Package evaluation to test StructuralIdentifiability on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T16:30:39.328


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.55s


################################################################################
# Installation
#

Installing StructuralIdentifiability...
   Resolving package versions...
   Installed ExprTools ───────────────── v0.1.10
   Installed MacroTools ──────────────── v0.5.16
   Installed Combinatorics ───────────── v1.0.3
   Installed OrderedCollections ──────── v1.8.1
   Installed RationalFunctionFields ──── v0.2.2
   Installed DataStructures ──────────── v0.19.3
   Installed PrecompileTools ─────────── v1.3.3
   Installed Atomix ──────────────────── v1.1.2
   Installed FLINT_jll ───────────────── v301.300.102+0
   Installed ProgressMeter ───────────── v1.11.0
   Installed OpenBLAS32_jll ──────────── v0.3.29+0
   Installed IntegerMathUtils ────────── v0.1.3
   Installed TimerOutputs ────────────── v0.5.29
   Installed UnsafeAtomics ───────────── v0.3.0
   Installed ParamPunPam ─────────────── v0.5.5
   Installed JLLWrappers ─────────────── v1.7.1
   Installed Preferences ─────────────── v1.5.0
   Installed Primes ──────────────────── v0.5.7
   Installed RandomExtensions ────────── v0.4.4
   Installed IterTools ───────────────── v1.10.0
   Installed AbstractAlgebra ─────────── v0.47.4
   Installed Nemo ────────────────────── v0.52.3
   Installed StructuralIdentifiability ─ v0.5.17
   Installed Groebner ────────────────── v0.10.0
  Installing 2 artifacts
   Installed artifact OpenBLAS32 10.0 MiB
   Installed artifact FLINT      22.7 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [220ca800] + StructuralIdentifiability v0.5.17
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [c3fe647b] + AbstractAlgebra v0.47.4
  [a9b6321e] + Atomix v1.1.2
  [861a8166] + Combinatorics v1.0.3
  [864edb3b] + DataStructures v0.19.3
  [e2ba6199] + ExprTools v0.1.10
  [0b43b601] + Groebner v0.10.0
  [18e54dd8] + IntegerMathUtils v0.1.3
  [c8e1da08] + IterTools v1.10.0
  [692b3bcd] + JLLWrappers v1.7.1
  [1914dd2f] + MacroTools v0.5.16
  [2edaba10] + Nemo v0.52.3
  [bac558e1] + OrderedCollections v1.8.1
  [3e851597] + ParamPunPam v0.5.5
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.11.0
  [fb686558] + RandomExtensions v0.4.4
  [73480bc8] + RationalFunctionFields v0.2.2
  [220ca800] + StructuralIdentifiability v0.5.17
  [a759f4b9] + TimerOutputs v0.5.29
  [013be700] + UnsafeAtomics v0.3.0
  [e134572f] + FLINT_jll v301.300.102+0
  [656ef2d0] + OpenBLAS32_jll v0.3.29+0
  [56f22d72] + Artifacts v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [fa267f1f] + TOML v1.0.3
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] + GMP_jll v6.3.0+2
  [3a97d323] + MPFR_jll v4.2.2+0
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 10.58s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
   4573.9 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   4244.0 ms  ✓ MacroTools
   3413.1 ms  ✓ UnsafeAtomics
    798.8 ms  ✓ IntegerMathUtils
    923.5 ms  ✓ ExprTools
   1260.7 ms  ✓ IterTools
   1235.4 ms  ✓ OrderedCollections
   2316.4 ms  ✓ Combinatorics
   4376.2 ms  ✓ RandomExtensions
   1791.2 ms  ✓ ProgressMeter
   1084.3 ms  ✓ Preferences
    915.9 ms  ✓ Atomix
   1083.3 ms  ✓ Primes
   3121.6 ms  ✓ TimerOutputs
   3592.1 ms  ✓ DataStructures
   1179.9 ms  ✓ JLLWrappers
    871.7 ms  ✓ PrecompileTools
  23650.5 ms  ✓ AbstractAlgebra
   1395.1 ms  ✓ OpenBLAS32_jll
   1387.5 ms  ✓ FLINT_jll
  31816.1 ms  ✓ Nemo
 139757.6 ms  ✓ Groebner
  10269.9 ms  ✓ ParamPunPam
  10820.4 ms  ✓ RationalFunctionFields
  13467.6 ms  ✓ StructuralIdentifiability
  24 dependencies successfully precompiled in 265 seconds. 11 already precompiled.

Precompilation completed after 281.13s


################################################################################
# Testing
#

     Testing StructuralIdentifiability
      Status `/tmp/jl_IZPHk9/Project.toml`
  [c3fe647b] AbstractAlgebra v0.47.4
  [4c88cf16] Aqua v0.8.14
  [2a0fbf3d] CPUSummary v0.2.7
  [861a8166] Combinatorics v1.0.3
  [864edb3b] DataStructures v0.19.3
  [0b43b601] Groebner v0.10.0
  [c8e1da08] IterTools v1.10.0
  [1914dd2f] MacroTools v0.5.16
  [2edaba10] Nemo v0.52.3
  [3e851597] ParamPunPam v0.5.5
  [aea7be01] PrecompileTools v1.3.3
  [27ebfcd6] Primes v0.5.7
  [73480bc8] RationalFunctionFields v0.2.2
  [276daf66] SpecialFunctions v2.6.1
  [220ca800] StructuralIdentifiability v0.5.17
⌅ [98d24dd4] TestSetExtensions v2.0.0
  [a759f4b9] TimerOutputs v0.5.29
  [ade2ca70] Dates v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [44cfe95a] Pkg v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_IZPHk9/Manifest.toml`
  [c3fe647b] AbstractAlgebra v0.47.4
  [4c88cf16] Aqua v0.8.14
  [a9b6321e] Atomix v1.1.2
  [2a0fbf3d] CPUSummary v0.2.7
  [861a8166] Combinatorics v1.0.3
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.18.1
  [adafc99b] CpuId v0.3.1
  [864edb3b] DataStructures v0.19.3
  [ab62b9b5] DeepDiffs v1.2.0
  [ffbed154] DocStringExtensions v0.9.5
  [e2ba6199] ExprTools v0.1.10
  [0b43b601] Groebner v0.10.0
  [615f187c] IfElse v0.1.1
  [18e54dd8] IntegerMathUtils v0.1.3
  [92d709cd] IrrationalConstants v0.2.6
  [c8e1da08] IterTools v1.10.0
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [1914dd2f] MacroTools v0.5.16
  [2edaba10] Nemo v0.52.3
  [bac558e1] OrderedCollections v1.8.1
  [3e851597] ParamPunPam v0.5.5
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [27ebfcd6] Primes v0.5.7
  [92933f4c] ProgressMeter v1.11.0
  [fb686558] RandomExtensions v0.4.4
  [73480bc8] RationalFunctionFields v0.2.2
  [431bcebd] SciMLPublic v1.0.0
  [276daf66] SpecialFunctions v2.6.1
  [aedffcd0] Static v1.3.1
  [220ca800] StructuralIdentifiability v0.5.17
⌅ [98d24dd4] TestSetExtensions v2.0.0
  [a759f4b9] TimerOutputs v0.5.29
  [013be700] UnsafeAtomics v0.3.0
  [e134572f] FLINT_jll v301.300.102+0
  [656ef2d0] OpenBLAS32_jll v0.3.29+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [781609d7] GMP_jll v6.3.0+2
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [3a97d323] MPFR_jll v4.2.2+0
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.15.0+0
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
   Resolving package versions...
   Installed Glob ───────────────────────────── v1.3.1
   Installed EnzymeCore ─────────────────────── v0.8.17
   Installed FastPower ──────────────────────── v1.2.0
   Installed SIMDTypes ──────────────────────── v0.1.0
   Installed PreallocationTools ─────────────── v0.4.34
   Installed SymbolicUtils ──────────────────── v3.32.0
   Installed DispatchDoctor ─────────────────── v0.4.26
   Installed Optim ──────────────────────────── v1.13.2
   Installed NaNMath ────────────────────────── v1.1.3
   Installed QuadGK ─────────────────────────── v2.11.2
   Installed NonlinearSolveBase ─────────────── v2.4.0
   Installed FastBroadcast ──────────────────── v0.3.5
   Installed StaticArrayInterface ───────────── v1.8.0
   Installed DiffEqCallbacks ────────────────── v4.10.1
   Installed DynamicQuantities ──────────────── v1.10.0
   Installed EnumX ──────────────────────────── v1.0.5
   Installed SCCNonlinearSolve ──────────────── v1.6.0
   Installed BracketingNonlinearSolve ───────── v1.6.0
   Installed NLSolversBase ──────────────────── v7.10.0
   Installed DiffEqBase ─────────────────────── v6.192.0
   Installed Jieko ──────────────────────────── v0.2.1
   Installed JumpProcesses ──────────────────── v9.19.2
   Installed JuliaFormatter ─────────────────── v2.2.0
   Installed Reexport ───────────────────────── v1.2.2
   Installed Missings ───────────────────────── v1.2.0
   Installed InverseFunctions ───────────────── v0.1.17
   Installed LaTeXStrings ───────────────────── v1.4.0
   Installed MaybeInplace ───────────────────── v0.1.4
   Installed RecursiveArrayTools ────────────── v3.39.0
   Installed SortingAlgorithms ──────────────── v1.2.2
   Installed UnPack ─────────────────────────── v1.0.2
   Installed Format ─────────────────────────── v1.3.7
   Installed ADTypes ────────────────────────── v1.19.0
   Installed MLStyle ────────────────────────── v0.4.17
   Installed DiffResults ────────────────────── v1.1.0
   Installed Inflate ────────────────────────── v0.1.5
   Installed URIs ───────────────────────────── v1.6.1
   Installed AbstractTrees ──────────────────── v0.4.5
   Installed Tricks ─────────────────────────── v0.1.13
   Installed FillArrays ─────────────────────── v1.15.0
   Installed TermInterface ──────────────────── v2.0.0
   Installed ArrayInterface ─────────────────── v7.22.0
   Installed ManualMemory ───────────────────── v0.1.8
   Installed ArnoldiMethod ──────────────────── v0.4.0
   Installed StatsBase ──────────────────────── v0.34.8
   Installed SciMLJacobianOperators ─────────── v0.1.11
   Installed CommonSubexpressions ───────────── v0.3.1
   Installed GPUArraysCore ──────────────────── v0.2.0
   Installed LoggingExtras ──────────────────── v1.2.0
   Installed TruncatedStacktraces ───────────── v1.4.0
   Installed LayoutPointers ─────────────────── v0.1.17
   Installed ConcreteStructs ────────────────── v0.2.3
   Installed RandomNumbers ──────────────────── v1.6.0
   Installed SimpleTraits ───────────────────── v0.9.5
   Installed ArrayLayouts ───────────────────── v1.12.1
   Installed PDMats ─────────────────────────── v0.11.36
   Installed Setfield ───────────────────────── v1.1.2
   Installed BlockArrays ────────────────────── v1.9.3
   Installed CompositeTypes ─────────────────── v0.1.4
   Installed ResettableStacks ───────────────── v1.1.1
   Installed CompositionsBase ───────────────── v0.1.2
   Installed Rmath_jll ──────────────────────── v0.5.1+0
   Installed FindFirstFunctions ─────────────── v1.4.2
   Installed CommonSolve ────────────────────── v0.2.4
   Installed ForwardDiff ────────────────────── v1.3.0
   Installed SimpleUnPack ───────────────────── v1.1.0
   Installed DifferentiationInterface ───────── v0.7.12
   Installed Moshi ──────────────────────────── v0.3.7
   Installed AliasTables ────────────────────── v1.1.3
   Installed Combinatorics ──────────────────── v1.0.2
   Installed Ghostscript_jll ────────────────── v9.55.1+0
   Installed Bijections ─────────────────────── v0.2.2
   Installed IteratorInterfaceExtensions ────── v1.0.0
   Installed Unityper ───────────────────────── v0.1.6
   Installed DynamicPolynomials ─────────────── v0.6.4
   Installed BitTwiddlingConvenienceFunctions ─ v0.1.6
   Installed LineSearch ─────────────────────── v0.1.4
   Installed FunctionWrappersWrappers ───────── v0.1.3
   Installed DomainSets ─────────────────────── v0.7.16
   Installed RecipesBase ────────────────────── v1.3.4
   Installed SciMLOperators ─────────────────── v1.13.0
   Installed DataAPI ────────────────────────── v1.16.0
   Installed StaticArrays ───────────────────── v1.9.15
   Installed SciMLStructures ────────────────── v1.7.0
   Installed StaticArraysCore ───────────────── v1.4.4
   Installed TaskLocalValues ────────────────── v0.1.3
   Installed Requires ───────────────────────── v1.3.1
   Installed Symbolics ──────────────────────── v6.57.0
   Installed Latexify ───────────────────────── v0.16.10
   Installed MultivariatePolynomials ────────── v0.5.13
   Installed DiffRules ──────────────────────── v1.15.1
   Installed FunctionWrappers ───────────────── v1.1.3
   Installed JuliaSyntax ────────────────────── v0.4.10
   Installed SciMLBase ──────────────────────── v2.127.0
   Installed OrdinaryDiffEqCore ─────────────── v1.36.0
   Installed Rmath ──────────────────────────── v0.9.0
   Installed FiniteDiff ─────────────────────── v2.29.0
   Installed Distributions ──────────────────── v0.25.122
   Installed FastClosures ───────────────────── v0.3.2
   Installed Unitful ────────────────────────── v1.25.1
   Installed StatsFuns ──────────────────────── v1.5.2
   Installed CloseOpenIntervals ─────────────── v0.1.13
   Installed MutableArithmetics ─────────────── v1.6.7
   Installed Polyester ──────────────────────── v0.7.18
   Installed Accessors ──────────────────────── v0.1.42
   Installed TestItems ──────────────────────── v1.0.0
   Installed JpegTurbo_jll ──────────────────── v3.1.3+0
   Installed ThreadingUtilities ─────────────── v0.5.5
   Installed SymbolicLimits ─────────────────── v0.2.3
   Installed Graphs ─────────────────────────── v1.13.1
   Installed Adapt ──────────────────────────── v4.4.0
   Installed ConstructionBase ───────────────── v1.6.0
   Installed HypergeometricFunctions ────────── v0.3.28
   Installed RuntimeGeneratedFunctions ──────── v0.5.16
   Installed ImplicitDiscreteSolve ──────────── v1.2.0
   Installed PoissonRandom ──────────────────── v0.4.7
   Installed SymbolicIndexingInterface ──────── v0.3.46
   Installed Random123 ──────────────────────── v1.7.1
   Installed Statistics ─────────────────────── v1.11.1
   Installed ModelingToolkit ────────────────── v10.29.0
   Installed PositiveFactorizations ─────────── v0.2.4
   Installed StrideArraysCore ───────────────── v0.5.8
   Installed StatsAPI ───────────────────────── v1.7.1
   Installed OffsetArrays ───────────────────── v1.17.0
   Installed Parameters ─────────────────────── v0.12.3
   Installed ExproniconLite ─────────────────── v0.10.14
   Installed PtrArrays ──────────────────────── v1.3.0
   Installed MuladdMacro ────────────────────── v0.2.4
   Installed SciMLLogging ───────────────────── v1.5.0
   Installed IntervalSets ───────────────────── v0.7.13
   Installed ChainRulesCore ─────────────────── v1.26.0
   Installed DiffEqNoiseProcess ─────────────── v5.24.1
   Installed SimpleNonlinearSolve ───────────── v2.9.0
   Installed LineSearches ───────────────────── v7.4.1
   Installed PolyesterWeave ─────────────────── v0.2.2
   Installed CommonMark ─────────────────────── v0.9.1
  Installing 3 artifacts
   Installed artifact Rmath       121.9 KiB
   Installed artifact JpegTurbo   1.4 MiB
   Installed artifact Ghostscript 31.4 MiB
    Updating `/tmp/jl_IZPHk9/Project.toml`
⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [loaded: v1.0.3]
  [961ee093] + ModelingToolkit v10.29.0
    Updating `/tmp/jl_IZPHk9/Manifest.toml`
  [47edcb42] + ADTypes v1.19.0
  [1520ce14] + AbstractTrees v0.4.5
  [7d9f7c33] + Accessors v0.1.42
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [ec485272] + ArnoldiMethod v0.4.0
  [4fba245c] + ArrayInterface v7.22.0
  [4c555306] + ArrayLayouts v1.12.1
  [e2ed5e7c] + Bijections v0.2.2
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] + BlockArrays v1.9.3
  [70df07ce] + BracketingNonlinearSolve v1.6.0
  [d360d2e6] + ChainRulesCore v1.26.0
  [fb6a15b2] + CloseOpenIntervals v0.1.13
⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [loaded: v1.0.3]
  [a80b9123] + CommonMark v0.9.1
  [38540f10] + CommonSolve v0.2.4
  [bbf7d656] + CommonSubexpressions v0.3.1
  [b152e2b5] + CompositeTypes v0.1.4
  [a33af91c] + CompositionsBase v0.1.2
  [2569d6c7] + ConcreteStructs v0.2.3
  [187b0558] + ConstructionBase v1.6.0
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⌅ [70703baa] + JuliaSyntax v0.4.10
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⌃ [19f23fe9] + SymbolicLimits v0.2.3
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  [4607b0f0] + SuiteSparse
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
    Updating `/tmp/jl_IZPHk9/Project.toml`
⌅ [0c5d862f] + Symbolics v6.57.0
    Manifest No packages added to or removed from `/tmp/jl_IZPHk9/Manifest.toml`
WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs.
, use IntDisjointSet instead.

  1 dependency had output during precompilation:
┌ Graphs
│  WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs.
│  , use IntDisjointSet instead.
└  
[ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0
[ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0

  1 dependency had output during precompilation:
┌ Symbolics → SymbolicsNemoExt
│  [Output was shown above]
└  
[ Info: Testing started
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: a
[ Info: Inputs: 
[ Info: Outputs: y
┌ Warning: New variable c, treating as a scalar parameter
└ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/erhUr/src/pb_representation.jl:94
[ Info: Summary of the model:
[ Info: State variables: x1, x2, x3
[ Info: Parameters: a
[ Info: Inputs: u
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: a
[ Info: Parameters: b
[ Info: Inputs: c
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: a, b
[ Info: Parameters: k1, k2
[ Info: Inputs: c
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x
[ Info: Parameters: a
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x
[ Info: Parameters: a
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x, y
[ Info: Parameters: a, b
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x, y
[ Info: Parameters: a, b
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x, y
[ Info: Parameters: a, b
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x, y
[ Info: Parameters: a, b
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x
[ Info: Parameters: a
[ Info: Inputs: u
[ Info: Outputs: y
  2.179138 seconds (966.77 k allocations: 48.657 MiB, 99.47% compilation time)
  0.001929 seconds (7.04 k allocations: 317.445 KiB)
  0.002105 seconds (10.80 k allocations: 485.453 KiB)
  0.001863 seconds (10.60 k allocations: 475.125 KiB)
  0.002488 seconds (14.53 k allocations: 635.859 KiB)
  0.001465 seconds (7.95 k allocations: 360.430 KiB)
  0.000974 seconds (7.46 k allocations: 300.844 KiB)
 15.100703 seconds (6.70 M allocations: 343.389 MiB, 0.73% gc time, 99.79% compilation time)
[ Info: Summary of the model:
[ Info: State variables: x
[ Info: Parameters: a
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: 
[ Info: Inputs: u
[ Info: Outputs: y
  0.327850 seconds (112.44 k allocations: 6.014 MiB, 98.13% compilation time)
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: 
[ Info: Inputs: u
[ Info: Outputs: y
  0.010788 seconds (9.81 k allocations: 527.188 KiB, 90.04% compilation time)
[ Info: Summary of the model:
[ Info: State variables: x
[ Info: Parameters: a, b
[ Info: Inputs: u
[ Info: Outputs: y

Coefficient extraction for rational functions: Test Failed at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:27
  Expression: Set(C) == Set([x // 1, (y + 3) // 1, y ^ 2 // 1, one(R) // 1, 3 * one(R) // 1, -((x ^ 2 + y ^ 2)) // 1])
   Evaluated: Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[1//3, -1//3*x^2 - 1//3*y^2, 1//3*y^2, 1//3*x, 1, 1//3*y + 1]) == Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[y^2, 3, y + 3, 1, x, -x^2 - y^2])
  Stacktrace:
   [1] top-level scope
     @ ~/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:2
   [2] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined]
   [3] macro expansion
     @ ~/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:27 [inlined]
   [4] macro expansion
     @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined]
[ Info: Summary of the model:
[ Info: State variables: x1, x2, x3
[ Info: Parameters: a
[ Info: Inputs: u
[ Info: Outputs: y1, y2
IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2)
[ Info: Summary of the model:
[ Info: State variables: x0, x1
[ Info: Parameters: a01, a12, a21
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: 
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x0, x1
[ Info: Parameters: a, b, c, d
[ Info: Inputs: u
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: S, I, W, R
[ Info: Parameters: a, bi, bw, gam, k, mu, xi
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x1, x2, x3, x4
[ Info: Parameters: alpha, b, beta, c, delta, gama, sigma
[ Info: Inputs: 
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: b
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: a1, a2, a21
[ Info: Inputs: 
[ Info: Outputs: y1
[ Info: Summary of the model:
[ Info: State variables: x1, x2
[ Info: Parameters: a1, a2, a21
[ Info: Inputs: u
[ Info: Outputs: y1
[ Info: Summary of the model:
[ Info: State variables: x1, x2, x3
[ Info: Parameters: a01, a12, a13, a21, a31
[ Info: Inputs: u
[ Info: Outputs: y
[ Info: Summary of the model:
[ Info: State variables: S, E, In
[ Info: Parameters: N, a, b, nu
[ Info: Inputs: 
[ Info: Outputs: y1, y2
[ Info: Assessing local identifiability
[ Info: Assessing global identifiability
[ Info: Computing IO-equations
[ Info: Computed IO-equations in 0.003250039 seconds
[ Info: Computing Wronskians
[ Info: Computed Wronskians in 6.730173499 seconds
[ Info: Dimensions of the Wronskians [3]
[ Info: Ranks of the Wronskians computed in 0.063907388 seconds
[ Info: Global identifiability assessed in 54.775896765 seconds
[ Info: Assessing local identifiability
[ Info: Assessing global identifiability
[ Info: Functions to check involve states
[ Info: Computing IO-equations
[ Info: Computed IO-equations in 0.002945682 seconds
[ Info: No parameters, so Wronskian computation is not needed
[ Info: Global identifiability assessed in 1.010383593 seconds
[ Info: Assessing local identifiability
[ Info: Assessing global identifiability
[ Info: Global identifiability assessed in 5.868e-5 seconds
[ Info: Assessing local identifiability
[ Info: Assessing global identifiability
[ Info: Functions to check involve states
[ Info: Computing IO-equations
[ Info: Computed IO-equations in 0.033092048 seconds
[ Info: Computing Wronskians
[ Info: Computed Wronskians in 0.529166144 seconds
[ Info: Dimensions of the Wronskians [5]
[ Info: Ranks of the Wronskians computed in 4.5179e-5 seconds
[ Info: Simplifying generating set. Simplification level: standard

⌜ # Computing specializations..     Time: 0:00:15
✓ # Computing specializations..     Time: 0:00:17

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 165 running 1 of 1

signal (10): User defined signal 1
__libc_free at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile.
--trace-compile is enabled during profile collection.
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1246
wait_forever at ./task.jl:1168
jfptr_wait_forever_41502.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2284 [inlined]
start_task at /source/src/task.c:1272
unknown function (ip: (nil)) at (unknown file)


==============================================================
Profile collected. A report will print at the next yield point.
Disabling --trace-compile
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361
Overhead ╎ [+additional indent] Count File:Line  Function
=========================================================
Thread 1 (default) Task 0x00007edaeb786fe0 Total snapshots: 416. Utilization: 0%
   ╎416 @Base/task.jl:1168  wait_forever()
415╎ 416 @Base/task.jl:1246  wait()


[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:457
wait at ./task.jl:1246
wait_forever at ./task.jl:1168
jfptr_wait_forever_41502.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2284 [inlined]
start_task at /source/src/task.c:1272
unknown function (ip: (nil)) at (unknown file)
Allocations: 25771833 (Pool: 25771092; Big: 741); GC: 22

[165] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/identifiability.jl:1
_ZN4llvm14SpillPlacement6updateEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm14SpillPlacement7iterateEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy10growRegionERNS0_20GlobalSplitCandidateE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy33calculateRegionSplitCostAroundRegEtRNS_15AllocationOrderERNS_14BlockFrequencyERjS5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy14tryRegionSplitERKNS_12LiveIntervalERNS_15AllocationOrderERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy8trySplitERKNS_12LiveIntervalERNS_15AllocationOrderERNS_15SmallVectorImplINS_8RegisterEEERKNS_8SmallSetIS7_Lj16ESt4lessIS7_EEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy17selectOrSplitImplERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEERNS_8SmallSetIS5_Lj16ESt4lessIS5_EEERNS_11SmallVectorISt4pairIPS2_NS_10MCRegisterEELj8EEEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy13selectOrSplitERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm12RegAllocBase16allocatePhysRegsEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm8RAGreedy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
_ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line)
operator() at /source/src/jitlayers.cpp:1623
addModule at /source/src/jitlayers.cpp:2114
jl_compile_codeinst_now at /source/src/jitlayers.cpp:682
jl_compile_codeinst_impl at /source/src/jitlayers.cpp:876
jl_compile_method_internal at /source/src/gf.c:3648
_jl_invoke at /source/src/gf.c:4108 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
#simplified_generating_set#126 at /home/pkgeval/.julia/packages/RationalFunctionFields/fEaDA/src/Field.jl:720
simplified_generating_set at /home/pkgeval/.julia/packages/RationalFunctionFields/fEaDA/src/Field.jl:720
unknown function (ip: 0x7e0739c824b1) at (unknown file)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
#initial_identifiable_functions#206 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:86
initial_identifiable_functions at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:86 [inlined]
#check_identifiability#222 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:178
check_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:178 [inlined]
#assess_global_identifiability#237 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:286
assess_global_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:286 [inlined]
macro expansion at ./timing.jl:502 [inlined]
#_assess_identifiability#391 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:174
_assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:140 [inlined]
#387 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:121
with_logstate at ./logging/logging.jl:540
with_logger at ./logging/logging.jl:651 [inlined]
#assess_identifiability#384 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:119 [inlined]
assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:110
unknown function (ip: 0x7e0739c68986) at (unknown file)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2284 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_body at /source/src/interpreter.c:581
eval_body at /source/src/interpreter.c:550
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
eval_body at /source/src/interpreter.c:558
jl_interpret_toplevel_thunk at /source/src/interpreter.c:884
jl_toplevel_eval_flex at /source/src/toplevel.c:742
jl_eval_toplevel_stmts at /source/src/toplevel.c:585
jl_toplevel_eval_flex at /source/src/toplevel.c:683
ijl_toplevel_eval at /source/src/toplevel.c:754
ijl_toplevel_eval_in at /source/src/toplevel.c:799
eval at ./boot.jl:489
include_string at ./loading.jl:3003
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
_include at ./loading.jl:3063
include at ./Base.jl:310
IncludeInto at ./Base.jl:311
unknown function (ip: 0x7e073d7db2c2) at (unknown file)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:153 [inlined]
macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined]
macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:151 [inlined]
macro expansion at ./timing.jl:730 [inlined]
top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:150
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_invoke at /source/src/gf.c:4123
jl_toplevel_eval_flex at /source/src/toplevel.c:731
jl_eval_toplevel_stmts at /source/src/toplevel.c:585
jl_toplevel_eval_flex at /source/src/toplevel.c:683
ijl_toplevel_eval at /source/src/toplevel.c:754
ijl_toplevel_eval_in at /source/src/toplevel.c:799
eval at ./boot.jl:489
include_string at ./loading.jl:3003
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
_include at ./loading.jl:3063
include at ./Base.jl:310
IncludeInto at ./Base.jl:311
jfptr_IncludeInto_76447.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2284 [inlined]
do_call at /source/src/interpreter.c:123
eval_value at /source/src/interpreter.c:243
eval_stmt_value at /source/src/interpreter.c:194 [inlined]
eval_body at /source/src/interpreter.c:679
jl_interpret_toplevel_thunk at /source/src/interpreter.c:884
jl_toplevel_eval_flex at /source/src/toplevel.c:742
jl_eval_toplevel_stmts at /source/src/toplevel.c:585
jl_toplevel_eval_flex at /source/src/toplevel.c:683
ijl_toplevel_eval at /source/src/toplevel.c:754
ijl_toplevel_eval_in at /source/src/toplevel.c:799
eval at ./boot.jl:489
exec_options at ./client.jl:310
_start at ./client.jl:577
jfptr__start_73111.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:4116 [inlined]
ijl_apply_generic at /source/src/gf.c:4313
jl_apply at /source/src/julia.h:2284 [inlined]
true_main at /source/src/jlapi.c:971
jl_repl_entrypoint at /source/src/jlapi.c:1138
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x7e0785de0249) at /lib/x86_64-linux-gnu/libc.so.6
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S
unknown function (ip: (nil)) at (unknown file)
Allocations: 278455043 (Pool: 278450770; Big: 4273); GC: 103

PkgEval terminated after 2738.45s: test duration exceeded the time limit