Package evaluation to test DifferentiableMetabolism on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-27T17:30:28.842


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.19s


################################################################################
# Installation
#

Installing DifferentiableMetabolism...
   Resolving package versions...
   Installed Bzip2_jll ───────────────── v1.0.9+0
   Installed CodecZlib ───────────────── v0.7.8
   Installed DiffResults ─────────────── v1.1.0
   Installed ConstructionBase ────────── v1.6.0
   Installed MacroTools ──────────────── v0.5.16
   Installed RuntimeGeneratedFunctions ─ v0.5.16
   Installed DataStructures ──────────── v0.18.22
   Installed ForwardDiff ─────────────── v1.3.0
   Installed ExprTools ───────────────── v0.1.10
   Installed OrderedCollections ──────── v1.8.1
   Installed Compat ──────────────────── v4.18.1
   Installed Statistics ──────────────── v1.11.1
   Installed TranscodingStreams ──────── v0.11.3
   Installed ConstraintTrees ─────────── v1.11.0
   Installed PrecompileTools ─────────── v1.3.3
   Installed StaticArraysCore ────────── v1.4.4
   Installed CommonSubexpressions ────── v0.3.1
   Installed StructUtils ─────────────── v2.6.0
   Installed IrrationalConstants ─────── v0.2.6
   Installed CodecBzip2 ──────────────── v0.8.5
   Installed AbstractFBCModels ───────── v1.3.0
   Installed StaticArrays ────────────── v1.9.15
   Installed NaNMath ─────────────────── v1.1.3
   Installed OpenSpecFun_jll ─────────── v0.5.6+0
   Installed JSON3 ───────────────────── v1.14.3
   Installed LogExpFunctions ─────────── v0.3.29
   Installed StableRNGs ──────────────── v1.0.4
   Installed DiffRules ───────────────── v1.15.1
   Installed FastDifferentiation ─────── v0.4.5
   Installed JuMP ────────────────────── v1.29.3
   Installed Parsers ─────────────────── v2.8.3
   Installed BenchmarkTools ──────────── v1.6.3
   Installed Preferences ─────────────── v1.5.0
   Installed SpecialFunctions ────────── v2.6.1
   Installed JSON ────────────────────── v1.3.0
   Installed JLLWrappers ─────────────── v1.7.1
   Installed MutableArithmetics ──────── v1.6.7
   Installed DifferentiableMetabolism ── v0.3.1
   Installed COBREXA ─────────────────── v2.9.1
   Installed StructTypes ─────────────── v1.11.0
   Installed DocStringExtensions ─────── v0.9.5
   Installed MathOptInterface ────────── v1.46.0
  Installing 2 artifacts
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Bzip2       503.5 KiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [9677e053] + DifferentiableMetabolism v0.3.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [5a4f3dfa] + AbstractFBCModels v1.3.0
  [6e4b80f9] + BenchmarkTools v1.6.3
  [babc4406] + COBREXA v2.9.1
  [523fee87] + CodecBzip2 v0.8.5
  [944b1d66] + CodecZlib v0.7.8
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [5515826b] + ConstraintTrees v1.11.0
  [187b0558] + ConstructionBase v1.6.0
⌅ [864edb3b] + DataStructures v0.18.22
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [9677e053] + DifferentiableMetabolism v0.3.1
  [ffbed154] + DocStringExtensions v0.9.5
  [e2ba6199] + ExprTools v0.1.10
  [eb9bf01b] + FastDifferentiation v0.4.5
  [f6369f11] + ForwardDiff v1.3.0
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.3.0
  [0f8b85d8] + JSON3 v1.14.3
  [4076af6c] + JuMP v1.29.3
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [1914dd2f] + MacroTools v0.5.16
  [b8f27783] + MathOptInterface v1.46.0
  [d8a4904e] + MutableArithmetics v1.6.7
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [7e49a35a] + RuntimeGeneratedFunctions v0.5.16
  [276daf66] + SpecialFunctions v2.6.1
  [860ef19b] + StableRNGs v1.0.4
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [856f2bd8] + StructTypes v1.11.0
  [ec057cc2] + StructUtils v2.6.0
  [3bb67fe8] + TranscodingStreams v0.11.3
  [6e34b625] + Bzip2_jll v1.0.9+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.17.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 8.91s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
   4507.5 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   4112.7 ms  ✓ MacroTools
    946.1 ms  ✓ Statistics
   1088.8 ms  ✓ ConstructionBase
   2018.8 ms  ✓ IrrationalConstants
    953.0 ms  ✓ StaticArraysCore
   1233.9 ms  ✓ OrderedCollections
    916.1 ms  ✓ StableRNGs
   1051.3 ms  ✓ DocStringExtensions
    860.1 ms  ✓ ExprTools
   1225.9 ms  ✓ TranscodingStreams
    957.8 ms  ✓ NaNMath
   1549.3 ms  ✓ StructTypes
   1254.0 ms  ✓ StructUtils
   1088.0 ms  ✓ Compat
   1052.1 ms  ✓ Preferences
  11142.1 ms  ✓ MutableArithmetics
   1667.5 ms  ✓ CommonSubexpressions
   1267.3 ms  ✓ Statistics → SparseArraysExt
    738.8 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
    842.8 ms  ✓ DiffResults
   3905.5 ms  ✓ AbstractFBCModels
   1363.1 ms  ✓ LogExpFunctions
    858.5 ms  ✓ RuntimeGeneratedFunctions
    909.3 ms  ✓ CodecZlib
    799.2 ms  ✓ Compat → CompatLinearAlgebraExt
   1176.9 ms  ✓ JLLWrappers
    995.9 ms  ✓ PrecompileTools
   3769.8 ms  ✓ DataStructures
   1387.1 ms  ✓ Bzip2_jll
   1333.6 ms  ✓ OpenSpecFun_jll
  13302.3 ms  ✓ StaticArrays
  16769.9 ms  ✓ Parsers
   4315.0 ms  ✓ ConstraintTrees
    991.6 ms  ✓ CodecBzip2
   5082.6 ms  ✓ SpecialFunctions
   1335.4 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1473.3 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
  14774.0 ms  ✓ JSON3
   7723.4 ms  ✓ JSON
   1235.0 ms  ✓ DiffRules
   3522.2 ms  ✓ BenchmarkTools
   6877.3 ms  ✓ ForwardDiff
   9564.4 ms  ✓ FastDifferentiation
   2214.9 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
  77895.3 ms  ✓ MathOptInterface
  65386.0 ms  ✓ JuMP
  19531.7 ms  ✓ COBREXA
ERROR: LoadError: cannot declare DifferentiableMetabolism.differentiate_prepare_kkt public; it is already declared exported
Stacktrace:
  [1] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [2] top-level scope
    @ ~/.julia/packages/DifferentiableMetabolism/Sjahv/src/DifferentiableMetabolism.jl:53
  [3] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
  [5] top-level scope
    @ stdin:5
  [6] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
  [8] include_string
    @ ./loading.jl:3013 [inlined]
  [9] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [10] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/Sjahv/src/public_api.jl:19
in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/Sjahv/src/DifferentiableMetabolism.jl:19
in expression starting at stdin:5

Precompilation completed after 341.14s


################################################################################
# Testing
#

     Testing DifferentiableMetabolism
        Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function.
   Installed libass_jll ────────────────── v0.17.4+0
   Installed ImageIO ───────────────────── v0.6.9
   Installed libaom_jll ────────────────── v3.13.1+0
   Installed Libuuid_jll ───────────────── v2.41.2+0
   Installed HarfBuzz_jll ──────────────── v8.5.1+0
   Installed MosaicViews ───────────────── v0.3.4
   Installed Extents ───────────────────── v0.1.6
   Installed PolygonOps ────────────────── v0.1.2
   Installed Cairo_jll ─────────────────── v1.18.5+0
   Installed MKL_jll ───────────────────── v2025.2.0+0
   Installed Libtiff_jll ───────────────── v4.7.2+0
   Installed Fontconfig_jll ────────────── v2.17.1+0
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed QuadGK ────────────────────── v2.11.2
   Installed FileIO ────────────────────── v1.17.1
   Installed Graphics ──────────────────── v1.1.3
   Installed Opus_jll ──────────────────── v1.5.2+0
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed Tables ────────────────────── v1.12.1
   Installed AdaptivePredicates ────────── v1.2.0
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed Ogg_jll ───────────────────── v1.3.6+0
   Installed EnumX ─────────────────────── v1.0.5
   Installed InverseFunctions ──────────── v0.1.17
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed Reexport ──────────────────── v1.2.2
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed Missings ──────────────────── v1.2.0
   Installed TableTraits ───────────────── v1.0.1
   Installed Imath_jll ─────────────────── v3.1.11+0
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed MappedArrays ──────────────── v0.4.2
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed RangeArrays ───────────────── v0.3.2
   Installed Grisu ─────────────────────── v1.0.2
   Installed Format ────────────────────── v1.3.7
   Installed CRlibm ────────────────────── v1.0.2
   Installed Packing ───────────────────── v0.5.1
   Installed Inflate ───────────────────── v0.1.5
   Installed AbstractTrees ─────────────── v0.4.5
   Installed FillArrays ────────────────── v1.15.0
   Installed ColorBrewer ───────────────── v0.4.2
   Installed OpenEXR_jll ───────────────── v3.2.4+0
   Installed LazyModules ───────────────── v0.3.1
   Installed oneTBB_jll ────────────────── v2022.0.0+1
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed UnicodeFun ────────────────── v0.4.1
   Installed Observables ───────────────── v0.5.5
   Installed Cairo ─────────────────────── v1.1.1
   Installed StatsBase ─────────────────── v0.34.8
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed CairoMakie ────────────────── v0.15.7
   Installed IntelOpenMP_jll ───────────── v2025.2.0+0
   Installed DataValueInterfaces ───────── v1.0.0
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   Installed Pixman_jll ────────────────── v0.44.2+0
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   Installed libsixel_jll ──────────────── v1.10.5+0
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   Installed FFMPEG_jll ────────────────── v7.1.1+0
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   Installed AMD ───────────────────────── v0.5.3
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed libvorbis_jll ─────────────── v1.3.8+0
   Installed Isoband ───────────────────── v0.1.1
   Installed PtrArrays ─────────────────── v1.3.0
   Installed IntervalArithmetic ────────── v1.0.2
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed IntervalSets ──────────────── v0.7.13
   Installed Showoff ───────────────────── v1.0.3
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed FFTW ──────────────────────── v1.10.0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed IndirectArrays ────────────── v1.0.0
   Installed Automa ────────────────────── v1.1.0
   Installed DelaunayTriangulation ─────── v1.6.5
  Installing 52 artifacts
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact libpng                  328.9 KiB
   Installed artifact Expat                   283.3 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact libass                  427.8 KiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact Libtiff                 2.3 MiB
   Installed artifact Pango                   2.0 MiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact x264                    2.1 MiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact Imath                   182.8 KiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact x265                    1.4 MiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact Libuuid                 3.7 MiB
   Installed artifact FFMPEG                  11.4 MiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact JpegTurbo               1.4 MiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact isoband                 25.7 KiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact Fontconfig              984.8 KiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact GettextRuntime          543.0 KiB
   Installed artifact Xorg_libX11             13.9 MiB
   Installed artifact OpenEXR                 1.9 MiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact Libmount                6.5 MiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact MakieAssets             24.9 MiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact Libffi                  44.2 KiB
   Installed artifact Opus                    925.5 KiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
   Installed artifact Ogg                     250.3 KiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact Glib                    7.7 MiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact libaom                  6.4 MiB
    Updating `/tmp/jl_Owq8ys/Project.toml`
  [13f3f980] + CairoMakie v0.15.7
  [61c947e1] + Clarabel v0.11.0
  [9677e053] + DifferentiableMetabolism v0.3.1
  [475c1105] + JSONFBCModels v1.0.1
  [6dd1b50a] + Tulip v0.9.8
    Updating `/tmp/jl_Owq8ys/Manifest.toml`
  [14f7f29c] + AMD v0.5.3
  [621f4979] + AbstractFFTs v1.5.0
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [35492f91] + AdaptivePredicates v1.2.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
  [18cc8868] + BaseDirs v1.3.2
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [159f3aea] + Cairo v1.1.1
  [13f3f980] + CairoMakie v0.15.7
  [d360d2e6] + ChainRulesCore v1.26.0
  [61c947e1] + Clarabel v0.11.0
  [a2cac450] + ColorBrewer v0.4.2
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [95dc2771] + ComputePipeline v0.1.5
  [d38c429a] + Contour v0.6.3
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [927a84f5] + DelaunayTriangulation v1.6.5
  [9677e053] + DifferentiableMetabolism v0.3.1
  [31c24e10] + Distributions v0.25.122
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.9
  [411431e0] + Extents v0.1.6
  [7a1cc6ca] + FFTW v1.10.0
  [9aa1b823] + FastClosures v0.3.2
  [5789e2e9] + FileIO v1.17.1
  [8fc22ac5] + FilePaths v0.9.0
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.8
  [14197337] + GenericLinearAlgebra v0.3.19
  [5c1252a2] + GeometryBasics v0.5.10
  [a2bd30eb] + Graphics v1.1.3
  [3955a311] + GridLayoutBase v0.11.2
  [42e2da0e] + Grisu v1.0.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [a98d9a8b] + Interpolations v0.16.2
  [d1acc4aa] + IntervalArithmetic v1.0.2
  [8197267c] + IntervalSets v0.7.13
  [3587e190] + InverseFunctions v0.1.17
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [682c06a0] ↓ JSON v1.3.0 ⇒ v0.21.4
  [475c1105] + JSONFBCModels v1.0.1
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.10
  [ba0b0d4f] + Krylov v0.10.3
  [40e66cde] + LDLFactorizations v0.10.1
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [5c8ed15e] + LinearOperators v2.11.0
  [ee78f7c6] + Makie v0.24.7
  [dbb5928d] + MappedArrays v0.4.2
  [0a4f8689] + MathTeXEngine v0.6.7
  [e1d29d7a] + Missings v1.2.0
  [e94cdb99] + MosaicViews v0.3.4
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [90014a1f] + PDMats v0.11.36
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.4
  [647866c9] + PolygonOps v0.1.2
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [bfc457fd] + QDLDL v0.4.1
  [4b34888f] + QOI v1.0.2
  [10f199a5] + QPSReader v0.2.1
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.9.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.2
  [6c6a2e73] + Scratch v1.3.0
  [65257c39] + ShaderAbstractions v0.5.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [699a6c99] + SimpleTraits v0.9.5
  [45858cf5] + Sixel v0.1.5
  [66db9d55] + SnoopPrecompile v1.0.3
  [a2af1166] + SortingAlgorithms v1.2.2
  [cae243ae] + StackViews v0.1.2
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.8
  [4c63d2b9] + StatsFuns v1.5.2
  [09ab397b] + StructArrays v0.7.2
  [ec057cc2] - StructUtils v2.6.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.6
  [a759f4b9] + TimerOutputs v0.5.29
  [981d1d27] + TriplotBase v0.1.0
  [6dd1b50a] + Tulip v0.9.8
  [1cfade01] + UnicodeFun v0.4.1
  [1986cc42] + Unitful v1.25.1
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [83423d85] + Cairo_jll v1.18.5+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.7.3+0
⌅ [b22a6f82] + FFMPEG_jll v7.1.1+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [59f7168a] + Giflib_jll v5.2.3+0
  [7746bdde] + Glib_jll v2.86.0+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.3+0
  [c1c5ebd0] + LAME_jll v3.100.3+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
⌅ [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [856f044c] + MKL_jll v2025.2.0+0
  [e7412a2a] + Ogg_jll v1.3.6+0
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [91d4177d] + Opus_jll v1.5.2+0
  [36c8627f] + Pango_jll v1.57.0+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.13.1+0
  [0ac62f75] + libass_jll v0.17.4+0
  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [b53b4c65] + libpng_jll v1.6.51+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.8+0
  [c5f90fcd] + libwebp_jll v1.6.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [8bf52ea8] + CRC32c v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [4607b0f0] + SuiteSparse
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
        Test Successfully re-resolved
      Status `/tmp/jl_Owq8ys/Project.toml`
  [5a4f3dfa] AbstractFBCModels v1.3.0
  [babc4406] COBREXA v2.9.1
  [13f3f980] CairoMakie v0.15.7
  [61c947e1] Clarabel v0.11.0
  [5515826b] ConstraintTrees v1.11.0
  [9677e053] DifferentiableMetabolism v0.3.1
  [ffbed154] DocStringExtensions v0.9.5
  [eb9bf01b] FastDifferentiation v0.4.5
  [475c1105] JSONFBCModels v1.0.1
  [4076af6c] JuMP v1.29.3
  [6dd1b50a] Tulip v0.9.8
  [f43a241f] Downloads v1.7.0
  [37e2e46d] LinearAlgebra v1.13.0
  [2f01184e] SparseArrays v1.13.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Owq8ys/Manifest.toml`
  [14f7f29c] AMD v0.5.3
  [5a4f3dfa] AbstractFBCModels v1.3.0
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.4.0
  [35492f91] AdaptivePredicates v1.2.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.8
  [18cc8868] BaseDirs v1.3.2
  [6e4b80f9] BenchmarkTools v1.6.3
  [fa961155] CEnum v0.5.0
  [babc4406] COBREXA v2.9.1
  [96374032] CRlibm v1.0.2
  [159f3aea] Cairo v1.1.1
  [13f3f980] CairoMakie v0.15.7
  [d360d2e6] ChainRulesCore v1.26.0
  [61c947e1] Clarabel v0.11.0
  [523fee87] CodecBzip2 v0.8.5
  [944b1d66] CodecZlib v0.7.8
  [a2cac450] ColorBrewer v0.4.2
  [35d6a980] ColorSchemes v3.31.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [95dc2771] ComputePipeline v0.1.5
  [5515826b] ConstraintTrees v1.11.0
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [927a84f5] DelaunayTriangulation v1.6.5
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [9677e053] DifferentiableMetabolism v0.3.1
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.9
  [e2ba6199] ExprTools v0.1.10
  [411431e0] Extents v0.1.6
  [7a1cc6ca] FFTW v1.10.0
  [9aa1b823] FastClosures v0.3.2
  [eb9bf01b] FastDifferentiation v0.4.5
  [5789e2e9] FileIO v1.17.1
  [8fc22ac5] FilePaths v0.9.0
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.15.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v1.3.0
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
  [14197337] GenericLinearAlgebra v0.3.19
  [5c1252a2] GeometryBasics v0.5.10
  [a2bd30eb] Graphics v1.1.3
  [3955a311] GridLayoutBase v0.11.2
  [42e2da0e] Grisu v1.0.2
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [a98d9a8b] Interpolations v0.16.2
  [d1acc4aa] IntervalArithmetic v1.0.2
  [8197267c] IntervalSets v0.7.13
  [3587e190] InverseFunctions v0.1.17
  [92d709cd] IrrationalConstants v0.2.6
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
⌅ [682c06a0] JSON v0.21.4
  [0f8b85d8] JSON3 v1.14.3
  [475c1105] JSONFBCModels v1.0.1
  [b835a17e] JpegTurbo v0.1.6
  [4076af6c] JuMP v1.29.3
  [5ab0869b] KernelDensity v0.6.10
  [ba0b0d4f] Krylov v0.10.3
  [40e66cde] LDLFactorizations v0.10.1
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [5c8ed15e] LinearOperators v2.11.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [ee78f7c6] Makie v0.24.7
  [dbb5928d] MappedArrays v0.4.2
  [b8f27783] MathOptInterface v1.46.0
  [0a4f8689] MathTeXEngine v0.6.7
  [e1d29d7a] Missings v1.2.0
  [e94cdb99] MosaicViews v0.3.4
  [d8a4904e] MutableArithmetics v1.6.7
  [77ba4419] NaNMath v1.1.3
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.36
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [69de0a69] Parsers v2.8.3
  [3bbf5609] PikaParser v0.6.1
  [eebad327] PkgVersion v0.3.3
  [995b91a9] PlotUtils v1.4.4
  [647866c9] PolygonOps v0.1.2
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [bfc457fd] QDLDL v0.4.1
  [4b34888f] QOI v1.0.2
  [10f199a5] QPSReader v0.2.1
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.9.0
  [5eaf0fd0] RoundingEmulator v0.2.1
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        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
ERROR: LoadError: cannot declare DifferentiableMetabolism.differentiate_prepare_kkt public; it is already declared exported
Stacktrace:
  [1] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
  [2] top-level scope
    @ ~/.julia/packages/DifferentiableMetabolism/Sjahv/src/DifferentiableMetabolism.jl:53
  [3] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
  [4] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
  [5] top-level scope
    @ stdin:5
  [6] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
  [7] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
  [8] include_string
    @ ./loading.jl:3013 [inlined]
  [9] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [10] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/Sjahv/src/public_api.jl:19
in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/Sjahv/src/DifferentiableMetabolism.jl:19
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ DifferentiableMetabolism
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

DifferentiableMetabolism 
Failed to precompile DifferentiableMetabolism [9677e053-0fc1-49e6-98a8-2ad3a1525e54] to "/home/pkgeval/.julia/compiled/v1.14/DifferentiableMetabolism/jl_2b8m3S" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/Sjahv/test/runtests.jl:20

Testing failed after 218.08s

ERROR: LoadError: Package DifferentiableMetabolism errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 621.65s: package fails to precompile