Package evaluation to test Knockoffs on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T21:41:19.508 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.66s ################################################################################ # Installation # Installing Knockoffs... Resolving package versions... Installed Glob ───────────────────────────── v1.3.1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed InlineStrings ──────────────────── v1.4.5 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed NearestNeighbors ───────────────── v0.4.24 Installed SentinelArrays ─────────────────── v1.4.8 Installed CpuId ──────────────────────────── v0.3.1 Installed ElasticArrays ──────────────────── v1.2.12 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed Optim ──────────────────────────── v1.13.3 Installed NaNMath ────────────────────────── v1.1.3 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed PolynomialRoots ────────────────── v1.0.0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed FiniteDifferences ──────────────── v0.12.33 Installed Tables ─────────────────────────── v1.12.1 Installed EnumX ──────────────────────────── v1.0.5 Installed NLSolversBase ──────────────────── v7.10.0 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed TableTraits ────────────────────── v1.0.1 Installed Static ─────────────────────────── v1.3.1 Installed IterativeSolvers ───────────────── v0.9.4 Installed Preferences ────────────────────── v1.5.0 Installed Crayons ────────────────────────── v4.1.1 Installed UnPack ─────────────────────────── v1.0.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed ADTypes ────────────────────────── v1.19.0 Installed DiffResults ────────────────────── v1.1.0 Installed MacroTools ─────────────────────── v0.5.16 Installed CodecZstd ──────────────────────── v0.8.7 Installed DataStructures ─────────────────── v0.18.22 Installed ManualMemory ───────────────────── v0.1.8 Installed FillArrays ─────────────────────── v1.15.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed HostCPUFeatures ────────────────── v0.1.17 Installed DelimitedFiles ─────────────────── v1.9.1 Installed VectorizationBase ──────────────── v0.21.72 Installed ArrayInterface ─────────────────── v7.22.0 Installed StatsBase ──────────────────────── v0.33.21 Installed DataValueInterfaces ────────────── v1.0.0 Installed Richardson ─────────────────────── v1.4.2 Installed CommonSubexpressions ───────────── v0.3.1 Installed IrrationalConstants ────────────── v0.2.6 Installed LayoutPointers ─────────────────── v0.1.17 Installed StructUtils ────────────────────── v2.6.0 Installed Roots ──────────────────────────── v2.2.10 Installed BufferedStreams ────────────────── v1.2.2 Installed Setfield ───────────────────────── v1.1.2 Installed PooledArrays ───────────────────── v1.4.3 Installed PDMats ─────────────────────────── v0.11.35 Installed BenchmarkTools ─────────────────── v1.6.3 Installed Clustering ─────────────────────── v0.15.8 Installed CodecXz ────────────────────────── v0.7.4 Installed WorkerUtilities ────────────────── v1.6.1 Installed DocStringExtensions ────────────── v0.9.5 Installed CompositionsBase ───────────────── v0.1.2 Installed CommonSolve ────────────────────── v0.2.4 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed ForwardDiff ────────────────────── v1.3.0 Installed Hypatia ────────────────────────── v0.7.4 Installed StatsModels ────────────────────── v0.7.7 Installed SLEEFPirates ───────────────────── v0.6.43 Installed AliasTables ────────────────────── v1.1.3 Installed DifferentiationInterface ───────── v0.7.12 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed MathOptInterface ───────────────── v1.46.0 Installed ShiftedArrays ──────────────────── v2.0.0 Installed Combinatorics ──────────────────── v1.0.3 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed RecipesBase ────────────────────── v1.3.4 Installed SIMD ───────────────────────────── v3.7.2 Installed DataAPI ────────────────────────── v1.16.0 Installed InvertedIndices ────────────────── v1.3.1 Installed StaticArraysCore ───────────────── v1.4.4 Installed StaticArrays ───────────────────── v1.9.15 Installed SciMLPublic ────────────────────── v1.0.0 Installed StringManipulation ─────────────── v0.4.2 Installed Requires ───────────────────────── v1.3.1 Installed GenericLinearAlgebra ───────────── v0.3.19 Installed glmnet_jll ─────────────────────── v5.0.0+0 Installed LogExpFunctions ────────────────── v0.3.29 Installed DiffRules ──────────────────────── v1.15.1 Installed Knockoffs ──────────────────────── v2.0.3 Installed Parsers ────────────────────────── v2.8.3 Installed PrettyTables ───────────────────── v3.1.2 Installed JuMP ───────────────────────────── v1.29.3 Installed JSON ───────────────────────────── v1.3.0 Installed FiniteDiff ─────────────────────── v2.29.0 Installed Distributions ──────────────────── v0.25.122 Installed Rmath ──────────────────────────── v0.9.0 Installed BioGenerics ────────────────────── v0.1.5 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed BlockDiagonals ─────────────────── v0.1.42 Installed GLMNet ─────────────────────────── v0.7.0 Installed CovarianceEstimation ───────────── v0.2.13 Installed MutableArithmetics ─────────────── v1.6.7 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed BGZFStreams ────────────────────── v0.3.2 Installed StructTypes ────────────────────── v1.11.0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed VariantCallFormat ──────────────── v0.5.9 Installed FilePathsBase ──────────────────── v0.9.24 Installed Accessors ──────────────────────── v0.1.42 Installed Adapt ──────────────────────────── v4.4.0 Installed GLM ────────────────────────────── v1.9.0 Installed DataFrames ─────────────────────── v1.8.1 Installed ConstructionBase ───────────────── v1.6.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed Compat ─────────────────────────── v4.18.1 Installed TranscodingStreams ─────────────── v0.9.13 Installed LinearMaps ─────────────────────── v3.11.4 Installed TSVD ───────────────────────────── v0.4.4 Installed LoopVectorization ──────────────── v0.12.173 Installed Statistics ─────────────────────── v1.11.1 Installed PositiveFactorizations ─────────── v0.2.4 Installed StatsAPI ───────────────────────── v1.7.1 Installed ProgressMeter ──────────────────── v1.11.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed PrecompileTools ────────────────── v1.3.3 Installed CPUSummary ─────────────────────── v0.2.7 Installed IfElse ─────────────────────────── v0.1.1 Installed ChainRulesCore ─────────────────── v1.26.0 Installed JSON3 ──────────────────────────── v1.14.3 Installed PtrArrays ──────────────────────── v1.3.0 Installed SpecialFunctions ───────────────── v2.6.1 Installed LineSearches ───────────────────── v7.5.1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed Automa ─────────────────────────── v1.1.0 Installed SnpArrays ──────────────────────── v0.3.22 Installed CSV ────────────────────────────── v0.10.15 Installing 5 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Bzip2 503.5 KiB Installed artifact glmnet 154.7 KiB Installed artifact XZ 1.5 MiB Updating `~/.julia/environments/v1.14/Project.toml` [878bf26d] + Knockoffs v2.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] + BlockDiagonals v0.1.42 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [fdbdab4c] + ElasticArrays v1.2.12 [4e289a0a] + EnumX v1.0.5 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 [f6369f11] + ForwardDiff v1.3.0 [38e38edf] + GLM v1.9.0 ⌃ [8d5ece8b] + GLMNet v0.7.0 [14197337] + GenericLinearAlgebra v0.3.19 [c27321d9] + Glob v1.3.1 [3e5b6fbb] + HostCPUFeatures v0.1.17 ⌅ [b99e6be6] + Hypatia v0.7.4 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.3 [878bf26d] + Knockoffs v2.0.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.46.0 [e1d29d7a] + Missings v1.2.0 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.24 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [3a141323] + PolynomialRoots v1.0.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.0 [9449cd9e] + TSVD v0.4.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.72 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ffd25f8a] + XZ_jll v5.8.1+0 [78c6b45d] + glmnet_jll v5.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4520.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4014.6 ms ✓ MacroTools 1646.6 ms ✓ InlineStrings 793.4 ms ✓ Reexport 1088.5 ms ✓ ConstructionBase 2016.3 ms ✓ IrrationalConstants 756.9 ms ✓ DataValueInterfaces 830.8 ms ✓ StatsAPI 2743.5 ms ✓ LinearMaps 2015.0 ms ✓ Combinatorics 871.3 ms ✓ CommonSolve 818.3 ms ✓ LaTeXStrings 874.4 ms ✓ Glob 1072.1 ms ✓ Statistics 825.7 ms ✓ Richardson 933.4 ms ✓ StaticArraysCore 751.1 ms ✓ IfElse 816.1 ms ✓ PtrArrays 916.0 ms ✓ ManualMemory 920.7 ms ✓ PositiveFactorizations 839.5 ms ✓ DataAPI 905.8 ms ✓ SciMLPublic 769.8 ms ✓ CommonWorldInvalidations 848.7 ms ✓ InvertedIndices 908.9 ms ✓ InverseFunctions 851.3 ms ✓ CompositionsBase 862.2 ms ✓ ShiftedArrays 869.9 ms ✓ EnumX 994.9 ms ✓ WorkerUtilities 2024.2 ms ✓ FillArrays 803.7 ms ✓ UnPack 1277.2 ms ✓ OrderedCollections 1329.8 ms ✓ ADTypes 1071.6 ms ✓ DocStringExtensions 1559.7 ms ✓ OffsetArrays 986.2 ms ✓ PolynomialRoots 1007.6 ms ✓ BufferedStreams 742.3 ms ✓ SIMDTypes 728.7 ms ✓ IteratorInterfaceExtensions 1791.0 ms ✓ Crayons 912.2 ms ✓ DelimitedFiles 1581.3 ms ✓ GenericLinearAlgebra 1045.9 ms ✓ NaNMath 1340.7 ms ✓ Requires 1200.7 ms ✓ SuiteSparse 1748.5 ms ✓ CpuId 1403.1 ms ✓ WoodburyMatrices 2664.9 ms ✓ SentinelArrays 1464.4 ms ✓ StructTypes 1391.7 ms ✓ StructUtils 1682.9 ms ✓ ProgressMeter 1090.9 ms ✓ Compat 1156.0 ms ✓ Preferences 2243.2 ms ✓ TranscodingStreams 10756.3 ms ✓ MutableArithmetics 5208.4 ms ✓ glmnet_jll 1723.6 ms ✓ CommonSubexpressions 785.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1884.1 ms ✓ LinearMaps → LinearMapsSparseArraysExt 1230.3 ms ✓ Statistics → SparseArraysExt 1476.0 ms ✓ Distances 805.8 ms ✓ LinearMaps → LinearMapsStatisticsExt 996.5 ms ✓ DiffResults 951.9 ms ✓ AliasTables 1760.3 ms ✓ ThreadingUtilities 943.6 ms ✓ Missings 1099.0 ms ✓ PooledArrays 905.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1633.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 789.5 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1486.1 ms ✓ FillArrays → FillArraysSparseArraysExt 986.7 ms ✓ FillArrays → FillArraysStatisticsExt 769.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 1764.5 ms ✓ DifferentiationInterface 1308.9 ms ✓ LogExpFunctions 725.0 ms ✓ TableTraits 936.9 ms ✓ Adapt 1806.0 ms ✓ PDMats 867.2 ms ✓ Compat → CompatLinearAlgebraExt 875.5 ms ✓ PrecompileTools 1157.4 ms ✓ JLLWrappers 1596.7 ms ✓ BioGenerics 2458.4 ms ✓ CodecZstd 1617.0 ms ✓ CodecZlib 2885.8 ms ✓ Setfield 1300.2 ms ✓ Distances → DistancesSparseArraysExt 4899.4 ms ✓ Accessors 1289.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 822.3 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1740.5 ms ✓ Tables 1127.1 ms ✓ ArrayInterface 1225.4 ms ✓ Adapt → AdaptSparseArraysExt 825.1 ms ✓ ElasticArrays 910.1 ms ✓ TSVD 916.9 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1467.9 ms ✓ FillArrays → FillArraysPDMatsExt 2456.2 ms ✓ ChainRulesCore 1970.8 ms ✓ FilePathsBase 3694.0 ms ✓ DataStructures 3037.1 ms ✓ StringManipulation 16339.1 ms ✓ SIMD 12846.3 ms ✓ StaticArrays 2746.0 ms ✓ RecipesBase 15065.9 ms ✓ Parsers 5118.8 ms ✓ Static 1393.8 ms ✓ Bzip2_jll 1415.0 ms ✓ XZ_jll 1342.7 ms ✓ Rmath_jll 1357.0 ms ✓ OpenSpecFun_jll 1690.3 ms ✓ BGZFStreams 2120.9 ms ✓ Accessors → TestExt 2756.1 ms ✓ Accessors → LinearAlgebraExt 893.4 ms ✓ StructUtils → StructUtilsTablesExt 758.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1330.3 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1292.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 818.9 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 779.9 ms ✓ ADTypes → ADTypesChainRulesCoreExt 889.0 ms ✓ Distances → DistancesChainRulesCoreExt 850.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2911.7 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 836.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2590.0 ms ✓ FilePathsBase → FilePathsBaseTestExt 920.4 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1464.7 ms ✓ SortingAlgorithms 2642.9 ms ✓ QuadGK 37753.8 ms ✓ PrettyTables 21941.3 ms ✓ Automa 1357.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1452.7 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1392.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1414.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1479.7 ms ✓ Adapt → AdaptStaticArraysExt 1486.4 ms ✓ Accessors → StaticArraysExt 3870.0 ms ✓ IterativeSolvers 13299.4 ms ✓ JSON3 7034.6 ms ✓ JSON 926.5 ms ✓ InlineStrings → ParsersExt 910.4 ms ✓ BitTwiddlingConvenienceFunctions 2220.6 ms ✓ CPUSummary 3837.1 ms ✓ StaticArrayInterface 1709.1 ms ✓ CodecBzip2 1630.8 ms ✓ CodecXz 1442.3 ms ✓ Rmath 4838.6 ms ✓ SpecialFunctions 6476.5 ms ✓ Roots 1400.9 ms ✓ FiniteDiff 8439.5 ms ✓ StatsBase 88815.8 ms ✓ DataFrames [ Info: Compiling VCF parser... 18838.0 ms ✓ VariantCallFormat 3422.2 ms ✓ NearestNeighbors 2074.2 ms ✓ FiniteDifferences 2553.8 ms ✓ BenchmarkTools 1840.5 ms ✓ WeakRefStrings 1122.4 ms ✓ HostCPUFeatures 1249.0 ms ✓ PolyesterWeave 777.6 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1122.1 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 811.8 ms ✓ CloseOpenIntervals 924.2 ms ✓ LayoutPointers 2819.3 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2174.5 ms ✓ HypergeometricFunctions 1164.2 ms ✓ DiffRules 1048.7 ms ✓ Roots → RootsChainRulesCoreExt 1358.4 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1269.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 947.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5401.7 ms ✓ CovarianceEstimation 9019.9 ms ✓ Clustering 2122.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDifferencesExt 2900.5 ms ✓ BlockDiagonals 24738.4 ms ✓ CSV 13568.2 ms ✓ VectorizationBase 2722.0 ms ✓ StatsFuns 6653.8 ms ✓ ForwardDiff 4407.2 ms ✓ SLEEFPirates 3390.7 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 998.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 7673.8 ms ✓ StatsModels 13509.5 ms ✓ Distributions 2246.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1657.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1546.2 ms ✓ Roots → RootsForwardDiffExt 75191.6 ms ✓ MathOptInterface 39220.8 ms ✓ LoopVectorization 9175.6 ms ✓ GLM 4199.5 ms ✓ Distributions → DistributionsTestExt 4151.5 ms ✓ Distributions → DistributionsChainRulesCoreExt ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1467  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1455  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1343  [8] _include_from_serialized  @ ./loading.jl:1300 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2175  [10] _require_search_from_serialized  @ ./loading.jl:2069 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2719  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [13] macro expansion  @ ./loading.jl:2513 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [16] require  @ ./loading.jl:2453 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [27] include_string  @ ./loading.jl:3013 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ Precompilation completed after 744.23s ################################################################################ # Testing # Testing Knockoffs Status `/tmp/jl_6ttMfY/Project.toml` ⌅ [0a1fb500] BlockDiagonals v0.1.42 [336ed68f] CSV v0.10.15 [aaaa29a8] Clustering v0.15.8 [587fd27a] CovarianceEstimation v0.2.13 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [fdbdab4c] ElasticArrays v1.2.12 [38e38edf] GLM v1.9.0 ⌃ [8d5ece8b] GLMNet v0.7.0 ⌅ [b99e6be6] Hypatia v0.7.4 [4076af6c] JuMP v1.29.3 [878bf26d] Knockoffs v2.0.3 [bdcacae8] LoopVectorization v0.12.173 [429524aa] Optim v1.13.3 [85a6dd25] PositiveFactorizations v0.2.4 [92933f4c] ProgressMeter v1.11.0 [189a3867] Reexport v1.2.2 [f2b01f46] Roots v2.2.10 [4e780e97] SnpArrays v0.3.22 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [c751599d] ToeplitzMatrices v0.8.5 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_6ttMfY/Manifest.toml` [47edcb42] ADTypes v1.19.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 [28d598bf] BGZFStreams v0.3.2 [6e4b80f9] BenchmarkTools v1.6.3 [0e736298] Bessels v0.2.8 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [0a1fb500] BlockDiagonals v0.1.42 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [587fd27a] CovarianceEstimation v0.2.13 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.8.4 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [fdbdab4c] ElasticArrays v1.2.12 [4e289a0a] EnumX v1.0.5 [7a1cc6ca] FFTW v1.10.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.0 [38e38edf] GLM v1.9.0 ⌃ [8d5ece8b] GLMNet v0.7.0 [14197337] GenericLinearAlgebra v0.3.19 [c27321d9] Glob v1.3.1 [3e5b6fbb] HostCPUFeatures v0.1.17 ⌅ [b99e6be6] Hypatia v0.7.4 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.29.3 [878bf26d] Knockoffs v2.0.3 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [d3d80556] LineSearches v7.5.1 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.46.0 [e1d29d7a] Missings v1.2.0 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.24 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [1d0040c9] PolyesterWeave v0.2.2 [3a141323] PolynomialRoots v1.0.0 [f27b6e38] Polynomials v4.1.0 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [431bcebd] SciMLPublic v1.0.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.0 [9449cd9e] TSVD v0.4.4 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [c751599d] ToeplitzMatrices v0.8.5 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.72 [ea10d353] WeakRefStrings v1.4.2 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [78c6b45d] glmnet_jll v5.0.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/e80442d59af73a1877a108eb3fab2cd12d25dc56/lib/libglmnet.so" libgfortran.so.5: cannot open shared object file: No such file or directory Stacktrace:  [1] #dlopen#3  @ ./libdl.jl:120 [inlined]  [2] dlopen  @ ./libdl.jl:119 [inlined]  [3] dlopen(s::String)  @ Base.Libc.Libdl ./libdl.jl:119  [4] __init__()  @ glmnet_jll ~/.julia/packages/glmnet_jll/en9XD/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:37  [5] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1467  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1455  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1343  [8] _include_from_serialized  @ ./loading.jl:1300 [inlined]  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2175  [10] _require_search_from_serialized  @ ./loading.jl:2069 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2719  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [13] macro expansion  @ ./loading.jl:2513 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [16] require  @ ./loading.jl:2453 [inlined]  [17] eval_import_path  @ ./module.jl:36 [inlined]  [18] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [19] _eval_using  @ ./module.jl:137 [inlined]  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:3  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [27] include_string  @ ./loading.jl:3013 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [29] _start()  @ Base ./client.jl:577 during initialization of module glmnet_jll in expression starting at /home/pkgeval/.julia/packages/GLMNet/C8WKF/src/GLMNet.jl:1 in expression starting at stdin:5 ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [7] include_string  @ ./loading.jl:3013 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SnpArrays │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.14/SnpArrays/jl_ZVP9kC" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Knockoffs/Y6xoQ/src/Knockoffs.jl:1 in expression starting at /home/pkgeval/.julia/packages/Knockoffs/Y6xoQ/test/runtests.jl:1 Testing failed after 179.96s ERROR: LoadError: Package Knockoffs errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 997.79s: package requires a missing binary dependency