Package evaluation to test Zarr on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T19:38:46.115 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.96s ################################################################################ # Installation # Installing Zarr... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [0a941bbe] + Zarr v0.9.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [fbe9abb3] + AWS v1.97.1 [1c724243] + AWSS3 v0.11.4 [dce04be8] + ArgCheck v2.5.0 [31f734f8] + ArrowTypes v2.3.0 [d1d4a3ce] + BitFlags v0.1.9 [a74b3585] + Blosc v0.7.3 [0b6fb165] + ChunkCodecCore v1.0.0 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [6309b1aa] + CodecInflate64 v0.1.3 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [864edb3b] + DataStructures v0.19.3 [b342263e] + DateTimes64 v1.0.1 [3c3547ce] + DiskArrays v0.4.18 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [8f5d6c58] + EzXML v1.2.3 [48062228] + FilePathsBase v0.9.24 [bc5e4493] + GitHub v5.11.0 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [83e8ac13] + IniFile v0.5.1 [0c81fc1b] + InputBuffers v1.1.1 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [8ac3fa9e] + LRUCache v1.6.2 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [78c3b35d] + Mocking v0.8.1 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [20febd7b] + Retry v0.4.1 [7e506255] + ScopedValues v1.5.0 [777ac1f9] + SimpleBufferStream v1.2.0 [2133526b] + SodiumSeal v0.1.1 [ec057cc2] + StructUtils v2.6.0 [2da68c74] + SymDict v0.3.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [228000da] + XMLDict v0.4.1 [0a941bbe] + Zarr v0.9.6 [49080126] + ZipArchives v2.6.0 [0b7ba130] + Blosc_jll v1.21.7+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [02c8fc9c] + XML2_jll v2.15.1+0 [a9144af2] + libsodium_jll v1.0.21+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 5.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 2084.8 ms ✓ EzXML 6693.9 ms ✓ GitHub 1720.0 ms ✓ XMLDict 7490.4 ms ✓ AWS 7216.8 ms ✓ AWSS3 7438.0 ms ✓ Zarr 6 dependencies successfully precompiled in 34 seconds. 87 already precompiled. Precompilation completed after 42.8s ################################################################################ # Testing # Testing Zarr Status `/tmp/jl_NRXHBv/Project.toml` [992eb4ea] CondaPkg v0.2.33 [682c06a0] JSON v1.3.0 [4281f0d9] Minio v0.2.2 [6099a3de] PythonCall v0.9.30 [0a941bbe] Zarr v0.9.6 `~/.julia/packages/Zarr/Ro7PO` [ade2ca70] Dates v1.11.0 [a63ad114] Mmap v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [6462fe0b] Sockets v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NRXHBv/Manifest.toml` [fbe9abb3] AWS v1.97.1 [1c724243] AWSS3 v0.11.4 [dce04be8] ArgCheck v2.5.0 [31f734f8] ArrowTypes v2.3.0 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b342263e] DateTimes64 v1.0.1 [3c3547ce] DiskArrays v0.4.18 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [8f5d6c58] EzXML v1.2.3 [48062228] FilePathsBase v0.9.24 [bc5e4493] GitHub v5.11.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [83e8ac13] IniFile v0.5.1 [0c81fc1b] InputBuffers v1.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [0f8b85d8] JSON3 v1.14.3 [8ac3fa9e] LRUCache v1.6.2 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [4281f0d9] Minio v0.2.2 [78c3b35d] Mocking v0.8.1 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [6099a3de] PythonCall v0.9.30 [20febd7b] Retry v0.4.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [2133526b] SodiumSeal v0.1.1 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.0 [2da68c74] SymDict v0.3.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [e17b2a0c] UnsafePointers v1.0.0 [228000da] XMLDict v0.4.1 [0a941bbe] Zarr v0.9.6 `~/.julia/packages/Zarr/Ro7PO` [49080126] ZipArchives v2.6.0 [0b7ba130] Blosc_jll v1.21.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [02c8fc9c] XML2_jll v2.15.1+0 [a9144af2] libsodium_jll v1.0.21+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 ⌅ [ad83bbfc] minio_jll v1.0.0+1 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Type : ZArray Data type : Vector{Float64} Shape : (2, 3) Chunk Shape : (2, 3) Order : C Read-Only : false Compressor : Zarr.BloscCompressor(0, 5, "lz4", 1) Filters : (Zarr.VLenArrayFilter{Float64}(),) Store type : Dictionary Storage No. bytes : unknown No. bytes stored : 108 Storage ratio : unknown Chunks initialized : 1/1 [ Info: Minio server started ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = top-level scope at storage.jl:154 └ @ Core ~/.julia/packages/Zarr/Ro7PO/test/storage.jl:154 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = #S3Store#22 at s3store.jl:13 [inlined] └ @ Core ~/.julia/packages/Zarr/Ro7PO/src/Storage/s3store.jl:13 ┌ Warning: `global_aws_config(config::AbstractAWSConfig)` is deprecated, use `with_aws_config(config) do ... end` instead to temporarily modify the AWS configuration or `default_aws_config(config)` to set the AWS configuration outside the scope of any `with_aws_config` blocks. │ caller = top-level scope at storage.jl:174 └ @ Core ~/.julia/packages/Zarr/Ro7PO/test/storage.jl:174 ┌ Warning: `global_aws_config()` is deprecated, use `current_aws_config()` instead. │ caller = storefromstring(::Type{S3Store}, s::String, ::Bool) at s3store.jl:80 └ @ Core ~/.julia/packages/Zarr/Ro7PO/src/Storage/s3store.jl:80 [ Info: Listening on: 127.0.0.1:43893, thread id: 1 [ Info: Server on 127.0.0.1:43893 closing [ Info: Listening on: 127.0.0.1:42929, thread id: 1 [ Info: Server on 127.0.0.1:42929 closing CondaPkg Found dependencies: /tmp/jl_NRXHBv/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml CondaPkg Resolving changes + openssl + python + zarr CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_NRXHBv/.CondaPkg ✔ Created /tmp/jl_NRXHBv/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_NRXHBv/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ zarr = ">=2.13,<3" │ │ [dependencies.python] │ version = ">=3.10,<3.14" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_NRXHBv/.CondaPkg/pixi.toml ✔ The default environment has been installed. CondaPkg Found dependencies: /tmp/jl_NRXHBv/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml CondaPkg Resolving changes + numpy CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_NRXHBv/.CondaPkg ✔ Created /tmp/jl_NRXHBv/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_NRXHBv/.CondaPkg/pixi.toml │ [dependencies] │ numpy = ">=2.3.3,<3" │ openssl = ">=3, <3.6" │ zarr = ">=2.13,<3" │ │ [dependencies.python] │ version = ">=3.10,<3.14" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_NRXHBv/.CondaPkg/pixi.toml ✔ The default environment has been installed. Test Summary: | Pass Total Time Zarr | 2586 2586 13m06.9s Testing Zarr tests passed Testing completed after 792.66s PkgEval succeeded after 884.09s