MiB Installed artifact xkbcommon 298.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact mtdev 79.6 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact SQLite 5.0 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Graphite2 120.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact libinput 1.0 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact Rmath 121.9 KiB Installed artifact x265 1.4 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact FFTW 2.2 MiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact Cairo 2.2 MiB Installed artifact libdecor 44.1 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Wayland 390.6 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact libvorbis 271.0 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Arpack 147.2 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Opus 925.5 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact libaom 6.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libffi 44.2 KiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Glib 7.7 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact Qt6Base 20.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [e47305d1] + MendelImpute v1.2.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [fbb218c0] + BSON v0.3.9 [47718e42] + BioGenerics v0.1.5 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [28b8d3ca] + GR v0.73.19 [c27321d9] + Glob v1.3.1 [42e2da0e] + Grisu v1.0.2 [d853e229] + GroupSlices v0.0.3 [cd3eb016] + HTTP v1.10.19 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [9da8a3cd] + JLSO v2.7.0 [682c06a0] + JSON v1.3.0 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [5078a376] + LazyArrays v1.10.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 ⌅ [a3b82374] + MatrixFactorizations v2.2.0 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [f28f55f0] + Memento v1.4.1 [e47305d1] + MendelImpute v1.2.6 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.24 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.2 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.6.1 [431bcebd] + SciMLPublic v1.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [f3b207a7] + StatsPlots v0.15.8 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InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 36.46s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4400.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4364.2 ms ✓ MacroTools 1615.2 ms ✓ InlineStrings 739.9 ms ✓ Reexport 856.8 ms ✓ TensorCore 1052.4 ms ✓ ConstructionBase 2082.6 ms ✓ IrrationalConstants 893.5 ms ✓ Measures 779.4 ms ✓ DataValueInterfaces 859.7 ms ✓ StatsAPI 2321.0 ms ✓ Format 1037.0 ms ✓ Observables 2042.3 ms ✓ Combinatorics 856.2 ms ✓ Contour 748.1 ms ✓ CommonSolve 791.2 ms ✓ LaTeXStrings 849.3 ms ✓ Glob 1163.9 ms ✓ Statistics 952.0 ms ✓ StaticArraysCore 888.3 ms ✓ StableRNGs 767.1 ms ✓ IfElse 802.0 ms ✓ PtrArrays 798.1 ms ✓ SimpleBufferStream 1171.9 ms ✓ Grisu 897.0 ms ✓ ManualMemory 857.6 ms ✓ DataAPI 946.7 ms ✓ SciMLPublic 784.6 ms ✓ CommonWorldInvalidations 1322.4 ms ✓ URIs 859.8 ms ✓ InvertedIndices 939.0 ms ✓ InverseFunctions 783.7 ms ✓ CompositionsBase 891.3 ms ✓ BitFlags 1039.6 ms ✓ AbstractFFTs 1047.6 ms ✓ WorkerUtilities 2048.0 ms ✓ FillArrays 778.9 ms ✓ UnPack 880.0 ms ✓ DBInterface 1228.0 ms ✓ OrderedCollections 981.5 ms ✓ GroupSlices 1044.5 ms ✓ DocStringExtensions 1936.5 ms ✓ BSON ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 Precompilation completed after 68.79s ################################################################################ # Testing # Testing MendelImpute Status `/tmp/jl_oTQKl3/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [6e4b80f9] BenchmarkTools v1.6.3 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [b4f34e82] Distances v0.10.12 [5789e2e9] FileIO v1.17.1 [53c48c17] FixedPointNumbers v0.8.5 [d853e229] GroupSlices v0.0.3 ⌅ [033835bb] JLD2 v0.4.55 [9da8a3cd] JLSO v2.7.0 ⌅ [5078a376] LazyArrays v1.10.0 [e47305d1] MendelImpute v1.2.6 [92933f4c] ProgressMeter v1.11.0 [4e780e97] SnpArrays v0.3.22 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.8 [f3b207a7] StatsPlots v0.15.8 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_oTQKl3/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [6db4b851] BGEN v0.1.17 [28d598bf] BGZFStreams v0.3.2 [fbb218c0] BSON v0.3.9 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [28b8d3ca] GR v0.73.19 [c27321d9] Glob v1.3.1 [42e2da0e] Grisu v1.0.2 [d853e229] GroupSlices v0.0.3 [cd3eb016] HTTP v1.10.19 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] 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Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 [ Info: Compiling VCF parser... 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SnpArrays │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_NYf4Tt" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/src/MendelImpute.jl:1 in expression starting at /home/pkgeval/.julia/packages/MendelImpute/z2M6N/test/runtests.jl:1 Testing failed after 528.28s ERROR: LoadError: Package MendelImpute errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 695.73s: package fails to precompile