Package evaluation to test MCPhylo on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T23:46:00.763 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.23s ################################################################################ # Installation # Installing MCPhylo... Resolving package versions... Installed libaom_jll ─────────────────────── v3.13.1+0 Installed Libuuid_jll ────────────────────── v2.41.2+0 Installed HarfBuzz_jll ───────────────────── v8.5.1+0 Installed Qt6Base_jll ────────────────────── v6.8.2+2 Installed CommonWorldInvalidations ───────── v1.0.0 Installed libass_jll ─────────────────────── v0.17.4+0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed MultivariateStats ──────────────── v0.10.3 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed Cairo_jll ──────────────────────── v1.18.5+0 Installed Libtiff_jll ────────────────────── v4.7.2+0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed PlotThemes ─────────────────────── v3.3.0 Installed OrderedCollections ─────────────── v1.8.1 Installed Functors ───────────────────────── v0.3.0 Installed NearestNeighbors ───────────────── v0.4.24 Installed Graphite2_jll ──────────────────── v1.3.15+0 Installed Xorg_libXinerama_jll ───────────── v1.1.6+0 Installed CpuId ──────────────────────────── v0.3.1 Installed libinput_jll ───────────────────── v1.28.1+0 Installed ArgCheck ───────────────────────── v2.5.0 Installed SentinelArrays ─────────────────── v1.4.8 Installed ChainRules ─────────────────────── v1.72.6 Installed Fontconfig_jll ─────────────────── v2.17.1+0 Installed fzf_jll ────────────────────────── v0.61.1+0 Installed MCPhyloTree ────────────────────── v1.1.7 Installed NaNMath ────────────────────────── v1.1.3 Installed Distances ──────────────────────── v0.10.12 Installed QuadGK ─────────────────────────── v2.11.2 Installed StaticArrayInterface ───────────── v1.8.0 Installed Widgets ────────────────────────── v0.6.7 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Opus_jll ───────────────────────── v1.5.2+0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed ScopedValues ───────────────────── v1.5.0 Installed Arpack ─────────────────────────── v0.5.4 Installed Tables ─────────────────────────── v1.12.1 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed LZO_jll ────────────────────────── v2.10.3+0 Installed Ogg_jll ────────────────────────── v1.3.6+0 Installed Reexport ───────────────────────── v1.2.2 Installed InverseFunctions ───────────────── v0.1.17 Installed Unzip ──────────────────────────── v0.2.0 Installed Preferences ────────────────────── v1.5.0 Installed MCPhylo ────────────────────────── v0.9.5 Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0 Installed LERC_jll ───────────────────────── v4.0.1+0 Installed FFMPEG ─────────────────────────── v0.4.5 Installed Missings ───────────────────────── v1.2.0 Installed Static ─────────────────────────── v1.3.1 Installed TableTraits ────────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Xorg_libICE_jll ────────────────── v1.1.2+0 Installed eudev_jll ──────────────────────── v3.2.14+0 Installed MappedArrays ───────────────────── v0.4.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed EpollShim_jll ──────────────────── v0.0.20230411+1 Installed Grisu ──────────────────────────── v1.0.2 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed Inflate ────────────────────────── v0.1.5 Installed MacroTools ─────────────────────── v0.5.16 Installed DiffResults ────────────────────── v1.1.0 Installed ManualMemory ───────────────────── v0.1.8 Installed URIs ───────────────────────────── v1.6.1 Installed AbstractTrees ──────────────────── v0.4.5 Installed DataStructures ─────────────────── v0.18.22 Installed FillArrays ─────────────────────── v1.15.0 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed UnicodeFun ─────────────────────── v0.4.1 Installed ArnoldiMethod ──────────────────── v0.1.0 Installed VectorizationBase ──────────────── v0.21.72 Installed StatsBase ──────────────────────── v0.33.21 Installed Zygote ─────────────────────────── v0.6.77 Installed x264_jll ───────────────────────── v10164.0.1+0 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed CodecZlib ──────────────────────── v0.7.8 Installed Observables ────────────────────── v0.5.5 Installed HostCPUFeatures ────────────────── v0.1.17 Installed ArrayInterface ─────────────────── v7.22.0 Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0 Installed mtdev_jll ──────────────────────── v1.1.7+0 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed Qt6ShaderTools_jll ─────────────── v6.8.2+1 Installed DataValueInterfaces ────────────── v1.0.0 Installed CEnum ──────────────────────────── v0.5.0 Installed CommonSubexpressions ───────────── v0.3.1 Installed Clustering ─────────────────────── v0.15.8 Installed LoggingExtras ──────────────────── v1.2.0 Installed Pixman_jll ─────────────────────── v0.44.2+0 Installed Libffi_jll ─────────────────────── v3.4.7+0 Installed Expat_jll ──────────────────────── v2.7.3+0 Installed RealDot ────────────────────────── v0.1.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed StructUtils ────────────────────── v2.6.0 Installed IrrationalConstants ────────────── v0.2.6 Installed libdecor_jll ───────────────────── v0.2.2+0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed Xorg_libXcursor_jll ────────────── v1.2.4+0 Installed libpng_jll ─────────────────────── v1.6.51+0 Installed ColorVectorSpace ───────────────── v0.11.0 Installed Contour ────────────────────────── v0.6.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0 Installed StableRNGs ─────────────────────── v1.0.4 Installed HTTP ───────────────────────────── v1.10.19 Installed Roots ──────────────────────────── v2.2.10 Installed BitFlags ───────────────────────── v0.1.9 Installed libfdk_aac_jll ─────────────────── v2.0.4+0 Installed FFMPEG_jll ─────────────────────── v8.0.0+0 Installed Scratch ────────────────────────── v1.3.0 Installed Interpolations ─────────────────── v0.16.2 Installed Setfield ───────────────────────── v1.1.2 Installed SimpleBufferStream ─────────────── v1.2.0 Installed PDMats ─────────────────────────── v0.11.35 Installed Qt6Declarative_jll ─────────────── v6.8.2+1 Installed TableOperations ────────────────── v1.2.0 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed RelocatableFolders ─────────────── v1.0.1 Installed CommonSolve ────────────────────── v0.2.4 Installed ForwardDiff ────────────────────── v0.10.39 Installed KernelDensity ──────────────────── v0.6.10 Installed JLFzf ──────────────────────────── v0.1.11 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed SLEEFPirates ───────────────────── v0.6.43 Installed ConcurrentUtilities ────────────── v2.5.0 Installed AliasTables ────────────────────── v1.1.3 Installed Plots ──────────────────────────── v1.41.2 Installed SparseInverseSubset ────────────── v0.1.2 Installed HashArrayMappedTries ───────────── v0.2.0 Installed Xorg_libXi_jll ─────────────────── v1.8.3+0 Installed RecipesBase ────────────────────── v1.3.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed libevdev_jll ───────────────────── v1.13.4+0 Installed DataAPI ────────────────────────── v1.16.0 Installed Wayland_jll ────────────────────── v1.24.0+0 Installed Measures ───────────────────────── v0.3.3 Installed StaticArraysCore ───────────────── v1.4.4 Installed StaticArrays ───────────────────── v1.9.15 Installed Colors ─────────────────────────── v0.13.1 Installed ReverseDiff ────────────────────── v1.16.1 Installed GPUArrays ──────────────────────── v11.3.1 Installed ColorSchemes ───────────────────── v3.31.0 Installed Xorg_libxkbfile_jll ────────────── v1.1.3+0 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed AbstractFFTs ───────────────────── v1.5.0 Installed ColorTypes ─────────────────────── v0.12.1 Installed SciMLPublic ────────────────────── v1.0.0 Installed Latexify ───────────────────────── v0.16.10 Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0 Installed Glib_jll ───────────────────────── v2.86.0+0 Installed Requires ───────────────────────── v1.3.1 Installed LLVM ───────────────────────────── v9.4.4 Installed FunctionWrappers ───────────────── v1.1.3 Installed DiffRules ──────────────────────── v1.15.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed JSON ───────────────────────────── v1.3.0 Installed Vulkan_Loader_jll ──────────────── v1.3.243+0 Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0 Installed Parsers ────────────────────────── v2.8.3 Installed Arpack_jll ─────────────────────── v3.5.1+1 Installed Distributions ──────────────────── v0.25.122 Installed FiniteDiff ─────────────────────── v2.29.0 Installed Rmath ──────────────────────────── v0.9.0 Installed StatsPlots ─────────────────────── v0.15.8 Installed UnsafeAtomics ──────────────────── v0.3.0 Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed IRTools ────────────────────────── v0.4.15 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ──────── v2.44.0+0 Installed Xorg_libSM_jll ─────────────────── v1.2.6+0 Installed JLLWrappers ────────────────────── v1.7.1 Installed ZygoteRules ────────────────────── v0.2.7 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed x265_jll ───────────────────────── v4.1.0+0 Installed Pango_jll ──────────────────────── v1.57.0+0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Bijectors ──────────────────────── v0.10.8 Installed RecipesPipeline ────────────────── v0.6.12 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed Accessors ──────────────────────── v0.1.42 Installed LightGraphs ────────────────────── v1.3.5 Installed GR_jll ─────────────────────────── v0.73.19+1 Installed LLVMExtra_jll ──────────────────── v0.0.38+0 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed Dbus_jll ───────────────────────── v1.16.2+0 Installed Libmount_jll ───────────────────── v2.41.2+0 Installed Adapt ──────────────────────────── v4.4.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ConstructionBase ───────────────── v1.6.0 Installed ExceptionUnwrapping ────────────── v0.1.11 Installed Xorg_libX11_jll ────────────────── v1.8.12+0 Installed PlotUtils ──────────────────────── v1.4.4 Installed Compat ─────────────────────────── v4.18.1 Installed TensorCore ─────────────────────── v0.1.1 Installed Statistics ─────────────────────── v1.11.1 Installed TranscodingStreams ─────────────── v0.11.3 Installed LoopVectorization ──────────────── v0.12.173 Installed StatsAPI ───────────────────────── v1.7.1 Installed StructArrays ───────────────────── v0.7.2 Installed Atomix ─────────────────────────── v1.1.2 Installed PrecompileTools ────────────────── v1.3.3 Installed ProgressMeter ──────────────────── v1.11.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed MbedTLS ────────────────────────── v1.1.9 Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0 Installed OpenSSL ────────────────────────── v1.6.0 Installed xkbcommon_jll ──────────────────── v1.13.0+0 Installed GettextRuntime_jll ─────────────── v0.22.4+0 Installed Ratios ─────────────────────────── v0.4.5 Installed FriBidi_jll ────────────────────── v1.0.17+0 Installed CPUSummary ─────────────────────── v0.2.7 Installed GLFW_jll ───────────────────────── v3.4.0+2 Installed ChainRulesCore ─────────────────── v1.26.0 Installed LAME_jll ───────────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ────────────── v0.9.12+0 Installed KernelAbstractions ─────────────── v0.9.39 Installed libvorbis_jll ──────────────────── v1.3.8+0 Installed IfElse ─────────────────────────── v0.1.1 Installed PtrArrays ──────────────────────── v1.3.0 Installed Showoff ────────────────────────── v1.0.3 Installed FixedPointNumbers ──────────────── v0.8.5 Installed FreeType2_jll ──────────────────── v2.13.4+0 Installed SpecialFunctions ───────────────── v2.6.1 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed FFTW ───────────────────────────── v1.10.0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed Xorg_libXext_jll ───────────────── v1.3.7+0 Installed MbedTLS_jll ────────────────────── v2.28.1010+0 Installed Xorg_libXrandr_jll ─────────────── v1.5.5+0 Installed Qt6Wayland_jll ─────────────────── v6.8.2+2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ChangesOfVariables ─────────────── v0.1.10 Installed GR ─────────────────────────────── v0.73.19 Installing 80 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LAME 292.5 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact libpng 328.9 KiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Expat 283.3 KiB Installed artifact Pixman 372.2 KiB Installed artifact libass 427.8 KiB Installed artifact Dbus 489.8 KiB Installed artifact Libiconv 1.9 MiB Installed artifact fzf 3.3 MiB Installed artifact Libtiff 2.3 MiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Pango 2.0 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact x264 2.1 MiB Installed artifact GR 16.3 MiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact libevdev 117.1 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact xkbcommon 298.7 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact mtdev 79.6 KiB Installed artifact Libuuid 3.7 MiB Installed artifact x265 1.4 MiB Installed artifact libinput 1.0 MiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact LLVMExtra 3.2 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact eudev 3.9 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact FFTW 2.2 MiB Installed artifact libdecor 44.1 KiB Installed artifact Cairo 2.2 MiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Wayland 390.6 KiB Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact XZ 1.5 MiB Installed artifact libvorbis 271.0 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Arpack 147.2 KiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Opus 925.5 KiB Installed artifact Glib 7.7 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Ogg 250.3 KiB Installed artifact libaom 6.4 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Qt6Base 20.6 MiB Installed artifact FFMPEG 11.7 MiB Installed artifact Qt6Declarative 21.6 MiB Updating `~/.julia/environments/v1.14/Project.toml` [af0ac7d2] + MCPhylo v0.9.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [76274a88] + Bijectors v0.10.8 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [d9f16b24] + Functors v0.3.0 [0c68f7d7] + GPUArrays v11.3.1 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.19 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [63c18a36] + KernelAbstractions v0.9.39 [5ab0869b] + KernelDensity v0.6.10 [929cbde3] + LLVM v9.4.4 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [093fc24a] + LightGraphs v1.3.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.173 [af0ac7d2] + MCPhylo v0.9.5 [e53f0ae0] + MCPhyloTree v1.1.7 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.24 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.2 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.16.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [f3b207a7] + StatsPlots v0.15.8 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.6.0 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 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[37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 34.58s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4452.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4253.4 ms ✓ MacroTools 764.7 ms ✓ Reexport 885.0 ms ✓ MappedArrays 839.0 ms ✓ TensorCore 1062.5 ms ✓ ConstructionBase 2036.2 ms ✓ IrrationalConstants 898.4 ms ✓ Measures 856.7 ms ✓ ChangesOfVariables 753.8 ms ✓ DataValueInterfaces 802.6 ms ✓ StatsAPI 2227.5 ms ✓ Format 1047.0 ms ✓ Observables 800.7 ms ✓ CEnum 971.9 ms ✓ Functors 928.4 ms ✓ Inflate 866.8 ms ✓ ArgCheck 871.8 ms ✓ Contour 749.1 ms ✓ CommonSolve 1249.5 ms ✓ TranscodingStreams 841.2 ms ✓ LaTeXStrings 1152.8 ms ✓ Statistics 1017.9 ms ✓ StaticArraysCore 904.8 ms ✓ StableRNGs 762.1 ms ✓ IfElse 835.7 ms ✓ PtrArrays 761.7 ms ✓ SimpleBufferStream 1188.5 ms ✓ Grisu 886.1 ms ✓ ManualMemory 832.1 ms ✓ DataAPI 848.5 ms ✓ SciMLPublic 755.8 ms ✓ RealDot 768.0 ms ✓ CommonWorldInvalidations 1180.7 ms ✓ URIs 3448.0 ms ✓ UnsafeAtomics 936.4 ms ✓ InverseFunctions 795.8 ms ✓ CompositionsBase 839.4 ms ✓ BitFlags 1102.3 ms ✓ AbstractTrees 1031.5 ms ✓ AbstractFFTs 2105.4 ms ✓ FillArrays 785.6 ms ✓ UnPack 1235.9 ms ✓ OrderedCollections 1442.7 ms ✓ FunctionWrappers 922.9 ms ✓ HashArrayMappedTries 1065.5 ms ✓ DocStringExtensions ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 Precompilation completed after 73.03s ################################################################################ # Testing # Testing MCPhylo Status `/tmp/jl_nd4pxP/Project.toml` ⌅ [76274a88] Bijectors v0.10.8 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [31c24e10] Distributions v0.25.122 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [615f187c] IfElse v0.1.1 [093fc24a] LightGraphs v1.3.5 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [af0ac7d2] MCPhylo v0.9.5 [e53f0ae0] MCPhyloTree v1.1.7 ⌃ [90014a1f] PDMats v0.11.35 [91a5bcdd] Plots v1.41.2 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.16.1 [992d4aef] Showoff v1.0.3 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [f3b207a7] StatsPlots v0.15.8 ⌅ [e88e6eb3] Zygote v0.6.77 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_nd4pxP/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [a9b6321e] Atomix v1.1.2 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [76274a88] Bijectors v0.10.8 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.15.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Unzip │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Unzip Failed to precompile Unzip [41fe7b60-77ed-43a1-b4f0-825fd5a5650d] to "/home/pkgeval/.julia/compiled/v1.14/Unzip/jl_gXsblu" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Plots/ywg93/src/Plots.jl:1 in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/MCPhylo.jl:1 in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:2 Testing failed after 298.8s ERROR: LoadError: Package MCPhylo errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 462.3s: package fails to precompile