Package evaluation to test BioMakie on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-28T00:32:29.213 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.16s ################################################################################ # Installation # Installing BioMakie... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.2+0 Installed ImageIO ───────────────────── v0.6.9 Installed libaom_jll ────────────────── v3.13.1+0 Installed CommonWorldInvalidations ──── v1.0.0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed MosaicViews ───────────────── v0.3.4 Installed libass_jll ────────────────── v0.17.4+0 Installed PolygonOps ────────────────── v0.1.2 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed MKL_jll ───────────────────── v2025.2.0+0 Installed Libtiff_jll ───────────────── v4.7.2+0 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed Extents ───────────────────── v0.1.6 Installed Xorg_libXinerama_jll ──────── v1.1.6+0 Installed OrderedCollections ────────── v1.8.1 Installed NearestNeighbors ──────────── v0.4.24 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed TensorCast ────────────────── v0.4.9 Installed Fontconfig_jll ────────────── v2.17.1+0 Installed TransmuteDims ─────────────── v0.1.17 Installed Colorfy ───────────────────── v1.1.2 Installed ChainRules ────────────────── v1.72.6 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed StaticArrayInterface ──────── v1.8.0 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed Graphics ──────────────────── v1.1.3 Installed PairwiseListMatrices ──────── v0.11.1 Installed FileIO ────────────────────── v1.17.1 Installed libinchi_jll ──────────────── v1.6.0+0 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.5.2+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed ScopedValues ──────────────── v1.5.0 Installed AdaptivePredicates ────────── v1.2.0 Installed PackageExtensionCompat ────── v1.0.2 Installed Tables ────────────────────── v1.12.1 Installed BioAlignments ─────────────── v3.1.0 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed Reexport ──────────────────── v1.2.2 Installed EnumX ─────────────────────── v1.0.5 Installed InverseFunctions ──────────── v0.1.17 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Hyperscript ───────────────── v0.0.5 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.5.0 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Static ────────────────────── v1.3.1 Installed TableTraits ───────────────── v1.0.1 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed GLMakie ───────────────────── v0.11.11 Installed Imath_jll ─────────────────── v3.1.11+0 Installed SortingAlgorithms ─────────── v1.2.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed MappedArrays ──────────────── v0.4.2 Installed Grisu ─────────────────────── v1.0.2 Installed EpollShim_jll ─────────────── v0.0.20230411+1 Installed RangeArrays ───────────────── v0.3.2 Installed Format ────────────────────── v1.3.7 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed DataStructures ────────────── v0.18.22 Installed MacroTools ────────────────── v0.5.16 Installed ColorBrewer ───────────────── v0.4.2 Installed Indexing ──────────────────── v1.1.1 Installed URIs ──────────────────────── v1.6.1 Installed DiffResults ───────────────── v1.1.0 Installed Quaternions ───────────────── v0.7.7 Installed StridedViews ──────────────── v0.4.1 Installed Packing ───────────────────── v0.5.1 Installed AbstractTrees ─────────────── v0.4.5 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed FillArrays ────────────────── v1.15.0 Installed MakieCore ─────────────────── v0.9.5 Installed LazyModules ───────────────── v0.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+1 Installed ArnoldiMethod ─────────────── v0.4.0 Installed MathTeXEngine ─────────────── v0.6.7 Installed UnicodeFun ────────────────── v0.4.1 Installed x264_jll ──────────────────── v10164.0.1+0 Installed Cairo ─────────────────────── v1.1.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Observables ───────────────── v0.5.5 Installed Zygote ────────────────────── v0.7.10 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed StatsBase ─────────────────── v0.34.8 Installed Xorg_libXfixes_jll ────────── v6.0.2+0 Installed IntelOpenMP_jll ───────────── v2025.2.0+0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed TransformsBase ────────────── v1.6.0 Installed ArrayInterface ────────────── v7.22.0 Installed LoggingExtras ─────────────── v1.2.0 Installed CommonSubexpressions ──────── v0.3.1 Installed Libffi_jll ────────────────── v3.4.7+0 Installed GPUArraysCore ─────────────── v0.2.0 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.7.3+0 Installed libdecor_jll ──────────────── v0.2.2+0 Installed RealDot ───────────────────── v0.1.0 Installed IrrationalConstants ───────── v0.2.6 Installed Xorg_libXcursor_jll ───────── v1.2.4+0 Installed coordgenlibs_jll ──────────── v3.0.2+0 Installed libpng_jll ────────────────── v1.6.51+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed ColorVectorSpace ──────────── v0.11.0 Installed Contour ───────────────────── v0.6.3 Installed SimpleTraits ──────────────── v0.9.5 Installed ImageMetadata ─────────────── v0.9.10 Installed RoundingEmulator ──────────── v0.2.1 Installed DataValues ────────────────── v0.4.13 Installed Interpolations ────────────── v0.15.1 Installed StableRNGs ────────────────── v1.0.4 Installed HTTP ──────────────────────── v1.10.19 Installed ImageShow ─────────────────── v0.3.8 Installed BitFlags ──────────────────── v0.1.9 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed libsixel_jll ──────────────── v1.10.5+0 Installed FASTX ─────────────────────── v2.1.7 Installed Scratch ───────────────────── v1.3.0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FFMPEG_jll ────────────────── v6.1.3+0 Installed SimpleBufferStream ────────── v1.2.0 Installed ShaderAbstractions ────────── v0.5.0 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PDMats ────────────────────── v0.11.36 Installed GZip ──────────────────────── v0.6.2 Installed NamedArrays ───────────────── v0.10.5 Installed CoordRefSystems ───────────── v0.18.10 Installed ImageCore ─────────────────── v0.10.5 Installed AxisArrays ────────────────── v0.4.8 Installed DocStringExtensions ───────── v0.9.5 Installed PNGFiles ──────────────────── v0.4.4 Installed BioSequences ──────────────── v3.5.0 Installed IntervalTrees ─────────────── v1.1.0 Installed CircularArrays ────────────── v1.4.0 Installed JpegTurbo ─────────────────── v0.1.6 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ForwardDiff ───────────────── v1.3.0 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed LightXML ──────────────────── v0.9.3 Installed FreeType ──────────────────── v4.1.1 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed ColorSchemes ──────────────── v3.31.0 Installed StackViews ────────────────── v0.1.2 Installed StringViews ───────────────── v1.3.5 Installed KernelDensity ─────────────── v0.6.10 Installed TiledIteration ────────────── v0.5.0 Installed AliasTables ───────────────── v1.1.3 Installed SplitApplyCombine ─────────── v1.2.3 Installed GLFW ──────────────────────── v3.4.5 Installed ConcurrentUtilities ───────── v2.5.0 Installed SparseInverseSubset ───────── v0.1.2 Installed HashArrayMappedTries ──────── v0.2.0 Installed MolecularGraph ────────────── v0.18.0 Installed Combinatorics ─────────────── v1.0.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.2 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed MeshIO ────────────────────── v0.5.3 Installed InvertedIndices ───────────── v1.3.1 Installed Xorg_libXi_jll ────────────── v1.8.3+0 Installed Netpbm ────────────────────── v1.1.1 Installed Wayland_jll ───────────────── v1.24.0+0 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.13.1 Installed StaticArraysCore ──────────── v1.4.4 Installed ImageAxes ─────────────────── v0.6.12 Installed Xorg_libxkbfile_jll ───────── v1.1.3+0 Installed StaticArrays ──────────────── v1.9.15 Installed AbstractFFTs ──────────────── v1.5.0 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed AxisAlgorithms ────────────── v1.1.0 Installed QOI ───────────────────────── v1.0.2 Installed ColorTypes ────────────────── v0.12.1 Installed SciMLPublic ───────────────── v1.0.0 Installed Xorg_xkbcomp_jll ──────────── v1.4.7+0 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.86.0+0 Installed BaseDirs ──────────────────── v1.3.2 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed AutoHashEquals ────────────── v2.2.0 Installed Rmath ─────────────────────── v0.9.0 Installed BioGenerics ───────────────── v0.1.5 Installed FilePaths ─────────────────── v0.8.3 Installed StatsFuns ─────────────────── v1.5.2 Installed Distributions ─────────────── v0.25.122 Installed Unitful ───────────────────── v1.25.1 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed GridLayoutBase ────────────── v0.11.2 Installed OpenEXR ───────────────────── v0.3.3 Installed Xorg_xkeyboard_config_jll ─── v2.44.0+0 Installed IRTools ───────────────────── v0.4.15 Installed SignedDistanceFields ──────── v0.4.0 Installed JLLWrappers ───────────────── v1.7.1 Installed ZygoteRules ───────────────── v0.2.7 Installed BioMakie ──────────────────── v0.4.4 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v4.1.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed ExactPredicates ───────────── v2.2.9 Installed Pango_jll ─────────────────── v1.57.0+0 Installed StructTypes ───────────────── v1.11.0 Installed IterTools ─────────────────── v1.10.0 Installed Graphs ────────────────────── v1.13.1 Installed Lazy ──────────────────────── v0.15.1 Installed TiffImages ────────────────── v0.11.6 Installed ModernGL ──────────────────── v1.1.8 Installed Dictionaries ──────────────── v0.4.5 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed JpegTurbo_jll ─────────────── v3.1.3+0 Installed FilePathsBase ─────────────── v0.9.24 Installed PaddedViews ───────────────── v0.5.12 Installed MIToS ─────────────────────── v3.2.3 Installed Dbus_jll ──────────────────── v1.16.2+0 Installed Adapt ─────────────────────── v4.4.0 Installed BioStructures ─────────────── v4.7.0 Installed ConstructionBase ──────────── v1.6.0 Installed HypergeometricFunctions ───── v0.3.28 Installed Libmount_jll ──────────────── v2.41.2+0 Installed TriplotBase ───────────────── v0.1.0 Installed ExceptionUnwrapping ───────── v0.1.11 Installed Sixel ─────────────────────── v0.1.5 Installed Compat ────────────────────── v4.18.1 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed TranscodingStreams ────────── v0.11.3 Installed PlotUtils ─────────────────── v1.4.4 Installed TensorCore ────────────────── v0.1.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed Makie ─────────────────────── v0.22.10 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed ImageBase ─────────────────── v0.1.7 Installed StatsAPI ──────────────────── v1.7.1 Installed StructArrays ──────────────── v0.7.2 Installed StringEncodings ───────────── v0.3.7 Installed ProgressMeter ─────────────── v1.11.0 Installed MbedTLS ───────────────────── v1.1.9 Installed OffsetArrays ──────────────── v1.17.0 Installed OpenSSL ───────────────────── v1.6.0 Installed WebP ──────────────────────── v0.1.3 Installed BioSymbols ────────────────── v5.2.0 Installed TableTraitsUtils ──────────── v1.0.2 Installed xkbcommon_jll ─────────────── v1.13.0+0 Installed Meshes ────────────────────── v0.53.30 Installed Animations ────────────────── v0.4.2 Installed TupleTools ────────────────── v1.6.0 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed ChainRulesCore ────────────── v1.26.0 Installed Ratios ────────────────────── v0.4.5 Installed JSON3 ─────────────────────── v1.14.3 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed GLFW_jll ──────────────────── v3.4.0+2 Installed YAML ──────────────────────── v0.4.16 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed IfElse ────────────────────── v0.1.1 Installed Isoband ───────────────────── v0.1.1 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed PtrArrays ─────────────────── v1.3.0 Installed IntervalArithmetic ────────── v1.0.2 Installed XML2_jll ──────────────────── v2.15.1+0 Installed IntervalSets ──────────────── v0.7.13 Installed FixedPointNumbers ─────────── v0.8.5 Installed Showoff ───────────────────── v1.0.3 Installed SpecialFunctions ──────────── v2.6.1 Installed FastaIO ───────────────────── v1.1.0 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Rotations ─────────────────── v1.7.1 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed LazyStack ─────────────────── v0.1.3 Installed FFTW ──────────────────────── v1.10.0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.1010+0 Installed Automa ────────────────────── v1.1.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Bessels ───────────────────── v0.2.8 Installed Xorg_libXrandr_jll ────────── v1.5.5+0 Installed IndirectArrays ────────────── v1.0.0 Installed Strided ───────────────────── v2.3.2 Installed DelaunayTriangulation ─────── v1.6.5 Installing 70 artifacts Installed artifact Xorg_libXau 36.6 KiB Installed artifact LAME 292.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact GLFW 180.1 KiB Installed artifact libpng 328.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Expat 283.3 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Dbus 489.8 KiB Installed artifact libass 427.8 KiB Installed artifact Giflib 154.6 KiB Installed artifact Libiconv 1.9 MiB Installed artifact x264 2.1 MiB Installed artifact EarCut 80.5 KiB Installed artifact Pango 2.0 MiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Libtiff 2.3 MiB Installed artifact libwebp 2.6 MiB Installed artifact xkbcommon 298.7 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Imath 182.8 KiB Installed artifact Libuuid 3.7 MiB Installed artifact Graphite2 120.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact x265 1.4 MiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact JpegTurbo 1.4 MiB Installed artifact libinchi 933.4 KiB Installed artifact Cairo 2.2 MiB Installed artifact libdecor 44.1 KiB Installed artifact isoband 25.7 KiB Installed artifact FFMPEG 11.0 MiB Installed artifact FFTW 2.2 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact coordgenlibs 303.6 KiB Installed artifact Fontconfig 984.8 KiB Installed artifact FriBidi 78.9 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact XZ 1.5 MiB Installed artifact Wayland 390.6 KiB Installed artifact libvorbis 271.0 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact libsixel 177.3 KiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact LERC 272.9 KiB Installed artifact LZO 208.9 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Libmount 6.5 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Opus 925.5 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Glib 7.7 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact XML2 2.2 MiB Installed artifact libaom 6.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [7de43156] + BioMakie v0.4.4 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [15f4f7f2] + AutoHashEquals v2.2.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [0e736298] + Bessels v0.2.8 [00701ae9] + BioAlignments v3.1.0 [47718e42] + BioGenerics v0.1.5 [7de43156] + BioMakie v0.4.4 [7e6ae17a] + BioSequences v3.5.0 [de9282ab] + BioStructures v4.7.0 [3c28c6f8] + BioSymbols v5.2.0 [d1d4a3ce] + BitFlags v0.1.9 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [7a955b69] + CircularArrays v1.4.0 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [03fe91ce] + Colorfy v1.1.2 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 ⌅ [b46f11dc] + CoordRefSystems v0.18.10 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [e7dc6d0d] + DataValues v0.4.13 [927a84f5] + DelaunayTriangulation v1.6.5 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.10.0 [a0c94c4b] + FastaIO v1.1.0 [5789e2e9] + FileIO v1.17.1 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.0 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [f7f18e0c] + GLFW v3.4.5 ⌅ [e9467ef8] + GLMakie v0.11.11 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.1 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [4e3cecfd] + ImageShow v0.3.8 [313cdc1a] + Indexing v1.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v1.0.2 [8197267c] + IntervalSets v0.7.13 [524e6230] + IntervalTrees v1.1.0 [3587e190] + 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isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [172afb32] + libinchi_jll v1.6.0+0 [b53b4c65] + libpng_jll v1.6.51+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.13.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 37.0s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4774.0 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4223.9 ms ✓ MacroTools 756.5 ms ✓ Reexport 934.0 ms ✓ MappedArrays 879.7 ms ✓ TensorCore 1100.9 ms ✓ ConstructionBase 2027.4 ms ✓ IrrationalConstants 776.6 ms ✓ DataValueInterfaces 809.2 ms ✓ StatsAPI 2240.8 ms ✓ Format 1010.8 ms ✓ Observables 823.2 ms ✓ Twiddle 955.9 ms ✓ RoundingEmulator 835.7 ms ✓ PolygonOps 1148.7 ms ✓ IterTools 1030.1 ms ✓ IntervalSets 814.3 ms ✓ CEnum 881.3 ms ✓ Indexing 1979.3 ms ✓ Combinatorics 1105.8 ms ✓ StringViews 1012.2 ms ✓ Inflate 881.2 ms ✓ Contour 1028.1 ms ✓ TupleTools 1229.2 ms ✓ TranscodingStreams 827.0 ms ✓ LaTeXStrings 1244.0 ms ✓ Statistics 920.4 ms ✓ StaticArraysCore 911.2 ms ✓ StableRNGs 2871.8 ms ✓ AdaptivePredicates 798.2 ms ✓ IfElse 936.1 ms ✓ AutoHashEquals 840.6 ms ✓ PtrArrays 771.6 ms ✓ SimpleBufferStream 1196.7 ms ✓ Grisu 847.5 ms ✓ DataAPI 859.9 ms ✓ SciMLPublic 775.9 ms ✓ RealDot 796.7 ms ✓ CommonWorldInvalidations 1230.2 ms ✓ URIs 854.4 ms ✓ InvertedIndices 978.2 ms ✓ LazyModules 954.9 ms ✓ InverseFunctions 833.3 ms ✓ BitFlags 1113.9 ms ✓ AbstractTrees 1031.9 ms ✓ AbstractFFTs 907.6 ms ✓ EnumX 2106.4 ms ✓ FillArrays 898.0 ms ✓ TriplotBase 798.6 ms ✓ IndirectArrays 2557.4 ms ✓ Bessels 1126.2 ms ✓ Extents 842.3 ms ✓ RangeArrays 1379.2 ms ✓ OrderedCollections 4043.3 ms ✓ ModernGL 882.9 ms ✓ HashArrayMappedTries 1063.4 ms ✓ DocStringExtensions 4675.5 ms ✓ BaseDirs 1158.9 ms ✓ IntervalTrees 1601.4 ms ✓ OffsetArrays 726.0 ms ✓ IteratorInterfaceExtensions 767.8 ms ✓ PackageExtensionCompat 948.4 ms ✓ DelimitedFiles 986.1 ms ✓ NaNMath 1173.9 ms ✓ Requires 1758.9 ms ✓ ConcurrentUtilities 1283.3 ms ✓ SuiteSparse 1414.2 ms ✓ WoodburyMatrices 1131.3 ms ✓ GZip 824.9 ms ✓ Scratch 32346.2 ms ✓ Unitful 1639.9 ms ✓ StructTypes 1275.2 ms ✓ LoggingExtras 1773.7 ms ✓ ProgressMeter 3499.0 ms ✓ UnicodeFun 1125.8 ms ✓ Compat 1787.0 ms ✓ Preferences 1687.6 ms ✓ Hyperscript 2114.8 ms ✓ ExceptionUnwrapping 4472.5 ms ✓ PkgVersion 5358.9 ms ✓ Lazy 1703.5 ms ✓ CommonSubexpressions 4206.9 ms ✓ IRTools 3401.0 ms ✓ SimpleTraits 899.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3709.0 ms ✓ DataValues 810.7 ms ✓ IntervalSets → IntervalSetsRandomExt 786.3 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 1958.7 ms ✓ Dictionaries 930.8 ms ✓ BioGenerics 944.3 ms ✓ CodecZlib 799.5 ms ✓ SignedDistanceFields 1289.7 ms ✓ Statistics → SparseArraysExt 3685.6 ms ✓ FixedPointNumbers 1458.8 ms ✓ Distances 819.2 ms ✓ IntervalSets → IntervalSetsStatisticsExt 884.0 ms ✓ DiffResults 960.9 ms ✓ AliasTables 836.0 ms ✓ Showoff 942.8 ms ✓ Missings 1087.0 ms ✓ Quaternions 868.3 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1685.6 ms ✓ InverseFunctions → InverseFunctionsTestExt 3887.3 ms ✓ OpenSSL 867.7 ms ✓ TransformsBase 4175.7 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1657.4 ms ✓ FillArrays → FillArraysSparseArraysExt 1256.2 ms ✓ FillArrays → FillArraysStatisticsExt 783.2 ms ✓ ScopedValues 1184.5 ms ✓ LogExpFunctions 862.0 ms ✓ PaddedViews 778.7 ms ✓ CircularArrays 793.9 ms ✓ StackViews 789.0 ms ✓ TableTraits 947.1 ms ✓ StridedViews 870.2 ms ✓ Ratios 956.3 ms ✓ Adapt 9225.2 ms ✓ FileIO 1816.7 ms ✓ PDMats 1229.3 ms ✓ SparseInverseSubset 2035.6 ms ✓ AxisAlgorithms 1349.1 ms ✓ FastaIO 1281.3 ms ✓ RelocatableFolders 2183.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 2287.2 ms ✓ Unitful → PrintfExt 2117.0 ms ✓ Unitful → InverseFunctionsUnitfulExt 822.3 ms ✓ Compat → CompatLinearAlgebraExt 982.8 ms ✓ PrecompileTools 1230.7 ms ✓ JLLWrappers 1545.2 ms ✓ AxisArrays 1395.4 ms ✓ SplitApplyCombine 2373.5 ms ✓ NamedArrays 2843.0 ms ✓ ColorTypes 1278.0 ms ✓ Distances → DistancesSparseArraysExt 825.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 976.9 ms ✓ MosaicViews 1764.4 ms ✓ Tables 1842.4 ms ✓ TableTraitsUtils 770.8 ms ✓ StridedViews → StridedViewsPtrArraysExt 1254.0 ms ✓ Strided 912.5 ms ✓ Ratios → RatiosFixedPointNumbersExt 1131.4 ms ✓ ArrayInterface 1245.5 ms ✓ Adapt → AdaptSparseArraysExt 1172.1 ms ✓ GPUArraysCore 854.6 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1459.1 ms ✓ FillArrays → FillArraysPDMatsExt 2865.0 ms ✓ ChainRulesCore 1997.0 ms ✓ FilePathsBase 4001.9 ms ✓ DataStructures 2487.7 ms ✓ BioSymbols 16060.5 ms ✓ SIMD 13458.5 ms ✓ StaticArrays 2948.1 ms ✓ RecipesBase 16372.8 ms ✓ Parsers 5014.6 ms ✓ Static 1358.6 ms ✓ Libffi_jll 1339.1 ms ✓ LZO_jll 1520.5 ms ✓ EarCut_jll 1344.9 ms ✓ Bzip2_jll 1364.6 ms ✓ OpenBLASConsistentFPCSR_jll 1375.4 ms ✓ isoband_jll 1424.6 ms ✓ libinchi_jll 1525.9 ms ✓ XZ_jll 1381.1 ms ✓ Rmath_jll 1376.9 ms ✓ OpenSpecFun_jll 1171.7 ms ✓ Xorg_xtrans_jll 1352.6 ms ✓ Opus_jll 4846.9 ms ✓ IntelOpenMP_jll 1594.4 ms ✓ x265_jll 1643.8 ms ✓ libpng_jll 1494.4 ms ✓ CRlibm_jll 5017.4 ms ✓ oneTBB_jll 1397.8 ms ✓ coordgenlibs_jll 1385.7 ms ✓ Imath_jll 1143.4 ms ✓ EpollShim_jll 1368.1 ms ✓ Libmount_jll 1354.2 ms ✓ libfdk_aac_jll 1391.3 ms ✓ Libuuid_jll 1392.0 ms ✓ FriBidi_jll 1390.8 ms ✓ LERC_jll 1356.8 ms ✓ Xorg_libXau_jll 1386.1 ms ✓ Ogg_jll 1395.4 ms ✓ FFTW_jll 1387.9 ms ✓ LAME_jll 1379.7 ms ✓ Graphite2_jll 1385.3 ms ✓ x264_jll 1363.5 ms ✓ LLVMOpenMP_jll 1336.4 ms ✓ Libiconv_jll 1437.8 ms ✓ MbedTLS_jll 1618.5 ms ✓ libaom_jll 1392.6 ms ✓ Xorg_libXdmcp_jll 1420.9 ms ✓ Giflib_jll 1390.1 ms ✓ Expat_jll 1391.1 ms ✓ JpegTurbo_jll 1235.0 ms ✓ ColorTypes → StyledStringsExt 7898.0 ms ✓ Colors 3780.5 ms ✓ ColorVectorSpace 1520.4 ms ✓ StructArrays 732.8 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1248.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 781.4 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1294.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1111.3 ms ✓ LazyStack 2342.9 ms ✓ ZygoteRules 877.5 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 845.7 ms ✓ Distances → DistancesChainRulesCoreExt 2994.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1256.1 ms ✓ TransmuteDims 795.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2609.6 ms ✓ FilePathsBase → FilePathsBaseTestExt 967.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 1268.6 ms ✓ FilePaths 1526.2 ms ✓ SortingAlgorithms 2768.3 ms ✓ QuadGK 8921.9 ms ✓ BioSequences 20481.4 ms ✓ Automa 3774.6 ms ✓ ArnoldiMethod 1390.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1446.0 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1542.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 5004.4 ms ✓ Rotations 1882.3 ms ✓ Adapt → AdaptStaticArraysExt 1419.7 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 2625.0 ms ✓ PairwiseListMatrices 12697.7 ms ✓ BioStructures 13524.2 ms ✓ JSON3 3633.0 ms ✓ JSON 3759.0 ms ✓ StaticArrayInterface 22597.6 ms ✓ GeometryBasics 1411.7 ms ✓ FreeType2_jll 899.4 ms ✓ Isoband 1414.4 ms ✓ Rmath 4827.4 ms ✓ SpecialFunctions 1125.0 ms ✓ CRlibm  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10074.7 ms ✓ MKL_jll 1472.5 ms ✓ OpenEXR_jll 1440.9 ms ✓ libvorbis_jll 1404.2 ms ✓ Pixman_jll 1065.8 ms ✓ StringEncodings 1461.3 ms ✓ XML2_jll 1473.1 ms ✓ GettextRuntime_jll 1989.1 ms ✓ MbedTLS 1507.5 ms ✓ Xorg_libxcb_jll 1419.3 ms ✓ Dbus_jll 1445.5 ms ✓ Wayland_jll 1442.4 ms ✓ Libtiff_jll 1366.9 ms ✓ libsixel_jll 5682.0 ms ✓ QOI 53296.1 ms ✓ TiffImages 1596.1 ms ✓ Animations 1456.0 ms ✓ Graphics 30973.9 ms ✓ ImageCore 8843.1 ms ✓ ColorSchemes 1317.9 ms ✓ StructArrays → StructArraysSparseArraysExt 910.7 ms ✓ StructArrays → StructArraysLinearAlgebraExt 859.4 ms ✓ StructArrays → StructArraysAdaptExt 1674.5 ms ✓ StructArrays → StructArraysStaticArraysExt 5228.7 ms ✓ StatsBase 3656.7 ms ✓ BioAlignments 21735.0 ms ✓ FASTX 4629.0 ms ✓ NearestNeighbors 9644.9 ms ✓ Graphs 2021.7 ms ✓ Rotations → RotationsRecipesBaseExt 4297.9 ms ✓ Interpolations 19053.0 ms ✓ TensorCast 1650.0 ms ✓ BioStructures → BioStructuresBioSequencesExt 3463.3 ms ✓ ColorBrewer 1037.4 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1498.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 3366.9 ms ✓ Packing 11984.0 ms ✓ GridLayoutBase 10123.9 ms ✓ MakieCore 10708.2 ms ✓ MeshIO 6236.0 ms ✓ ShaderAbstractions 2314.9 ms ✓ FreeType 2233.9 ms ✓ Fontconfig_jll 3901.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2430.0 ms ✓ HypergeometricFunctions 1263.8 ms ✓ DiffRules 1342.1 ms ✓ ColorVectorSpace → SpecialFunctionsExt 5281.9 ms ✓ IntervalArithmetic 6477.4 ms ✓ FFTW 5784.8 ms ✓ OpenEXR 2562.1 ms ✓ YAML 1050.8 ms ✓ LightXML 1505.7 ms ✓ Glib_jll 25282.9 ms ✓ HTTP 1389.4 ms ✓ Xorg_libX11_jll 4225.2 ms ✓ ImageBase 7104.3 ms ✓ PNGFiles 11083.2 ms ✓ Sixel 8926.3 ms ✓ JpegTurbo 2010.8 ms ✓ Colorfy 16830.8 ms ✓ PlotUtils 12048.5 ms ✓ ChainRules 1951.6 ms ✓ PDMats → StatsBaseExt 2328.9 ms ✓ FASTX → BioSequencesExt 3528.3 ms ✓ Interpolations → InterpolationsUnitfulExt 1855.1 ms ✓ BioStructures → BioStructuresBioAlignmentsExt 1219.4 ms ✓ TiledIteration 7860.8 ms ✓ FreeTypeAbstraction 2982.1 ms ✓ StatsFuns 6483.2 ms ✓ ForwardDiff 1459.7 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1410.2 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 1378.5 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 961.5 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 952.3 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt ERROR: LoadError: Inconsistent dictionary sizes Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined]  [3] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined]  [4] macro expansion  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:249 [inlined]  [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:235  [6] ContingencyTable  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:260 [inlined]  [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:266  [8] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [10] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:113  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [12] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/MIToS.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [18] include_string  @ ./loading.jl:3013 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/MIToS.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ Precompilation completed after 949.58s ################################################################################ # Testing # Testing BioMakie Status `/tmp/jl_s6rI7K/Project.toml` [7de43156] BioMakie v0.4.4 [de9282ab] BioStructures v4.7.0 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 ⌅ [e9467ef8] GLMakie v0.11.11 [a09fc81d] ImageCore v0.10.5 ⌃ [51bafb47] MIToS v3.2.3 [37e2e46d] LinearAlgebra v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_s6rI7K/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [15f4f7f2] AutoHashEquals v2.2.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [0e736298] Bessels v0.2.8 [00701ae9] BioAlignments v3.1.0 [47718e42] BioGenerics v0.1.5 [7de43156] BioMakie v0.4.4 [7e6ae17a] BioSequences v3.5.0 [de9282ab] BioStructures v4.7.0 [3c28c6f8] BioSymbols v5.2.0 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [7a955b69] CircularArrays v1.4.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [03fe91ce] Colorfy v1.1.2 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 ⌅ [b46f11dc] CoordRefSystems v0.18.10 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [927a84f5] DelaunayTriangulation v1.6.5 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.10.0 [a0c94c4b] FastaIO v1.1.0 [5789e2e9] FileIO v1.17.1 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.0 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [f7f18e0c] GLFW v3.4.5 ⌅ [e9467ef8] GLMakie v0.11.11 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.13.1 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [47d2ed2b] Hyperscript v0.0.5 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [4e3cecfd] ImageShow v0.3.8 [313cdc1a] Indexing v1.1.1 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [524e6230] IntervalTrees v1.1.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [50d2b5c4] Lazy v0.15.1 [8cdb02fc] LazyModules v0.3.1 [1fad7336] LazyStack v0.1.3 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 ⌃ [51bafb47] MIToS v3.2.3 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.22.10 ⌅ [20f20a25] MakieCore v0.9.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.7 [739be429] MbedTLS v1.1.9 [7269a6da] MeshIO v0.5.3 ⌅ [eacbb407] Meshes v0.53.30 [e1d29d7a] Missings v1.2.0 [66fc600b] ModernGL v1.1.8 ⌅ [6c89ec66] MolecularGraph v0.18.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [86f7a689] NamedArrays v0.10.5 [b8a86587] NearestNeighbors v0.4.24 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [f57f5aa1] PNGFiles v0.4.4 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [f9da4da7] PairwiseListMatrices v0.11.1 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [94ee1d12] Quaternions v0.7.7 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6038ab10] Rotations v1.7.1 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 [431bcebd] SciMLPublic v1.0.0 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [03a91e81] SplitApplyCombine v1.2.3 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [5e0ebb24] Strided v2.3.2 [4db3bf67] StridedViews v0.4.1 [69024149] StringEncodings v0.3.7 [354b36f9] StringViews v1.3.5 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [02d47bb6] TensorCast v0.4.9 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [06e1c1a7] TiledIteration v0.5.0 [3bb67fe8] TranscodingStreams v0.11.3 [28dd2a49] TransformsBase v1.6.0 [24ddb15e] TransmuteDims v0.1.17 [981d1d27] TriplotBase v0.1.0 [9d95972d] TupleTools v1.6.0 [7200193e] Twiddle v1.1.2 [5c2747f8] URIs v1.6.1 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.25.1 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [ee1fde0b] Dbus_jll v1.16.2+0 [5ae413db] EarCut_jll v2.2.4+0 [2702e6a9] EpollShim_jll v0.0.20230411+1 [2e619515] Expat_jll v2.7.3+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.3+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [0656b61e] GLFW_jll v3.4.0+2 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.0+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [856f044c] MKL_jll v2025.2.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll 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v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [d8fb68d0] xkbcommon_jll v1.13.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: Inconsistent dictionary sizes Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/namedarraytypes.jl:71 [inlined]  [3] NamedArray  @ ~/.julia/packages/NamedArrays/f1tMK/src/constructors.jl:43 [inlined]  [4] macro expansion  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:249 [inlined]  [5] MIToS.Information.ContingencyTable{Float64, 2, MIToS.MSA.UngappedAlphabet}(alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:235  [6] ContingencyTable  @ ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:260 [inlined]  [7] MIToS.Information.ContingencyTable(matrix::Matrix{Float64}, alphabet::MIToS.MSA.UngappedAlphabet)  @ MIToS.Information ~/.julia/packages/MIToS/zY3IT/src/Information/ContingencyTables.jl:266  [8] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35  [9] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [10] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:113  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [12] top-level scope  @ ~/.julia/packages/MIToS/zY3IT/src/MIToS.jl:7  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [18] include_string  @ ./loading.jl:3013 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/BLOSUM62.jl:35 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/Information/Information.jl:1 in expression starting at /home/pkgeval/.julia/packages/MIToS/zY3IT/src/MIToS.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ MIToS │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: MIToS Failed to precompile MIToS [51bafb47-8a16-5ded-8b04-24ef4eede0b5] to "/home/pkgeval/.julia/compiled/v1.14/MIToS/jl_wbvutd" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/BioMakie/8NfoU/test/runtests.jl:1 Testing failed after 24.81s ERROR: LoadError: Package BioMakie errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1099.11s: package fails to precompile