Package evaluation to test MatrixLMnet on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T16:40:32.411 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.91s ################################################################################ # Installation # Installing MatrixLMnet... Resolving package versions... Installed InlineStrings ─────────────── v1.4.5 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed HypergeometricFunctions ───── v0.3.28 Installed StatsModels ───────────────── v0.7.7 Installed AliasTables ───────────────── v1.1.3 Installed DataStructures ────────────── v0.19.3 Installed StatsBase ─────────────────── v0.34.8 Installed ShiftedArrays ─────────────── v2.0.0 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Compat ────────────────────── v4.18.1 Installed InvertedIndices ───────────── v1.3.1 Installed Statistics ────────────────── v1.11.1 Installed DataValueInterfaces ───────── v1.0.0 Installed SentinelArrays ────────────── v1.4.8 Installed IrrationalConstants ───────── v0.2.6 Installed StatsAPI ──────────────────── v1.7.1 Installed StringManipulation ────────── v0.4.2 Installed PrecompileTools ───────────── v1.3.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed MatrixLMnet ───────────────── v1.1.1 Installed LogExpFunctions ───────────── v0.3.29 Installed MatrixLM ──────────────────── v0.2.3 Installed MLBase ────────────────────── v0.9.2 Installed Rmath ─────────────────────── v0.9.0 Installed Tables ────────────────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.2 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed PrettyTables ──────────────── v3.1.2 Installed PooledArrays ──────────────── v1.4.3 Installed Missings ──────────────────── v1.2.0 Installed SpecialFunctions ──────────── v2.6.1 Installed Preferences ───────────────── v1.5.0 Installed DataFrames ────────────────── v1.8.1 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed IterTools ─────────────────── v1.10.0 Installed DocStringExtensions ───────── v0.9.5 Installed SortingAlgorithms ─────────── v1.2.2 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [436227dc] + MatrixLMnet v1.1.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.5 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 [37290134] + MatrixLM v0.2.3 [436227dc] + MatrixLMnet v1.1.1 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 7.31s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4558.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1661.8 ms ✓ InlineStrings 1504.8 ms ✓ Reexport 1098.7 ms ✓ Statistics 965.1 ms ✓ DataAPI 1882.0 ms ✓ IrrationalConstants 938.1 ms ✓ DataValueInterfaces 851.7 ms ✓ StatsAPI 1179.3 ms ✓ OrderedCollections 839.7 ms ✓ InvertedIndices 1063.0 ms ✓ DocStringExtensions 1022.3 ms ✓ ShiftedArrays 1115.4 ms ✓ IterTools 787.5 ms ✓ PtrArrays 667.3 ms ✓ IteratorInterfaceExtensions 827.5 ms ✓ LaTeXStrings 1701.3 ms ✓ Crayons 2524.2 ms ✓ SentinelArrays 1043.1 ms ✓ Compat 1093.5 ms ✓ Preferences 1266.8 ms ✓ Statistics → SparseArraysExt 1070.2 ms ✓ Missings 1047.2 ms ✓ PooledArrays 3360.3 ms ✓ DataStructures 1436.8 ms ✓ LogExpFunctions 975.2 ms ✓ AliasTables 770.6 ms ✓ TableTraits 828.3 ms ✓ Compat → CompatLinearAlgebraExt 1149.6 ms ✓ JLLWrappers 945.9 ms ✓ PrecompileTools 1075.3 ms ✓ SortingAlgorithms 1809.8 ms ✓ Tables 1459.5 ms ✓ Rmath_jll 1443.2 ms ✓ OpenSpecFun_jll 3105.9 ms ✓ StringManipulation 4387.0 ms ✓ StatsBase 1438.1 ms ✓ Rmath 4864.2 ms ✓ SpecialFunctions 37268.8 ms ✓ PrettyTables 1928.1 ms ✓ MLBase 2505.3 ms ✓ HypergeometricFunctions 87062.0 ms ✓ DataFrames 2756.5 ms ✓ StatsFuns 4901.6 ms ✓ StatsModels 9095.7 ms ✓ MatrixLM 10032.8 ms ✓ MatrixLMnet 45 dependencies successfully precompiled in 211 seconds. 19 already precompiled. Precompilation completed after 224.65s ################################################################################ # Testing # Testing MatrixLMnet Status `/tmp/jl_Pp3rto/Project.toml` [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.122 [3f79f04f] Helium v0.2.1 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [189a3867] Reexport v1.2.2 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Pp3rto/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.15.0 [3f79f04f] Helium v0.2.1 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [f0e99cf1] MLBase v0.9.2 [37290134] MatrixLM v0.2.3 [436227dc] MatrixLMnet v1.1.1 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Test that original data remains unchanged test 6: Test Passed Tests mlmnet finished! CV Lasso vs Elastic Net when α=1 test 1 - ista: Test Passed CV Lasso vs Elastic Net when α=1 test 2 - fista: Test Passed CV Lasso vs Elastic Net when α=1 test 3 - fista-bt: Test Passed CV Lasso vs Elastic Net when α=1 test 4 - admm: Test Passed CV Lasso vs Elastic Net when α=1 test 5 - cd: Test Passed Tests mlmnet_cv finished! Summary cross-validation test 1 - ista: Test Passed Summary cross-validation test 2 - fista: Test Passed Summary cross-validation test 3 - fista_bt: Test Passed Summary cross-validation test 4 - admm: Test Passed Summary cross-validation test 5 - cd: Test Passed BIC validation test 1:Test Passed Criterion: 26.61961006805839 Number of iterations: 12 Criterion: 18.625904007145174 Number of iterations: 9 Criterion: 13.744251601890443 Number of iterations: 9 Adding X intercept to newPredictors. Adding Z intercept to newPredictors. Criterion: 133.9853461153782 Number of iterations: 16 Criterion: 77.64117896934785 Number of iterations: 19 Criterion: 50.598463881853284 Number of iterations: 14 Removing X intercept from newPredictors. Removing Z intercept from newPredictors. Backtransform test α=0 and λ=0 test 3-a: Test Passed Backtransform test α=0 and λ=0 test 3-b: Test Passed Backtransform test α=0 and λ=0 test 3-c: Test Passed Backtransform test α=0 and λ=0 test 3-d: Test Passed Tests utilities finished! Testing minimize_rows function: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:24 Expression: MatrixLMnet.minimize_rows([CartesianIndex(3, 5), CartesianIndex(2, 1)]) == [CartesianIndex(3, 5), CartesianIndex(2, 1)] Evaluated: CartesianIndex{2}[CartesianIndex(2, 1), CartesianIndex(3, 5)] == CartesianIndex{2}[CartesianIndex(3, 5), CartesianIndex(2, 1)] Stacktrace: [1] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:15 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:24 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Testing minimize_rows function: Test Failed at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:30 Expression: MatrixLMnet.minimize_rows([CartesianIndex(4, 3), CartesianIndex(1, 3), CartesianIndex(2, 4), CartesianIndex(3, 4)]) == [CartesianIndex(2, 4), CartesianIndex(1, 3)] Evaluated: CartesianIndex{2}[CartesianIndex(1, 3), CartesianIndex(2, 4)] == CartesianIndex{2}[CartesianIndex(2, 4), CartesianIndex(1, 3)] Stacktrace: [1] top-level scope @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:15 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/MatrixLMnet/2uUv8/test/mlmnetCV_helpersTests.jl:30 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] Test Summary: | Pass Fail Total Time MatrixLMnet | 34 2 36 2m21.8s coef and predict | 2 2 0.3s With Intercept | 4 4 4.4s Testing minimize_rows function | 4 2 6 4.7s RNG of the outermost testset: Xoshiro(0x4f6d2c5a1c192bb9, 0xd778ca733b62d95f, 0xb0cef16099a70d17, 0x34b07725c7bf1ceb, 0xbab5849f44bec3b6) ERROR: LoadError: Some tests did not pass: 34 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MatrixLMnet/2uUv8/test/runtests.jl:7 Testing failed after 226.75s ERROR: LoadError: Package MatrixLMnet errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 492.14s: package has test failures