Package evaluation to test ExpFamilyPCA on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T19:47:00.612 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.79s ################################################################################ # Installation # Installing ExpFamilyPCA... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed CommonWorldInvalidations ──── v1.0.0 Installed TermInterface ─────────────── v2.0.0 Installed DiffResults ───────────────── v1.1.0 Installed CommonSolve ───────────────── v0.2.4 Installed MacroTools ────────────────── v0.5.16 Installed DataStructures ────────────── v0.19.3 Installed ForwardDiff ───────────────── v1.3.0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Ghostscript_jll ───────────── v9.55.1+0 Installed Adapt ─────────────────────── v4.4.0 Installed Bijections ────────────────── v0.2.2 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.15.0 Installed RuntimeGeneratedFunctions ─── v0.5.16 Installed HypergeometricFunctions ───── v0.3.28 Installed ConstructionBase ──────────── v1.6.0 Installed DelimitedFiles ────────────── v1.9.1 Installed Unityper ──────────────────── v0.1.6 Installed AliasTables ───────────────── v1.1.3 Installed SymbolicUtils ─────────────── v3.32.0 Installed StatsBase ─────────────────── v0.34.8 Installed ExprTools ─────────────────── v0.1.10 Installed DynamicPolynomials ────────── v0.6.4 Installed OrderedCollections ────────── v1.8.1 Installed SymbolicIndexingInterface ─── v0.3.46 Installed ArrayInterface ────────────── v7.22.0 Installed Compat ────────────────────── v4.18.1 Installed Optim ─────────────────────── v1.13.3 Installed Combinatorics ─────────────── v1.0.2 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed PreallocationTools ────────── v0.4.34 Installed FunctionWrappersWrappers ──── v0.1.3 Installed DataAPI ───────────────────── v1.16.0 Installed DomainSets ────────────────── v0.7.16 Installed Statistics ────────────────── v1.11.1 Installed PositiveFactorizations ────── v0.2.4 Installed RecipesBase ───────────────── v1.3.4 Installed SciMLOperators ────────────── v1.13.0 Installed ExproniconLite ────────────── v0.10.14 Installed StatsAPI ──────────────────── v1.7.1 Installed PrecompileTools ───────────── v1.3.3 Installed TimerOutputs ──────────────── v0.5.29 Installed SciMLStructures ───────────── v1.7.0 Installed CommonSubexpressions ──────── v0.3.1 Installed OffsetArrays ──────────────── v1.17.0 Installed LoggingExtras ─────────────── v1.2.0 Installed TaskLocalValues ───────────── v0.1.3 Installed StaticArraysCore ──────────── v1.4.4 Installed IrrationalConstants ───────── v0.2.6 Installed StaticArrays ──────────────── v1.9.15 Installed MultivariatePolynomials ───── v0.5.13 Installed ChainRulesCore ────────────── v1.26.0 Installed Distances ─────────────────── v0.10.12 Installed GPUArraysCore ─────────────── v0.2.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Latexify ──────────────────── v0.16.10 Installed Symbolics ─────────────────── v6.57.0 Installed Sobol ─────────────────────── v1.5.0 Installed SciMLPublic ───────────────── v1.0.0 Installed Requires ──────────────────── v1.3.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed FunctionWrappers ──────────── v1.1.3 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed FiniteDiff ────────────────── v2.29.0 Installed StatsFuns ─────────────────── v1.5.2 Installed SciMLBase ─────────────────── v2.127.0 Installed PtrArrays ─────────────────── v1.3.0 Installed SciMLLogging ──────────────── v1.5.0 Installed EnumX ─────────────────────── v1.0.5 Installed NLSolversBase ─────────────── v7.10.0 Installed Distributions ─────────────── v0.25.122 Installed SpecialFunctions ──────────── v2.6.1 Installed Reexport ──────────────────── v1.2.2 Installed InverseFunctions ──────────── v0.1.17 Installed IntervalSets ──────────────── v0.7.13 Installed Jieko ─────────────────────── v0.2.1 Installed Setfield ──────────────────── v1.1.2 Installed MutableArithmetics ────────── v1.6.7 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed CompositeTypes ────────────── v0.1.4 Installed JLLWrappers ───────────────── v1.7.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Installed LineSearches ──────────────── v7.5.1 Installed SymbolicLimits ────────────── v0.2.3 Installed Primes ────────────────────── v0.5.7 Installed Moshi ─────────────────────── v0.3.7 Installed Format ────────────────────── v1.3.7 Installed PDMats ────────────────────── v0.11.36 Installed ADTypes ───────────────────── v1.19.0 Installed DocStringExtensions ───────── v0.9.5 Installed RecursiveArrayTools ───────── v3.39.0 Installed ExpFamilyPCA ──────────────── v2.0.3 Installed Accessors ─────────────────── v0.1.42 Installed DifferentiationInterface ──── v0.7.12 Installing 4 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [9c724b78] + ExpFamilyPCA v2.0.3 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [e2ed5e7c] + Bijections v0.2.2 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [861a8166] + Combinatorics v1.0.2 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.4 [4e289a0a] + EnumX v1.0.5 [9c724b78] + ExpFamilyPCA v2.0.3 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [102ac46a] + MultivariatePolynomials v0.5.13 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [0bca4576] + SciMLBase v2.127.0 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.57.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [a759f4b9] + TimerOutputs v0.5.29 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 13.64s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4336.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4062.0 ms ✓ MacroTools 1141.9 ms ✓ Reexport 1436.9 ms ✓ ConstructionBase 2167.3 ms ✓ IrrationalConstants 841.7 ms ✓ StatsAPI 2420.9 ms ✓ Format 1065.6 ms ✓ IntervalSets 2029.2 ms ✓ Combinatorics 856.1 ms ✓ TermInterface 822.7 ms ✓ CommonSolve 904.5 ms ✓ LaTeXStrings 1270.0 ms ✓ Statistics 1018.6 ms ✓ StaticArraysCore 946.9 ms ✓ CompositeTypes 839.2 ms ✓ PtrArrays 797.5 ms ✓ TaskLocalValues 987.5 ms ✓ PositiveFactorizations 936.5 ms ✓ DataAPI 955.2 ms ✓ SciMLPublic 3501.3 ms ✓ ExproniconLite 742.2 ms ✓ CommonWorldInvalidations 967.7 ms ✓ InverseFunctions 849.3 ms ✓ CompositionsBase 1134.0 ms ✓ AbstractTrees 878.6 ms ✓ EnumX 966.3 ms ✓ Bijections 2131.0 ms ✓ FillArrays 862.0 ms ✓ IntegerMathUtils 910.3 ms ✓ ExprTools 1321.5 ms ✓ OrderedCollections 1556.4 ms ✓ FunctionWrappers 1407.7 ms ✓ ADTypes 1151.8 ms ✓ DocStringExtensions 1645.8 ms ✓ OffsetArrays 771.9 ms ✓ IteratorInterfaceExtensions 978.4 ms ✓ DelimitedFiles 980.4 ms ✓ NaNMath 1199.6 ms ✓ Requires 1273.4 ms ✓ SuiteSparse 1096.9 ms ✓ LoggingExtras 1142.0 ms ✓ Compat 1144.1 ms ✓ Preferences 10426.3 ms ✓ MutableArithmetics 1928.4 ms ✓ CommonSubexpressions 1692.7 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 877.9 ms ✓ IntervalSets → IntervalSetsRandomExt 794.9 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1364.1 ms ✓ Statistics → SparseArraysExt 1557.7 ms ✓ Distances 744.7 ms ✓ IntervalSets → IntervalSetsStatisticsExt 898.9 ms ✓ DiffResults 1016.6 ms ✓ AliasTables 954.8 ms ✓ Missings 3058.0 ms ✓ Jieko 849.8 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1593.2 ms ✓ InverseFunctions → InverseFunctionsTestExt 770.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1501.7 ms ✓ FillArrays → FillArraysSparseArraysExt 922.0 ms ✓ FillArrays → FillArraysStatisticsExt 1075.6 ms ✓ Primes 3072.4 ms ✓ TimerOutputs 863.5 ms ✓ RuntimeGeneratedFunctions 3452.0 ms ✓ DataStructures 806.9 ms ✓ FunctionWrappersWrappers 765.5 ms ✓ ADTypes → ADTypesConstructionBaseExt 2025.2 ms ✓ DifferentiationInterface 1757.2 ms ✓ LogExpFunctions 2822.4 ms ✓ Sobol 1086.4 ms ✓ Adapt 1808.3 ms ✓ PDMats 811.7 ms ✓ Compat → CompatLinearAlgebraExt 876.6 ms ✓ PrecompileTools 1159.2 ms ✓ JLLWrappers 1228.3 ms ✓ SciMLLogging 1206.6 ms ✓ Unityper 2928.6 ms ✓ Setfield 1081.3 ms ✓ Distances → DistancesSparseArraysExt 12427.9 ms ✓ Moshi 3422.4 ms ✓ Accessors 793.4 ms ✓ SortingAlgorithms 1638.0 ms ✓ QuadGK 3329.0 ms ✓ MultivariatePolynomials 970.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 622.4 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 888.1 ms ✓ ArrayInterface 1015.4 ms ✓ Adapt → AdaptSparseArraysExt 942.6 ms ✓ GPUArraysCore 656.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1051.1 ms ✓ FillArrays → FillArraysPDMatsExt 1944.0 ms ✓ ChainRulesCore 9087.0 ms ✓ StaticArrays 2419.4 ms ✓ RecipesBase 1265.7 ms ✓ Rmath_jll 1165.6 ms ✓ OpenSpecFun_jll 1295.9 ms ✓ JpegTurbo_jll 1571.6 ms ✓ Accessors → TestExt 1707.5 ms ✓ Accessors → IntervalSetsExt 1643.1 ms ✓ Accessors → LinearAlgebraExt 3095.7 ms ✓ StatsBase 3202.1 ms ✓ DynamicPolynomials 559.0 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 898.9 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 613.3 ms ✓ SciMLStructures 1193.0 ms ✓ PreallocationTools 601.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 612.9 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 962.1 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 635.2 ms ✓ ADTypes → ADTypesChainRulesCoreExt 734.6 ms ✓ Distances → DistancesChainRulesCoreExt 635.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2209.1 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 3694.1 ms ✓ MultivariatePolynomials → MultivariatePolynomialsChainRulesCoreExt 619.4 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1029.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1007.7 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1003.2 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3332.7 ms ✓ DomainSets 1014.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 987.3 ms ✓ Adapt → AdaptStaticArraysExt 1075.9 ms ✓ Accessors → StaticArraysExt 953.6 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 1028.5 ms ✓ Rmath 3310.3 ms ✓ SpecialFunctions 1122.5 ms ✓ Ghostscript_jll 3256.5 ms ✓ SciMLOperators 1100.7 ms ✓ PDMats → StatsBaseExt 933.9 ms ✓ FiniteDiff 2496.1 ms ✓ SymbolicIndexingInterface 1008.6 ms ✓ DomainSets → DomainSetsRandomExt 2620.5 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1620.5 ms ✓ HypergeometricFunctions 897.8 ms ✓ DiffRules 4114.6 ms ✓ Latexify 730.6 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1067.9 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 960.9 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 895.5 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 724.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2585.3 ms ✓ RecursiveArrayTools 40543.2 ms ✓ SymbolicUtils 2032.5 ms ✓ StatsFuns 4799.0 ms ✓ ForwardDiff 1693.9 ms ✓ Latexify → SparseArraysExt 1199.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 16937.0 ms ✓ SciMLBase 6378.7 ms ✓ SymbolicLimits 3365.4 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1492.0 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9036.3 ms ✓ Distributions 2167.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1526.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1375.7 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1271.7 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2291.0 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2881.9 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2246.4 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 2911.3 ms ✓ Distributions → DistributionsTestExt 2479.7 ms ✓ Distributions → DistributionsChainRulesCoreExt 3549.0 ms ✓ SciMLBase → SciMLBaseDistributionsExt 1999.7 ms ✓ NLSolversBase 58664.9 ms ✓ Symbolics 2544.3 ms ✓ LineSearches 12043.7 ms ✓ Symbolics → SymbolicsForwardDiffExt 11497.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 6297.1 ms ✓ Optim 10749.5 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 14542.0 ms ✓ ExpFamilyPCA 167 dependencies successfully precompiled in 454 seconds. 20 already precompiled. Precompilation completed after 456.06s ################################################################################ # Testing # Testing ExpFamilyPCA Status `/tmp/jl_xvPiAq/Project.toml` [b4f34e82] Distances v0.10.12 [9c724b78] ExpFamilyPCA v2.0.3 [069b7b12] FunctionWrappers v1.1.3 [2ab3a3ac] LogExpFunctions v0.3.29 [429524aa] Optim v1.13.3 [ed01d8cd] Sobol v1.5.0 [10745b16] Statistics v1.11.1 ⌅ [0c5d862f] Symbolics v6.57.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xvPiAq/Manifest.toml` [47edcb42] ADTypes v1.19.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [e2ed5e7c] Bijections v0.2.2 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [861a8166] Combinatorics v1.0.2 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [7c1d4256] DynamicPolynomials v0.6.4 [4e289a0a] EnumX v1.0.5 [9c724b78] ExpFamilyPCA v2.0.3 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [ae98c720] Jieko v0.2.1 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [2e0e35c7] Moshi v0.3.7 [102ac46a] MultivariatePolynomials v0.5.13 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [0bca4576] SciMLBase v2.127.0 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.13.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [2efcf032] SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] SymbolicLimits v0.2.3 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.57.0 [ed4db957] TaskLocalValues v0.1.3 [8ea1fca8] TermInterface v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [a7c27f48] Unityper v0.1.6 [61579ee1] Ghostscript_jll v9.55.1+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Gamma: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:1 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). DomainError detected in the user `f` function. This occurs when the domain of a function is violated. For example, `log(-1.0)` is undefined because `log` of a real number is defined to only output real numbers, but `log` of a negative number is complex valued and therefore Julia throws a DomainError by default. Cases to be aware of include: * `log(x)`, `sqrt(x)`, `cbrt(x)`, etc. where `x<0` * `x^y` for `x<0` floating point `y` (example: `(-1.0)^(1/2) == im`) Within the context of SciML, this error can occur within the solver process even if the domain constraint would not be violated in the solution due to adaptivity. For example, an ODE solver or optimization routine may check a step at `new_u` which violates the domain constraint, and if violated reject the step and use a smaller `dt`. However, the throwing of this error will have halted the solving process. Thus the recommended fix is to replace this function with the equivalent ones from NaNMath.jl (https://github.com/JuliaMath/NaNMath.jl) which returns a NaN instead of an error. The solver will then effectively use the NaN within the error control routines to reject the out of bounds step. Additionally, one could perform a domain transformation on the variables so that such an issue does not occur in the definition of `f`. For more information, check out the following FAQ page: Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:698 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:671 [inlined] [7] _getindex @ ./broadcast.jl:619 [inlined] [8] getindex @ ./broadcast.jl:615 [inlined] [9] macro expansion @ ./broadcast.jl:994 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:993 [inlined] [12] copyto! @ ./broadcast.jl:946 [inlined] [13] copy @ ./broadcast.jl:918 [inlined] [14] materialize @ ./broadcast.jl:893 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:402 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:356 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/4n6vR/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] ┌[26] optimize │ @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] ╰──── repeated 3 times [29] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [30] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [31] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [32] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [33] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [34] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [35] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [36] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:2 [37] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [38] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:8 [inlined] [39] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [40] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [41] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [42] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [43] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [44] top-level scope @ none:6 [45] eval(m::Module, e::Any) @ Core ./boot.jl:489 [46] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [47] _start() @ Base ./client.jl:577 ItakuraSaito: Error During Test at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:18 Got exception outside of a @test DomainError with -869.9400649486282: log was called with a negative real argument but will only return a complex result if called with a complex argument. Try log(Complex(x)). DomainError detected in the user `f` function. This occurs when the domain of a function is violated. For example, `log(-1.0)` is undefined because `log` of a real number is defined to only output real numbers, but `log` of a negative number is complex valued and therefore Julia throws a DomainError by default. Cases to be aware of include: * `log(x)`, `sqrt(x)`, `cbrt(x)`, etc. where `x<0` * `x^y` for `x<0` floating point `y` (example: `(-1.0)^(1/2) == im`) Within the context of SciML, this error can occur within the solver process even if the domain constraint would not be violated in the solution due to adaptivity. For example, an ODE solver or optimization routine may check a step at `new_u` which violates the domain constraint, and if violated reject the step and use a smaller `dt`. However, the throwing of this error will have halted the solving process. Thus the recommended fix is to replace this function with the equivalent ones from NaNMath.jl (https://github.com/JuliaMath/NaNMath.jl) which returns a NaN instead of an error. The solver will then effectively use the NaN within the error control routines to reject the out of bounds step. Additionally, one could perform a domain transformation on the variables so that such an issue does not occur in the definition of `f`. For more information, check out the following FAQ page: Stacktrace: [1] throw_complex_domainerror(f::Symbol, x::Float64) @ Base.Math ./math.jl:33 [2] _log @ ./special/log.jl:295 [inlined] [3] log(x::Float64) @ Base.Math ./special/log.jl:261 [4] Bg @ ~/.julia/packages/ExpFamilyPCA/w6PkA/src/family/gamma.jl:30 [inlined] [5] _broadcast_getindex_evalf @ ./broadcast.jl:698 [inlined] [6] _broadcast_getindex @ ./broadcast.jl:671 [inlined] [7] _getindex @ ./broadcast.jl:619 [inlined] [8] getindex @ ./broadcast.jl:615 [inlined] [9] macro expansion @ ./broadcast.jl:994 [inlined] [10] macro expansion @ ./simdloop.jl:77 [inlined] [11] copyto! @ ./broadcast.jl:993 [inlined] [12] copyto! @ ./broadcast.jl:946 [inlined] [13] copy @ ./broadcast.jl:918 [inlined] [14] materialize @ ./broadcast.jl:893 [inlined] [15] (::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"})(x::Vector{Float64}, θ::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/constructors/epca4.jl:19 [16] (::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}})(â::Vector{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:122 [17] finite_difference_gradient!(df::Vector{Float64}, f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, x::Vector{Float64}, cache::FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}; relstep::Float64, absstep::Float64, dir::Bool) @ FiniteDiff ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:402 [18] finite_difference_gradient! @ ~/.julia/packages/FiniteDiff/yA5pi/src/gradients.jl:356 [inlined] [19] value_and_gradient! @ ~/.julia/packages/DifferentiationInterface/4n6vR/ext/DifferentiationInterfaceFiniteDiffExt/onearg.jl:329 [inlined] [20] (::NLSolversBase.var"#fg!#OnceDifferentiable##1"{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, DifferentiationInterfaceFiniteDiffExt.FiniteDiffGradientPrep{Tuple{ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}, Vector{Float64}, Tuple{}}, FiniteDiff.GradientCache{Nothing, Nothing, Nothing, Vector{Float64}, Val{:central}(), Float64, Val{true}()}, Float64, Float64, Bool}, ADTypes.AutoFiniteDiff{Val{:central}, Val{:central}, Val{:hcentral}, Nothing, Nothing, Bool}})(_g::Vector{Float64}, _x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/objective_types/oncedifferentiable.jl:53 [21] value_gradient!!(obj::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, x::Vector{Float64}) @ NLSolversBase ~/.julia/packages/NLSolversBase/n7XXO/src/interface.jl:82 [22] value_gradient!!(bw::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:86 [23] initial_state(method::Optim.LBFGS{Optim.InverseDiagonal, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Optim.var"#optimize##0#optimize##1"{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}}}, options::Optim.Options{Float64, Nothing}, d::Optim.BarrierWrapper{NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, Optim.BoxBarrier{FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}}, Float64, Float64, Vector{Float64}}, initial_x::Vector{Float64}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/first_order/l_bfgs.jl:168 [24] optimize(df::NLSolversBase.OnceDifferentiable{Float64, Vector{Float64}, Vector{Float64}}, l::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, u::FillArrays.Fill{Float64, 1, Tuple{Base.OneTo{Int64}}}, initial_x::Vector{Float64}, F::Optim.Fminbox{Optim.LBFGS{Nothing, LineSearches.InitialStatic{Float64}, LineSearches.HagerZhang{Float64, Base.RefValue{Bool}}, Returns{Nothing}}, Float64, Optim.var"#Fminbox##0#Fminbox##1"}, options::Optim.Options{Float64, Nothing}) @ Optim ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:456 [25] #optimize#48 @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:395 [inlined] ┌[26] optimize │ @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:381 [inlined] ╰──── repeated 3 times [29] optimize @ ~/.julia/packages/Optim/gmigl/src/multivariate/solvers/constrained/fminbox.jl:296 [inlined] [30] _optimize(f::ExpFamilyPCA.var"#_single_compress_iter##0#_single_compress_iter##1"{ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, Matrix{Float64}, Vector{Float64}}, lower::Nothing, upper::Float64, x0::SubArray{Float64, 1, Matrix{Float64}, Tuple{Int64, Base.Slice{Base.OneTo{Int64}}}, true}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:91 [31] _single_compress_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:121 [32] _single_fit_iter(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, verbose::Bool, i::Int64, steps_per_print::Int64, maxiter::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:164 [33] _fit(L::ExpFamilyPCA.var"#L#_make_loss##3"{Float64, Float64, ExpFamilyPCA.var"#Bg#31"}, V::Matrix{Float64}, A::Matrix{Float64}, X::Matrix{Float64}, maxiter::Int64, verbose::Bool, steps_per_print::Int64, options::Options{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/utils.jl:245 [34] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}; maxiter::Int64, verbose::Bool, steps_per_print::Int64) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:119 [35] fit!(epca::ExpFamilyPCA.EPCA4{ExpFamilyPCA.var"#Bg#31", ExpFamilyPCA.var"#g#32", Matrix{Float64}, Options{Float64}}, X::Matrix{Float64}) @ ExpFamilyPCA ~/.julia/packages/ExpFamilyPCA/w6PkA/src/epca.jl:109 [36] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:19 [37] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [38] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/family/test_gamma.jl:25 [inlined] [39] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [40] top-level scope @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:14 [41] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [42] macro expansion @ ~/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:17 [inlined] [43] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [44] top-level scope @ none:6 [45] eval(m::Module, e::Any) @ Core ./boot.jl:489 [46] exec_options(opts::Base.JLOptions) @ Base ./client.jl:310 [47] _start() @ Base ./client.jl:577 Test Summary: | Pass Error Total Time ExpFamilyPCA.jl | 456 2 458 5m00.5s Poisson | 92 92 1m21.9s Gaussian | 92 92 36.3s Bernoulli | 12 12 4.0s Gamma | 1 1 8.6s ItakuraSaito | 1 1 0.1s Binomial | 12 12 3.4s Continuous Bernoulli | 12 12 4.4s Negative Binomial | 12 12 3.8s Pareto | 12 12 6.7s Weibull | 12 12 4.6s Misc Options Tests | 196 196 52.2s Positive Domain | 1 1 1m29.6s Negative Domain | 3 3 4.6s RNG of the outermost testset: Xoshiro(0xfff0241072ddab67, 0xc53bc12f4c3f0b4e, 0x56d451780b2dd4ba, 0x50a4aa153d208dd8, 0x3649a58b3b63d5db) ERROR: LoadError: Some tests did not pass: 456 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ExpFamilyPCA/w6PkA/test/runtests.jl:13 Testing failed after 319.46s ERROR: LoadError: Package ExpFamilyPCA errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 908.77s: package tests unexpectedly errored