Package evaluation to test GraphDynamicalSystems on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T20:39:44.743 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.83s ################################################################################ # Installation # Installing GraphDynamicalSystems... Resolving package versions... Installed ChunkCodecLibZstd ──────────────── v1.0.0 Installed CompositionsBase ───────────────── v0.1.2 Installed Accessors ──────────────────────── v0.1.42 Installed MacroTools ─────────────────────── v0.5.16 Installed CommonSolve ────────────────────── v0.2.4 Installed ForwardDiff ────────────────────── v1.3.0 Installed DataStructures ─────────────────── v0.19.3 Installed HerbInterpret ──────────────────── v0.2.1 Installed CommonWorldInvalidations ───────── v1.0.0 Installed HerbGrammar ────────────────────── v0.6.2 Installed DiffResults ────────────────────── v1.1.0 Installed ManualMemory ───────────────────── v0.1.8 Installed SimpleUnPack ───────────────────── v1.1.0 Installed AbstractTrees ──────────────────── v0.4.5 Installed FillArrays ─────────────────────── v1.15.0 Installed Adapt ──────────────────────────── v4.4.0 Installed JLD2 ───────────────────────────── v0.6.3 Installed ConstructionBase ───────────────── v1.6.0 Installed MetaGraphsNext ─────────────────── v0.7.4 Installed RuntimeGeneratedFunctions ──────── v0.5.16 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed FastPower ──────────────────────── v1.2.0 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed AliasTables ────────────────────── v1.1.3 Installed StatsBase ──────────────────────── v0.34.8 Installed HashArrayMappedTries ───────────── v0.2.0 Installed ExprTools ──────────────────────── v0.1.10 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed NearestNeighbors ───────────────── v0.4.24 Installed ArrayInterface ─────────────────── v7.22.0 Installed Compat ─────────────────────────── v4.18.1 Installed SymbolicIndexingInterface ──────── v0.3.46 Installed RecipesBase ────────────────────── v1.3.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed DataAPI ────────────────────────── v1.16.0 Installed StrideArraysCore ───────────────── v0.5.8 Installed Statistics ─────────────────────── v1.11.1 Installed PreallocationTools ─────────────── v0.4.34 Installed SciMLOperators ─────────────────── v1.13.0 Installed PrecompileTools ────────────────── v1.3.3 Installed EnzymeCore ─────────────────────── v0.8.17 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed CpuId ──────────────────────────── v0.3.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed TimerOutputs ───────────────────── v0.5.29 Installed ExproniconLite ─────────────────── v0.10.14 Installed DynamicalSystemsBase ───────────── v3.15.2 Installed CommonSubexpressions ───────────── v0.3.1 Installed LoggingExtras ──────────────────── v1.2.0 Installed SciMLStructures ────────────────── v1.7.0 Installed FileIO ─────────────────────────── v1.17.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed ConcreteStructs ────────────────── v0.2.3 Installed StaticArrays ───────────────────── v1.9.15 Installed StaticArraysCore ───────────────── v1.4.4 Installed GPUArraysCore ──────────────────── v0.2.0 Installed StructUtils ────────────────────── v2.6.0 Installed TruncatedStacktraces ───────────── v1.4.0 Installed IrrationalConstants ────────────── v0.2.6 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.8.0 Installed CPUSummary ─────────────────────── v0.2.7 Installed HerbSpecification ──────────────── v0.2.1 Installed SciMLPublic ────────────────────── v1.0.0 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed FunctionWrappers ───────────────── v1.1.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed NaNMath ────────────────────────── v1.1.3 Installed Requires ───────────────────────── v1.3.1 Installed ChunkCodecLibZlib ──────────────── v1.0.0 Installed DiffRules ──────────────────────── v1.15.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed HerbSearch ─────────────────────── v0.4.9 Installed SciMLBase ──────────────────────── v2.127.0 Installed Roots ──────────────────────────── v2.2.10 Installed HerbConstraints ────────────────── v0.4.8 Installed GraphDynamicalSystems ──────────── v0.0.6 Installed FastBroadcast ──────────────────── v0.3.5 Installed JSON ───────────────────────────── v1.3.0 Installed OrdinaryDiffEqCore ─────────────── v1.36.0 Installed FastClosures ───────────────────── v0.3.2 Installed AutoHashEquals ─────────────────── v2.2.0 Installed ScopedValues ───────────────────── v1.5.0 Installed Neighborhood ───────────────────── v0.2.4 Installed Parsers ────────────────────────── v2.8.3 Installed IfElse ─────────────────────────── v0.1.1 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed Polyester ──────────────────────── v0.7.18 Installed PtrArrays ──────────────────────── v1.3.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed SciMLLogging ───────────────────── v1.5.0 Installed Reexport ───────────────────────── v1.2.2 Installed EnumX ──────────────────────────── v1.0.5 Installed InverseFunctions ───────────────── v0.1.17 Installed DiffEqBase ─────────────────────── v6.192.0 Installed SpecialFunctions ───────────────── v2.6.1 Installed Jieko ──────────────────────────── v0.2.1 Installed Missings ───────────────────────── v1.2.0 Installed JLLWrappers ────────────────────── v1.7.1 Installed Setfield ───────────────────────── v1.1.2 Installed Static ─────────────────────────── v1.3.1 Installed Preferences ────────────────────── v1.5.0 Installed OrdinaryDiffEqTsit5 ────────────── v1.5.0 Installed ChunkCodecCore ─────────────────── v1.0.0 Installed SortingAlgorithms ──────────────── v1.2.2 Installed ThreadingUtilities ─────────────── v0.5.5 Installed RecursiveArrayTools ────────────── v3.39.0 Installed Moshi ──────────────────────────── v0.3.7 Installed PolyesterWeave ─────────────────── v0.2.2 Installed MLStyle ────────────────────────── v0.4.17 Installed ADTypes ────────────────────────── v1.19.0 Installed DocStringExtensions ────────────── v0.9.5 Installed Inflate ────────────────────────── v0.1.5 Installed StateSpaceSets ─────────────────── v2.5.3 Installed HerbCore ───────────────────────── v0.3.12 Installed Graphs ─────────────────────────── v1.13.1 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [13529e2e] + GraphDynamicalSystems v0.0.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [15f4f7f2] + AutoHashEquals v2.2.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] + CPUSummary v0.2.7 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [2b5f629d] + DiffEqBase v6.192.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [6e36e845] + DynamicalSystemsBase v3.15.2 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.15.0 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [13529e2e] + GraphDynamicalSystems v0.0.6 [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [1fa96474] + HerbConstraints v0.4.8 [2b23ba43] + HerbCore v0.3.12 [4ef9e186] + HerbGrammar v0.6.2 [5bbddadd] + HerbInterpret v0.2.1 [3008d8e8] + HerbSearch v0.4.9 [6d54aada] + HerbSpecification v0.2.1 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [ae98c720] + Jieko v0.2.1 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [fa8bd995] + MetaGraphsNext v0.7.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.24 [645ca80c] + Neighborhood v0.2.4 [bac558e1] + OrderedCollections v1.8.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [69de0a69] + Parsers v2.8.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.127.0 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [40b095a5] + StateSpaceSets v2.5.3 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [7792a7ef] + StrideArraysCore v0.5.8 [ec057cc2] + StructUtils v2.6.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 10.67s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4615.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4403.0 ms ✓ MacroTools 776.2 ms ✓ Reexport 1199.3 ms ✓ ConstructionBase 2010.0 ms ✓ IrrationalConstants 809.2 ms ✓ StatsAPI 951.2 ms ✓ Inflate 677.8 ms ✓ CommonSolve 845.4 ms ✓ ChunkCodecCore 1656.4 ms ✓ Statistics 1007.7 ms ✓ StaticArraysCore 1278.3 ms ✓ EnzymeCore 774.1 ms ✓ IfElse 946.6 ms ✓ AutoHashEquals 804.9 ms ✓ PtrArrays 895.7 ms ✓ ManualMemory 829.2 ms ✓ DataAPI 824.2 ms ✓ SciMLPublic 3755.5 ms ✓ ExproniconLite 775.0 ms ✓ CommonWorldInvalidations 790.3 ms ✓ FastPower 25313.8 ms ✓ MLStyle 934.0 ms ✓ InverseFunctions 855.4 ms ✓ CompositionsBase 1150.2 ms ✓ AbstractTrees 862.7 ms ✓ SimpleUnPack 837.8 ms ✓ MuladdMacro 874.8 ms ✓ EnumX 2069.3 ms ✓ FillArrays 867.1 ms ✓ ExprTools 781.0 ms ✓ ConcreteStructs 1220.8 ms ✓ OrderedCollections 1480.8 ms ✓ FunctionWrappers 964.1 ms ✓ HashArrayMappedTries 1383.7 ms ✓ ADTypes 1135.3 ms ✓ DocStringExtensions 826.6 ms ✓ FastClosures 777.2 ms ✓ SIMDTypes 751.4 ms ✓ IteratorInterfaceExtensions 1025.0 ms ✓ NaNMath 1137.7 ms ✓ Requires 1844.4 ms ✓ CpuId 1122.4 ms ✓ LoggingExtras 1494.1 ms ✓ StructUtils 1176.2 ms ✓ Compat 1172.7 ms ✓ Preferences 1742.5 ms ✓ CommonSubexpressions 3408.2 ms ✓ SimpleTraits 1292.2 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1105.4 ms ✓ ChunkCodecLibZlib 1571.6 ms ✓ ChunkCodecLibZstd 1353.2 ms ✓ Statistics → SparseArraysExt 1507.0 ms ✓ Distances 836.8 ms ✓ DiffResults 2001.9 ms ✓ HerbSpecification 973.9 ms ✓ AliasTables 1714.0 ms ✓ ThreadingUtilities 977.7 ms ✓ Missings 3198.1 ms ✓ Jieko 873.7 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1671.3 ms ✓ InverseFunctions → InverseFunctionsTestExt 847.2 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 3106.4 ms ✓ HerbCore 1492.0 ms ✓ FillArrays → FillArraysSparseArraysExt 941.7 ms ✓ FillArrays → FillArraysStatisticsExt 3239.1 ms ✓ TimerOutputs 880.4 ms ✓ RuntimeGeneratedFunctions 3566.8 ms ✓ DataStructures 802.4 ms ✓ FunctionWrappersWrappers 902.7 ms ✓ ScopedValues 760.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 756.7 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1500.6 ms ✓ LogExpFunctions 950.0 ms ✓ Adapt 8906.9 ms ✓ FileIO 840.8 ms ✓ Compat → CompatLinearAlgebraExt 913.6 ms ✓ PrecompileTools 1231.1 ms ✓ JLLWrappers 1634.6 ms ✓ TruncatedStacktraces 1256.7 ms ✓ SciMLLogging 2907.8 ms ✓ Setfield 1296.0 ms ✓ Distances → DistancesSparseArraysExt 16550.0 ms ✓ Moshi 4887.6 ms ✓ Accessors 1868.1 ms ✓ HerbGrammar 1075.2 ms ✓ SortingAlgorithms 832.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1227.0 ms ✓ ArrayInterface 1238.4 ms ✓ Adapt → AdaptSparseArraysExt 1211.0 ms ✓ GPUArraysCore 787.7 ms ✓ EnzymeCore → AdaptExt 13353.4 ms ✓ StaticArrays 2935.3 ms ✓ RecipesBase 16808.1 ms ✓ Parsers 5085.4 ms ✓ Static 49442.6 ms ✓ JLD2 1735.8 ms ✓ OpenSpecFun_jll 2003.0 ms ✓ Accessors → TestExt 2552.7 ms ✓ Accessors → LinearAlgebraExt 1463.1 ms ✓ HerbInterpret 14084.3 ms ✓ HerbConstraints 4567.9 ms ✓ StatsBase 758.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1437.5 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 878.7 ms ✓ SciMLStructures 1706.6 ms ✓ PreallocationTools 840.0 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 3970.9 ms ✓ ArnoldiMethod 1470.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 1457.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1466.0 ms ✓ Adapt → AdaptStaticArraysExt 1619.5 ms ✓ Accessors → StaticArraysExt 7580.2 ms ✓ JSON 966.5 ms ✓ BitTwiddlingConvenienceFunctions 2441.9 ms ✓ CPUSummary 4085.1 ms ✓ StaticArrayInterface 5030.2 ms ✓ SpecialFunctions 6727.2 ms ✓ Roots 4799.6 ms ✓ SciMLOperators 12822.5 ms ✓ HerbSearch 4107.8 ms ✓ SymbolicIndexingInterface 5013.8 ms ✓ NearestNeighbors 10609.7 ms ✓ Graphs 1827.6 ms ✓ PolyesterWeave 1643.0 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1118.5 ms ✓ CloseOpenIntervals 1306.5 ms ✓ LayoutPointers 1370.9 ms ✓ DiffRules 1084.2 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1605.3 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 4026.3 ms ✓ RecursiveArrayTools 3061.1 ms ✓ Neighborhood 10699.0 ms ✓ MetaGraphsNext 1875.5 ms ✓ StrideArraysCore 6897.0 ms ✓ ForwardDiff 1748.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 25810.0 ms ✓ SciMLBase 3075.2 ms ✓ StateSpaceSets 2842.7 ms ✓ Polyester 2441.8 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1286.2 ms ✓ FastPower → FastPowerForwardDiffExt 1264.0 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1417.4 ms ✓ Roots → RootsForwardDiffExt 1574.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 3706.4 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 4399.5 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2208.8 ms ✓ FastBroadcast 2194.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 7062.9 ms ✓ DiffEqBase 4069.0 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 4105.0 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 10489.7 ms ✓ OrdinaryDiffEqCore 3765.6 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 14239.4 ms ✓ OrdinaryDiffEqTsit5 7400.9 ms ✓ DynamicalSystemsBase 30309.7 ms ✓ GraphDynamicalSystems 155 dependencies successfully precompiled in 537 seconds. 37 already precompiled. Precompilation completed after 546.63s ################################################################################ # Testing # Testing GraphDynamicalSystems Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed MKL_jll ─────────────────── v2025.2.0+0 Installed Compiler ────────────────── v0.1.1 Installed LoweredCodeUtils ────────── v3.5.0 Installed QuadGK ──────────────────── v2.11.2 Installed DynamicalSystemsBase ────── v3.10.0 Installed SoleBase ────────────────── v0.13.4 Installed Revise ──────────────────── v3.12.3 Installed Optim ───────────────────── v1.13.3 Installed TableTraits ─────────────── v1.0.1 Installed Tables ──────────────────── v1.12.1 Installed LaTeXStrings ────────────── v1.4.0 Installed NLSolversBase ───────────── v7.10.0 Installed Crayons ─────────────────── v4.1.1 Installed DelayEmbeddings ─────────── v2.7.4 Installed Polynomials ─────────────── v4.1.0 Installed JET ─────────────────────── v0.11.1 Installed Indexing ────────────────── v1.1.1 Installed oneTBB_jll ──────────────── v2022.0.0+1 Installed IntelOpenMP_jll ─────────── v2025.2.0+0 Installed StateSpaceSets ──────────── v1.5.0 Installed DataStructures ──────────── v0.18.22 Installed DataValueInterfaces ─────── v1.0.0 Installed Aqua ────────────────────── v0.8.14 Installed Scratch ─────────────────── v1.3.0 Installed PDMats ──────────────────── v0.11.36 Installed ForwardDiff ─────────────── v0.10.39 Installed Clustering ──────────────── v0.15.8 Installed HerbConstraints ─────────── v0.4.7 Installed Rmath_jll ───────────────── v0.5.1+0 Installed ComplexityMeasures ──────── v2.8.0 Installed CodeTracking ────────────── v3.0.0 Installed Combinatorics ───────────── v1.0.3 Installed AbstractFFTs ────────────── v1.5.0 Installed StringManipulation ──────── v0.4.2 Installed DifferentiationInterface ── v0.7.12 Installed JuliaSyntax ─────────────── v1.0.2 Installed FiniteDiff ──────────────── v2.29.0 Installed JuliaInterpreter ────────── v0.10.8 Installed PrettyTables ────────────── v2.4.0 Installed Rmath ───────────────────── v0.9.0 Installed Distributions ───────────── v0.25.122 Installed ThreadSafeDicts ─────────── v0.1.6 Installed Lazy ────────────────────── v0.15.1 Installed IterTools ───────────────── v1.10.0 Installed StatsFuns ───────────────── v1.5.2 Installed Dictionaries ────────────── v0.4.5 Installed Wavelets ────────────────── v0.9.5 Installed CategoricalArrays ───────── v1.0.2 Installed HypergeometricFunctions ─── v0.3.28 Installed ProgressMeter ───────────── v1.11.0 Installed PositiveFactorizations ──── v0.2.4 Installed SymbolicIndexingInterface ─ v0.3.44 Installed SoleLogics ──────────────── v0.13.2 Installed FFTW ────────────────────── v1.10.0 Installed HerbSearch ──────────────── v0.4.7 Installed FFTW_jll ────────────────── v3.3.11+0 Installed ReTestItems ─────────────── v1.35.0 Installed Attractors ──────────────── v1.7.1 Installed LineSearches ────────────── v7.5.1 Installed DSP ─────────────────────── v0.7.10 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact FFTW 2.2 MiB Updating `/tmp/jl_BxnnSA/Project.toml` [4c88cf16] + Aqua v0.8.14 ⌃ [f3fd9213] + Attractors v1.7.1 ⌃ [6e36e845] ↓ DynamicalSystemsBase v3.15.2 ⇒ v3.10.0 [13529e2e] + GraphDynamicalSystems v0.0.6 [c8e1da08] + IterTools v1.10.0 [c3a54625] + JET v0.11.1 [817f1d60] + ReTestItems v1.35.0 [b002da8f] + SoleLogics v0.13.2 Updating `/tmp/jl_BxnnSA/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [66dad0bd] + AliasTables v1.1.3 [4c88cf16] + Aqua v0.8.14 ⌃ [f3fd9213] + Attractors v1.7.1 [15f4f7f2] + AutoHashEquals v2.2.0 [324d7699] + CategoricalArrays v1.0.2 [aaaa29a8] + Clustering v0.15.8 [da1fd8a2] + CodeTracking v3.0.0 [861a8166] + Combinatorics v1.0.3 [807dbc54] + Compiler v0.1.1 ⌅ [ab4b797d] + ComplexityMeasures v2.8.0 [a8cc5b0e] + Crayons v4.1.1 ⌅ [717857b8] + DSP v0.7.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌃ [5732040d] + DelayEmbeddings v2.7.4 [85a47980] + Dictionaries v0.4.5 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 ⌃ [6e36e845] ↓ DynamicalSystemsBase v3.15.2 ⇒ v3.10.0 [7a1cc6ca] + FFTW v1.10.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] ↓ ForwardDiff v1.3.0 ⇒ v0.10.39 [13529e2e] + GraphDynamicalSystems v0.0.6 ⌃ [1fa96474] + HerbConstraints v0.4.7 [4ef9e186] + HerbGrammar v0.6.2 [5bbddadd] + HerbInterpret v0.2.1 ⌃ [3008d8e8] + HerbSearch v0.4.7 [6d54aada] + HerbSpecification v0.2.1 [34004b35] + HypergeometricFunctions v0.3.28 [313cdc1a] + Indexing v1.1.1 [c8e1da08] + IterTools v1.10.0 [c3a54625] + JET v0.11.1 [aa1ae85d] + JuliaInterpreter v0.10.8 [70703baa] + JuliaSyntax v1.0.2 [b964fa9f] + LaTeXStrings v1.4.0 [50d2b5c4] + Lazy v0.15.1 [d3d80556] + LineSearches v7.5.1 [6f1432cf] + LoweredCodeUtils v3.5.0 [d8e11817] + MLStyle v0.4.17 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [429524aa] + Optim v1.13.3 [90014a1f] + PDMats v0.11.36 [f27b6e38] + Polynomials v4.1.0 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [817f1d60] + ReTestItems v1.35.0 [295af30f] + Revise v3.12.3 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [4475fa32] + SoleBase v0.13.4 [b002da8f] + SoleLogics v0.13.2 [a2af1166] + SortingAlgorithms v1.2.2 ⌅ [40b095a5] ↓ StateSpaceSets v2.5.3 ⇒ v1.5.0 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 ⌃ [2efcf032] ↓ SymbolicIndexingInterface v0.3.46 ⇒ v0.3.44 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [1e6cf692] + TestEnv v1.102.3 [4239201d] + ThreadSafeDicts v0.1.6 [a759f4b9] + TimerOutputs v0.5.29 ⌅ [29a6e085] + Wavelets v0.9.5 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [4af54fe1] + LazyArtifacts v1.11.0 [3fa0cd96] + REPL v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_BxnnSA/Project.toml` [4c88cf16] Aqua v0.8.14 ⌃ [f3fd9213] Attractors v1.7.1 ⌃ [6e36e845] DynamicalSystemsBase v3.10.0 [13529e2e] GraphDynamicalSystems v0.0.6 [86223c79] Graphs v1.13.1 [2b23ba43] HerbCore v0.3.12 [c8e1da08] IterTools v1.10.0 [c3a54625] JET v0.11.1 [682c06a0] JSON v1.3.0 [fa8bd995] MetaGraphsNext v0.7.4 [817f1d60] ReTestItems v1.35.0 [b002da8f] SoleLogics v0.13.2 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_BxnnSA/Manifest.toml` [47edcb42] ADTypes v1.19.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 ⌃ [f3fd9213] Attractors v1.7.1 [15f4f7f2] AutoHashEquals v2.2.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.7 [324d7699] CategoricalArrays v1.0.2 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[e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Scanning for test items in project `GraphDynamicalSystems` at paths: /home/pkgeval/.julia/packages/GraphDynamicalSystems/avpUn [ Info: Finished scanning for test items in 6.58 seconds. [ Info: Scheduling 13 tests on pid 827 ERROR: LoadError: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{Bool}, ::Bool) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] _runtests_in_current_env(ti_filter::Function, paths::Tuple{String}, projectfile::String, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:510 [2] (::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String})() @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:381 [3] with_logstate(f::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [4] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [5] _runtests(ti_filter::Function, paths::Tuple{String}, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:377 [6] runtests(shouldrun::Returns{Bool}, paths::String; nworkers::Int64, nworker_threads::String, worker_init_expr::Expr, testitem_timeout::Float64, retries::Int64, memory_threshold::Float64, debug::Int64, name::Nothing, tags::Nothing, report::Bool, logs::Symbol, verbose_results::Bool, test_end_expr::Expr, validate_paths::Bool, timeout_profile_wait::Int64, gc_between_testitems::Bool, failfast::Bool, testitem_failfast::Bool, failures_first::Bool) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:347 [7] runtests(shouldrun::Function, paths::String) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:298 [8] #runtests#36 @ ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:276 [inlined] [9] runtests @ ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:273 [inlined] [10] runtests(pkg::Module) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:272 [11] top-level scope @ ~/.julia/packages/GraphDynamicalSystems/avpUn/test/runtests.jl:3 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/GraphDynamicalSystems/avpUn/test/runtests.jl:3 caused by: MethodError: no method matching setindex!(::Base.ScopedValues.ScopedValue{Bool}, ::Bool) The function `setindex!` exists, but no method is defined for this combination of argument types. Stacktrace: [1] _runtests_in_current_env(ti_filter::Function, paths::Tuple{String}, projectfile::String, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:434 [2] (::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String})() @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:381 [3] with_logstate(f::ReTestItems.var"#_runtests##0#_runtests##1"{ReTestItems.TestItemFilter{Returns{Bool}, Nothing, Nothing}, Tuple{String}, ReTestItems._Config, String}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:540 [4] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:651 [5] _runtests(ti_filter::Function, paths::Tuple{String}, cfg::ReTestItems._Config) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:377 [6] runtests(shouldrun::Returns{Bool}, paths::String; nworkers::Int64, nworker_threads::String, worker_init_expr::Expr, testitem_timeout::Float64, retries::Int64, memory_threshold::Float64, debug::Int64, name::Nothing, tags::Nothing, report::Bool, logs::Symbol, verbose_results::Bool, test_end_expr::Expr, validate_paths::Bool, timeout_profile_wait::Int64, gc_between_testitems::Bool, failfast::Bool, testitem_failfast::Bool, failures_first::Bool) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:347 [7] runtests(shouldrun::Function, paths::String) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:298 [8] #runtests#36 @ ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:276 [inlined] [9] runtests @ ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:273 [inlined] [10] runtests(pkg::Module) @ ReTestItems ~/.julia/packages/ReTestItems/5fo5Q/src/ReTestItems.jl:272 [11] top-level scope @ ~/.julia/packages/GraphDynamicalSystems/avpUn/test/runtests.jl:3 [12] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [13] top-level scope @ none:6 [14] eval(m::Module, e::Any) @ Core ./boot.jl:489 [15] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [16] _start() @ Base ./client.jl:577 Testing failed after 329.34s ERROR: LoadError: Package GraphDynamicalSystems errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 976.12s: package tests unexpectedly errored