Package evaluation to test XESMF on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T15:31:06.690 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.89s ################################################################################ # Installation # Installing XESMF... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [2e0b0046] + XESMF v0.1.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [992eb4ea] + CondaPkg v0.2.33 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [6099a3de] + PythonCall v0.9.30 [6c6a2e73] + Scratch v1.3.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e17b2a0c] + UnsafePointers v1.0.0 [2e0b0046] + XESMF v0.1.6 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages...  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/XESMF/cFsfs/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml  CondaPkg Resolving changes  + esmf  + esmpy  + openssl  + python  + xesmf  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /home/pkgeval/.julia/environments/v1.14/.CondaPkg ✔ Created /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml  CondaPkg Wrote /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml  │ [dependencies]  │ openssl = ">=3, <3.6"  │  │ [dependencies.esmpy]  │ version = "*"  │ channel = "conda-forge"  │  │ [dependencies.esmf]  │ version = "*"  │ channel = "conda-forge"  │  │ [dependencies.python]  │ version = ">=3.10,<3.14"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [dependencies.xesmf]  │ version = "*"  │ channel = "conda-forge"  │  │ [project]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml ✔ The default environment has been installed. 65804.6 ms ✓ XESMF 1 dependency successfully precompiled in 70 seconds. 55 already precompiled. 1 dependency had output during precompilation: ┌ XESMF │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/XESMF/cFsfs/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml │ CondaPkg Resolving changes │ + esmf │ + esmpy │ + openssl │ + python │ + xesmf │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /home/pkgeval/.julia/environments/v1.14/.CondaPkg │ ✔ Created /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ CondaPkg Wrote /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ │ │ [dependencies.esmpy] │ │ version = "*" │ │ channel = "conda-forge" │ │ │ │ [dependencies.esmf] │ │ version = "*" │ │ channel = "conda-forge" │ │ │ │ [dependencies.python] │ │ version = ">=3.10,<3.14" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [dependencies.xesmf] │ │ version = "*" │ │ channel = "conda-forge" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 76.16s ################################################################################ # Testing # Testing XESMF Status `/tmp/jl_gkIZfB/Project.toml` [992eb4ea] CondaPkg v0.2.33 ⌅ [9e8cae18] Oceananigans v0.100.7 [6099a3de] PythonCall v0.9.30 [2e0b0046] XESMF v0.1.6 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gkIZfB/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [79e6a3ab] Adapt v4.4.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.2 [fa961155] CEnum v0.5.0 [0b6fb165] ChunkCodecCore v1.0.0 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.4 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [21656369] ExpressionExplorer v1.1.3 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [0c68f7d7] GPUArrays v11.3.1 [46192b85] GPUArraysCore v0.2.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [d25df0c9] Inflate v0.1.5 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.6.3 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [63c18a36] KernelAbstractions v0.9.39 [ba0b0d4f] Krylov v0.10.3 [45d422c2] KrylovPreconditioners v0.3.7 [929cbde3] LLVM v9.4.4 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [2679e427] Metis v1.5.0 [0b3b1443] MicroMamba v0.1.14 [46d2c3a1] MuladdMacro v0.2.4 ⌅ [9e8cae18] Oceananigans v0.100.7 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [eebad327] PkgVersion v0.3.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [6099a3de] PythonCall v0.9.30 [94ee1d12] Quaternions v0.7.7 [a3311ec8] ReactantCore v0.1.16 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [6038ab10] Rotations v1.7.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [d496a93d] SeawaterPolynomials v0.3.10 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [6aa5eb33] TaylorSeries v0.20.9 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 [2e0b0046] XESMF v0.1.6 [f5851436] FFTW_jll v3.3.11+0 [e33a78d0] Hwloc_jll v2.12.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.9+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/XESMF/cFsfs/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml CondaPkg Resolving changes + esmf + esmpy + openssl + python + xesmf CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_gkIZfB/.CondaPkg ✔ Created /tmp/jl_gkIZfB/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_gkIZfB/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ │ [dependencies.esmpy] │ version = "*" │ channel = "conda-forge" │ │ [dependencies.esmf] │ version = "*" │ channel = "conda-forge" │ │ [dependencies.python] │ version = ">=3.10,<3.14" │ build = "*cp*" │ channel = "conda-forge" │ │ [dependencies.xesmf] │ version = "*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_gkIZfB/.CondaPkg/pixi.toml ✔ The default environment has been installed. WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. , use IntDisjointSet instead. 1 dependency had output during precompilation: ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/A56vm/src/Oceananigans.jl:125 ┌ Warning: You are using Julia v1.11 or later!" │ Oceananigans is currently tested on Julia v1.10." │ If you find issues with Julia v1.11 or later," │ please report at https://github.com/CliMA/Oceananigans.jl/issues/new └ @ Oceananigans ~/.julia/packages/Oceananigans/A56vm/src/Oceananigans.jl:125 1 dependency had output during precompilation: ┌ Oceananigans → OceananigansXESMFExt │ [Output was shown above] └ /tmp/jl_gkIZfB/.CondaPkg/.pixi/envs/default/lib/python3.13/site-packages/xesmf/backend.py:41: UserWarning: Input array is not F_CONTIGUOUS. Will affect performance. warnings.warn('Input array is not F_CONTIGUOUS. ' 'Will affect performance.') [1764085088.374138] [XESMF-primary-OGg6sKve:197 :0] parser.c:2359 UCX WARN unused environment variables: UCX_MEMTYPE_CACHE (maybe: UCX_MEMTYPE_CACHE?); UCX_ERROR_SIGNALS (maybe: UCX_ERROR_SIGNALS?) [1764085088.374138] [XESMF-primary-OGg6sKve:197 :0] parser.c:2359 UCX WARN (set UCX_WARN_UNUSED_ENV_VARS=n to suppress this warning) Test Summary: | Pass Total Time XESMF.jl Tests | 15 15 4m14.0s Testing XESMF tests passed Testing completed after 330.57s PkgEval succeeded after 476.09s