Package evaluation to test HDF5 on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T15:11:31.843 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.89s ################################################################################ # Installation # Installing HDF5... Resolving package versions... Installed MicrosoftMPI_jll ────── v10.1.4+3 Installed MPICH_jll ───────────── v4.3.2+0 Installed Compat ──────────────── v4.18.1 Installed libaec_jll ──────────── v1.1.4+0 Installed Xorg_libpciaccess_jll ─ v0.18.1+0 Installed OpenMPI_jll ─────────── v5.0.9+0 Installed HDF5_jll ────────────── v1.14.6+0 Installed Requires ────────────── v1.3.1 Installed Hwloc_jll ───────────── v2.12.2+0 Installed XML2_jll ────────────── v2.13.9+0 Installed MPIPreferences ──────── v0.1.11 Installed Libiconv_jll ────────── v1.18.0+0 Installed MPItrampoline_jll ───── v5.5.4+0 Installed JLLWrappers ─────────── v1.7.1 Installed Preferences ─────────── v1.5.0 Installed HDF5 ────────────────── v0.17.2 Installing 7 artifacts Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact libaec 49.6 KiB Installed artifact XML2 2.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Hwloc 3.5 MiB Installed artifact MPICH 3.3 MiB Installed artifact HDF5 5.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [f67ccb44] + HDF5 v0.17.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [f67ccb44] + HDF5 v0.17.2 [692b3bcd] + JLLWrappers v1.7.1 [3da0fdf6] + MPIPreferences v0.1.11 [21216c6a] + Preferences v1.5.0 [ae029012] + Requires v1.3.1 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 13.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4500.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 1329.5 ms ✓ Requires 1241.2 ms ✓ Compat 1300.8 ms ✓ Preferences 913.5 ms ✓ Compat → CompatLinearAlgebraExt 1229.1 ms ✓ JLLWrappers 1512.5 ms ✓ MPIPreferences 1474.3 ms ✓ libaec_jll 1487.1 ms ✓ Xorg_libpciaccess_jll 1421.7 ms ✓ Libiconv_jll 1255.0 ms ✓ MicrosoftMPI_jll 4170.6 ms ✓ MPItrampoline_jll 1525.4 ms ✓ XML2_jll 1498.3 ms ✓ Hwloc_jll 4513.2 ms ✓ MPICH_jll 4153.8 ms ✓ OpenMPI_jll 5195.0 ms ✓ HDF5_jll 13399.7 ms ✓ HDF5 17 dependencies successfully precompiled in 48 seconds. 29 already precompiled. Precompilation completed after 66.82s ################################################################################ # Testing # Testing HDF5 Status `/tmp/jl_qqan5Z/Project.toml` [34da2185] Compat v4.18.1 [5789e2e9] FileIO v1.17.1 [f67ccb44] HDF5 v0.17.2 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [21216c6a] Preferences v1.5.0 [ae029012] Requires v1.3.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [8bf52ea8] CRC32c v1.11.0 [8ba89e20] Distributed v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_qqan5Z/Manifest.toml` [34da2185] Compat v4.18.1 [ffbed154] DocStringExtensions v0.9.5 [5789e2e9] FileIO v1.17.1 [f67ccb44] HDF5 v0.17.2 [692b3bcd] JLLWrappers v1.7.1 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [bac558e1] OrderedCollections v1.8.1 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [ae029012] Requires v1.3.1 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.2+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] libaec_jll v1.1.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Installed Bzip2_jll ────────── v1.0.9+0 Installed Blosc_jll ────────── v1.21.7+0 Installed Blosc ────────────── v0.7.3 Installed CodecBzip2 ───────── v0.7.2 Installed CEnum ────────────── v0.4.2 Installed CodecZstd ────────── v0.7.2 Installed TranscodingStreams ─ v0.9.13 Installed Lz4_jll ──────────── v1.10.1+0 Installed CodecLz4 ─────────── v0.4.6 Installing 3 artifacts Installed artifact Blosc 44.2 KiB Installed artifact Lz4 239.7 KiB Installed artifact Bzip2 503.5 KiB Updating `/tmp/jl_qqan5Z/Project.toml` [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zzstd` Updating `/tmp/jl_qqan5Z/Manifest.toml` [a74b3585] + Blosc v0.7.3 ⌅ [fa961155] + CEnum v0.4.2 ⌅ [523fee87] + CodecBzip2 v0.7.2 [5ba52731] + CodecLz4 v0.4.6 ⌅ [6b39b394] + CodecZstd v0.7.2 [c8ec2601] + H5Zblosc v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zblosc` [094576f2] + H5Zbzip2 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zbzip2` [eb20ec05] + H5Zlz4 v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zlz4` [f6f2d980] + H5Zzstd v0.1.1 `~/.julia/packages/HDF5/Z859u/filters/H5Zzstd` ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Resolving package versions... Installed bitshuffle_jll ─ v0.4.2+0 Installing 1 artifacts Installed artifact bitshuffle 14.9 KiB Updating `/tmp/jl_qqan5Z/Project.toml` [51b4e782] + H5Zbitshuffle v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zbitshuffle` Updating `/tmp/jl_qqan5Z/Manifest.toml` [51b4e782] + H5Zbitshuffle v0.1.2 `~/.julia/packages/HDF5/Z859u/filters/H5Zbitshuffle` ⌅ [228fe19c] + bitshuffle_jll v0.4.2+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` [ Info: libhdf5 v1.14.6 ┌ Warning: `filter=(307, 0)` keyword option is deprecated, use `filters=(307, 0)` instead │ caller = setproperty!(p::HDF5.DatasetCreateProperties, name::Symbol, val::Tuple{Int32, Int64}) at properties.jl:59 └ @ Core ~/.julia/packages/HDF5/Z859u/src/properties.jl:59 ┌ Warning: `append!(filters::Filters.FilterPipeline, extra::NTuple{N, Integer}) where N` is deprecated, use `append!(filters, [ExternalFilter(extra...)])` instead. │ caller = set_filters! at properties.jl:499 [inlined] └ @ Core ~/.julia/packages/HDF5/Z859u/src/properties.jl:499 Object API: Test Failed at /home/pkgeval/.julia/packages/HDF5/Z859u/test/objects.jl:19 Expression: API.h5o_exists_by_name(h5f, "noonian") Expected: HDF5.API.H5Error No exception thrown Stacktrace: [1] do_test_throws @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:910 [inlined] [2] (::var"#366#367")(h5f::HDF5.File) @ Main ~/.julia/packages/HDF5/Z859u/test/objects.jl:19 [3] (::HDF5.var"#21#22"{HDF5.HDF5Context, @Kwargs{}, var"#366#367", HDF5.File})() @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:101 [4] task_local_storage(body::HDF5.var"#21#22"{HDF5.HDF5Context, @Kwargs{}, var"#366#367", HDF5.File}, key::Symbol, val::HDF5.HDF5Context) @ Base ./task.jl:298 [5] h5open(::var"#366#367", ::String, ::Vararg{String}; context::HDF5.HDF5Context, pv::@Kwargs{}) @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:96 [6] h5open(::Function, ::String, ::String) @ HDF5 ~/.julia/packages/HDF5/Z859u/src/file.jl:94 [7] top-level scope @ ~/.julia/packages/HDF5/Z859u/test/objects.jl:6 [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [9] macro expansion @ ~/.julia/packages/HDF5/Z859u/test/objects.jl:16 [inlined] Test Summary: | Pass Fail Broken Total Time HDF5.jl | 1563 1 3 1567 5m55.7s plain | 151 1 152 58.3s complex | 13 13 5.1s undefined and null | 4 4 0.0s abstract arrays | 2 2 1.6s empty and 0-size arrays | 39 39 2.1s generic read of native types | 17 17 1.5s show | 51 51 10.1s split1 | 13 13 0.4s haskey | 18 18 1.0s AbstractString | 51 51 7.6s opaque data | 7 7 2.7s FixedStrings and FixedArrays | 18 18 3.0s Object Exists | 8 8 0.2s HDF5 existance | 4 4 0.1s bounds | 2 2 0.3s create_dataset | 352 352 3.3s Strings | 8 8 2.5s h5a_iterate | 8 8 0.4s h5l_iterate | 8 8 0.4s h5dchunk_iter | 3 3 0.0s compound | 10 10 8.6s create_dataset (compound) | 4 4 1.5s write_compound | 27 27 5.4s custom | 6 6 2.0s reference | 6 6 0.8s Dataspaces | 95 95 1.2s Datatypes | 15 15 0.2s BlockRange | 35 35 0.5s hyperslab | 5 5 2.8s read 0-length arrays: issue #859 | 0 0.6s attrs interface | 92 92 5.8s variable length strings | 1 1 0.2s readremote | 23 23 6.4s extend | 29 29 5.2s gc | 101 101 11.2s external | 6 6 0.1s swmr | 4 4 15.9s mmap | 9 9 2.9s properties | 46 1 47 3.2s filter | 81 81 22.6s Raw Chunk I/O | 80 80 12.4s fileio | 6 6 5.4s track order | 18 18 4.6s h5f_get_dset_no_attrs_hint | 6 6 0.6s non-allocating methods | 11 1 12 2.3s Compression Filter Unit Tests | 6 6 0.1s Object API | 37 1 38 5.2s virtual dataset | 5 5 1.6s mpio | 12 12 5.5s ros3 | 2 2 2.4s RNG of the outermost testset: Xoshiro(0x1d6ace0ae77fe726, 0x4977d48757719041, 0x95d7d76b6cd52634, 0x08a05900ee05af2a, 0x236befc090262113) ERROR: LoadError: Some tests did not pass: 1563 passed, 1 failed, 0 errored, 3 broken. in expression starting at /home/pkgeval/.julia/packages/HDF5/Z859u/test/runtests.jl:34 Testing failed after 402.92s ERROR: LoadError: Package HDF5 errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 526.36s: package has test failures