Package evaluation to test HighDimMixedModels on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T19:18:28.990 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.81s ################################################################################ # Installation # Installing HighDimMixedModels... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DiffResults ───────────────── v1.1.0 Installed Adapt ─────────────────────── v4.4.0 Installed GLM ───────────────────────── v1.9.0 Installed MacroTools ────────────────── v0.5.16 Installed FillArrays ────────────────── v1.15.0 Installed ForwardDiff ───────────────── v1.3.0 Installed DataStructures ────────────── v0.19.3 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed StatsModels ───────────────── v0.7.7 Installed ConstructionBase ──────────── v1.6.0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed StatsBase ─────────────────── v0.34.8 Installed Optim ─────────────────────── v1.13.3 Installed Compat ────────────────────── v4.18.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed OrderedCollections ────────── v1.8.1 Installed RecipesBase ───────────────── v1.3.4 Installed ArrayInterface ────────────── v7.22.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed PositiveFactorizations ────── v0.2.4 Installed StatsAPI ──────────────────── v1.7.1 Installed DataValueInterfaces ───────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.4 Installed CommonSubexpressions ──────── v0.3.1 Installed PrecompileTools ───────────── v1.3.3 Installed IrrationalConstants ───────── v0.2.6 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed AbstractFFTs ──────────────── v1.5.0 Installed Requires ──────────────────── v1.3.1 Installed QuadGK ────────────────────── v2.11.2 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Parameters ────────────────── v0.12.3 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed MLBase ────────────────────── v0.9.2 Installed HighDimMixedModels ────────── v0.2.2 Installed Distributions ─────────────── v0.25.122 Installed EnumX ─────────────────────── v1.0.5 Installed StatsFuns ─────────────────── v1.5.2 Installed PtrArrays ─────────────────── v1.3.0 Installed Reexport ──────────────────── v1.2.2 Installed NLSolversBase ─────────────── v7.10.0 Installed Tables ────────────────────── v1.12.1 Installed SpecialFunctions ──────────── v2.6.1 Installed Lasso ─────────────────────── v0.7.3 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Setfield ──────────────────── v1.1.2 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed FFTW ──────────────────────── v1.10.0 Installed Preferences ───────────────── v1.5.0 Installed Polynomials ───────────────── v4.1.0 Installed TableTraits ───────────────── v1.0.1 Installed PDMats ────────────────────── v0.11.36 Installed IterTools ─────────────────── v1.10.0 Installed LineSearches ──────────────── v7.5.1 Installed Bessels ───────────────────── v0.2.8 Installed SortingAlgorithms ─────────── v1.2.2 Installed UnPack ────────────────────── v1.0.2 Installed ADTypes ───────────────────── v1.19.0 Installed CategoricalArrays ─────────── v0.10.8 Installed DSP ───────────────────────── v0.8.4 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.12 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact FFTW 2.2 MiB Updating `~/.julia/environments/v1.14/Project.toml` [5d0d0550] + HighDimMixedModels v0.2.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [621f4979] + AbstractFFTs v1.5.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [0e736298] + Bessels v0.2.8 ⌅ [324d7699] + CategoricalArrays v0.10.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [717857b8] + DSP v0.8.4 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.0 [38e38edf] + GLM v1.9.0 [5d0d0550] + HighDimMixedModels v0.2.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b4fcebef] + Lasso v0.7.3 [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [f0e99cf1] + MLBase v0.9.2 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [d96e819e] + Parameters v0.12.3 [f27b6e38] + Polynomials v4.1.0 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3a884ed6] + UnPack v1.0.2 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4221.7 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3952.5 ms ✓ MacroTools 804.5 ms ✓ Reexport 945.0 ms ✓ PositiveFactorizations 837.1 ms ✓ DataAPI 1078.9 ms ✓ Statistics 1073.4 ms ✓ ConstructionBase 1921.2 ms ✓ IrrationalConstants 797.8 ms ✓ UnPack 780.2 ms ✓ DataValueInterfaces 930.5 ms ✓ StaticArraysCore 834.4 ms ✓ StatsAPI 2408.2 ms ✓ Bessels 1098.4 ms ✓ Requires 1171.4 ms ✓ OrderedCollections 1301.7 ms ✓ ADTypes 881.4 ms ✓ ShiftedArrays 1106.9 ms ✓ IterTools 1066.1 ms ✓ DocStringExtensions 1024.6 ms ✓ AbstractFFTs 857.2 ms ✓ EnumX 2109.2 ms ✓ FillArrays 821.8 ms ✓ PtrArrays 765.3 ms ✓ IteratorInterfaceExtensions 1274.7 ms ✓ SuiteSparse 1047.4 ms ✓ NaNMath 1142.9 ms ✓ Compat 1266.3 ms ✓ Preferences 1767.7 ms ✓ CommonSubexpressions 985.9 ms ✓ Missings 1331.7 ms ✓ Statistics → SparseArraysExt 796.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 880.0 ms ✓ DiffResults 1059.2 ms ✓ Adapt 1194.0 ms ✓ Parameters 3936.5 ms ✓ DataStructures 1917.3 ms ✓ DifferentiationInterface 843.2 ms ✓ ADTypes → ADTypesConstructionBaseExt 1514.9 ms ✓ LogExpFunctions 1592.4 ms ✓ FillArrays → FillArraysSparseArraysExt 970.9 ms ✓ FillArrays → FillArraysStatisticsExt 982.1 ms ✓ AliasTables 770.7 ms ✓ TableTraits 1838.2 ms ✓ PDMats 843.3 ms ✓ Compat → CompatLinearAlgebraExt 1226.6 ms ✓ JLLWrappers 925.0 ms ✓ PrecompileTools 7382.9 ms ✓ CategoricalArrays 2993.5 ms ✓ Setfield 1188.3 ms ✓ ArrayInterface 1297.2 ms ✓ Adapt → AdaptSparseArraysExt 1086.8 ms ✓ SortingAlgorithms 2667.9 ms ✓ QuadGK 1564.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 1869.8 ms ✓ Tables 1469.2 ms ✓ FillArrays → FillArraysPDMatsExt 5045.6 ms ✓ IntelOpenMP_jll 5012.8 ms ✓ oneTBB_jll 1459.6 ms ✓ FFTW_jll 1442.3 ms ✓ Rmath_jll 2147.0 ms ✓ OpenSpecFun_jll 2908.9 ms ✓ RecipesBase 788.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1396.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 4605.7 ms ✓ StatsBase  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10302.5 ms ✓ MKL_jll 1571.7 ms ✓ Rmath 4951.5 ms ✓ SpecialFunctions 38918.6 ms ✓ Polynomials 2054.2 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 1333.2 ms ✓ FiniteDiff 1941.0 ms ✓ MLBase 1433.5 ms ✓ PDMats → StatsBaseExt 6658.9 ms ✓ FFTW 2495.3 ms ✓ HypergeometricFunctions 1349.4 ms ✓ DiffRules 1301.6 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1012.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3511.2 ms ✓ Polynomials → PolynomialsFFTWExt 2905.6 ms ✓ StatsFuns 6914.0 ms ✓ ForwardDiff 6738.6 ms ✓ DSP 5132.8 ms ✓ StatsModels 9385.6 ms ✓ Distributions 1578.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 5329.7 ms ✓ GLM 2390.8 ms ✓ NLSolversBase 7808.1 ms ✓ Lasso 2578.6 ms ✓ LineSearches 6292.6 ms ✓ Optim 8986.8 ms ✓ HighDimMixedModels 90 dependencies successfully precompiled in 250 seconds. 37 already precompiled. 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 262.41s ################################################################################ # Testing # Testing HighDimMixedModels Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed VersionParsing ───── v1.3.0 Installed InvertedIndices ──── v1.3.1 Installed Conda ────────────── v1.10.3 Installed SentinelArrays ───── v1.4.8 Installed InlineStrings ────── v1.4.5 Installed WinReg ───────────── v1.0.0 Installed RCall ────────────── v0.14.10 Installed Revise ───────────── v3.12.3 Installed Compiler ─────────── v0.1.1 Installed Parsers ──────────── v2.8.3 Installed StringManipulation ─ v0.4.2 Installed CodeTracking ─────── v3.0.0 Installed LoweredCodeUtils ─── v3.5.0 Installed JuliaInterpreter ─── v0.10.8 Installed JSON ─────────────── v0.21.4 Installed PooledArrays ─────── v1.4.3 Installed LaTeXStrings ─────── v1.4.0 Installed Crayons ──────────── v4.1.1 Installed PrettyTables ─────── v3.1.2 Installed DataFrames ───────── v1.8.1 Updating `/tmp/jl_3JSwfh/Project.toml` [31c24e10] ↑ Distributions v0.25.112 ⇒ v0.25.122 [5d0d0550] + HighDimMixedModels v0.2.2 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [b4fcebef] ↑ Lasso v0.7.2 ⇒ v0.7.3 [429524aa] ↑ Optim v1.9.4 ⇒ v1.13.3 [6f49c342] ↑ RCall v0.14.6 ⇒ v0.14.10 [295af30f] ↑ Revise v3.6.2 ⇒ v3.12.3 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.8 [37e2e46d] ↑ LinearAlgebra v1.11.0 ⇒ v1.13.0 Updating `/tmp/jl_3JSwfh/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [79e6a3ab] ↑ Adapt v4.1.1 ⇒ v4.4.0 [4fba245c] ↑ ArrayInterface v7.16.0 ⇒ v7.22.0 [0e736298] + Bessels v0.2.8 [da1fd8a2] ↑ CodeTracking v1.3.6 ⇒ v3.0.0 [34da2185] ↑ Compat v4.16.0 ⇒ v4.18.1 [807dbc54] + Compiler v0.1.1 [8f4d0f93] ↑ Conda v1.10.2 ⇒ v1.10.3 [187b0558] ↑ ConstructionBase v1.5.8 ⇒ v1.6.0 [717857b8] ↑ DSP v0.7.10 ⇒ v0.8.4 [a93c6f00] ↑ DataFrames v1.7.0 ⇒ v1.8.1 [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.19.3 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] ↑ Distributions v0.25.112 ⇒ v0.25.122 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [4e289a0a] + EnumX v1.0.5 [7a1cc6ca] ↑ FFTW v1.8.0 ⇒ v1.10.0 [1a297f60] ↑ FillArrays v1.13.0 ⇒ v1.15.0 [6a86dc24] ↑ FiniteDiff v2.26.0 ⇒ v2.29.0 [f6369f11] ↑ ForwardDiff v0.10.36 ⇒ v1.3.0 [5d0d0550] + HighDimMixedModels v0.2.2 [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28 [842dd82b] ↑ InlineStrings v1.4.2 ⇒ v1.4.5 [41ab1584] ↑ InvertedIndices v1.3.0 ⇒ v1.3.1 [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.6 [692b3bcd] ↑ JLLWrappers v1.6.1 ⇒ v1.7.1 [aa1ae85d] ↑ JuliaInterpreter v0.9.36 ⇒ v0.10.8 [b4fcebef] ↑ Lasso v0.7.2 ⇒ v0.7.3 [d3d80556] ↑ LineSearches v7.3.0 ⇒ v7.5.1 [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29 [6f1432cf] ↑ LoweredCodeUtils v3.0.5 ⇒ v3.5.0 [1914dd2f] ↑ MacroTools v0.5.13 ⇒ v0.5.16 [d41bc354] ↑ NLSolversBase v7.8.3 ⇒ v7.10.0 [77ba4419] ↑ NaNMath v1.0.2 ⇒ v1.1.3 [429524aa] ↑ Optim v1.9.4 ⇒ v1.13.3 [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1 [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.36 [69de0a69] ↑ Parsers v2.8.1 ⇒ v2.8.3 [f27b6e38] ↑ Polynomials v4.0.11 ⇒ v4.1.0 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.0 [08abe8d2] ↑ PrettyTables v2.4.0 ⇒ v3.1.2 [43287f4e] ↑ PtrArrays v1.2.1 ⇒ v1.3.0 [1fd47b50] ↑ QuadGK v2.11.1 ⇒ v2.11.2 [6f49c342] ↑ RCall v0.14.6 ⇒ v0.14.10 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [295af30f] ↑ Revise v3.6.2 ⇒ v3.12.3 [79098fc4] ↑ Rmath v0.8.0 ⇒ v0.9.0 [91c51154] ↑ SentinelArrays v1.4.6 ⇒ v1.4.8 [efcf1570] ↑ Setfield v1.1.1 ⇒ v1.1.2 [a2af1166] ↑ SortingAlgorithms v1.2.1 ⇒ v1.2.2 [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.6.1 [1e83bf80] ↑ StaticArraysCore v1.4.3 ⇒ v1.4.4 [82ae8749] ↑ StatsAPI v1.7.0 ⇒ v1.7.1 [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.8 [4c63d2b9] ↑ StatsFuns v1.3.2 ⇒ v1.5.2 [3eaba693] ↑ StatsModels v0.7.4 ⇒ v0.7.7 [892a3eda] ↑ StringManipulation v0.4.0 ⇒ v0.4.2 [bd369af6] ↑ Tables v1.12.0 ⇒ v1.12.1 [f5851436] ↑ FFTW_jll v3.3.10+1 ⇒ v3.3.11+0 [1d5cc7b8] ↑ IntelOpenMP_jll v2024.2.1+0 ⇒ v2025.2.0+0 [856f044c] ↑ MKL_jll v2024.2.0+0 ⇒ v2025.2.0+0 [c8ffd9c3] - MbedTLS_jll v2.28.6+0 [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0 [1317d2d5] ↑ oneTBB_jll v2021.12.0+0 ⇒ v2022.0.0+1 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [37e2e46d] ↑ LinearAlgebra v1.11.0 ⇒ v1.13.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.11.0 ⇒ v1.13.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [2f01184e] ↑ SparseArrays v1.11.0 ⇒ v1.13.0 [f489334b] ↑ StyledStrings v1.11.0 ⇒ v1.13.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.6.0+0 ⇒ v8.17.0+0 [e37daf67] ↑ LibGit2_jll v1.7.2+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.12.12 ⇒ v2025.11.4 [4536629a] ↑ OpenBLAS_jll v0.3.27+1 ⇒ v0.3.29+0 [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.7.0+0 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.11.0+0 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.59.0+0 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/774a8a3dc0fe4b06c576adba8b21035f557bb53b/build.log` Test Successfully re-resolved Status `/tmp/jl_3JSwfh/Project.toml` [31c24e10] Distributions v0.25.122 [5d0d0550] HighDimMixedModels v0.2.2 [41ab1584] InvertedIndices v1.3.1 [b4fcebef] Lasso v0.7.3 [f0e99cf1] MLBase v0.9.2 [429524aa] Optim v1.13.3 [d96e819e] Parameters v0.12.3 [6f49c342] RCall v0.14.10 [295af30f] Revise v3.12.3 [2913bbd2] StatsBase v0.34.8 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_3JSwfh/Manifest.toml` [47edcb42] ADTypes v1.19.0 [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [0e736298] Bessels v0.2.8 ⌅ [324d7699] CategoricalArrays v0.10.8 [da1fd8a2] CodeTracking v3.0.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [717857b8] DSP v0.8.4 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.0 [38e38edf] GLM v1.9.0 [5d0d0550] HighDimMixedModels v0.2.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌃ [682c06a0] JSON v0.21.4 [aa1ae85d] JuliaInterpreter v0.10.8 [b964fa9f] LaTeXStrings v1.4.0 [b4fcebef] Lasso v0.7.3 [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.5.0 [f0e99cf1] MLBase v0.9.2 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [f27b6e38] Polynomials v4.1.0 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.2 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [6f49c342] RCall v0.14.10 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [295af30f] Revise v3.12.3 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3a884ed6] UnPack v1.0.2 [81def892] VersionParsing v1.3.0 [1b915085] WinReg v1.0.0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: REvalError: Error in library(splmm) : there is no package called ‘splmm’ Stacktrace: [1] handle_eval_stderr(; as_warning::Bool) @ RCall ~/.julia/packages/RCall/HIJsY/src/io.jl:173 [2] handle_eval_stderr @ ~/.julia/packages/RCall/HIJsY/src/io.jl:167 [inlined] [3] reval_p(expr::Ptr{LangSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:103 [4] reval_p(expr::Ptr{RCall.ExprSxp}, env::Ptr{EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:119 [5] reval(str::String, env::RObject{EnvSxp}) @ RCall ~/.julia/packages/RCall/HIJsY/src/eval.jl:136 [6] top-level scope @ ~/.julia/packages/HighDimMixedModels/Rm0ib/test/runtests.jl:74 [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] top-level scope @ none:6 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [11] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/HighDimMixedModels/Rm0ib/test/runtests.jl:23 Testing failed after 348.63s ERROR: LoadError: Package HighDimMixedModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 661.82s: package tests unexpectedly errored