Package evaluation to test StochasticGene on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-26T01:58:42.777 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.29s ################################################################################ # Installation # Installing StochasticGene... Resolving package versions... Installed CommonWorldInvalidations ──────────── v1.0.0 Installed InlineStrings ─────────────────────── v1.4.5 Installed FastPower ─────────────────────────── v1.2.0 Installed MKL_jll ───────────────────────────── v2025.2.0+0 Installed SIMDTypes ─────────────────────────── v0.1.0 Installed OrderedCollections ────────────────── v1.8.1 Installed MultivariateStats ─────────────────── v0.10.3 Installed Optim ─────────────────────────────── v1.13.2 Installed OrdinaryDiffEqRosenbrock ──────────── v1.18.1 Installed OrdinaryDiffEqExponentialRK ───────── v1.8.0 Installed EnzymeCore ────────────────────────── v0.8.17 Installed OrdinaryDiffEqFIRK ────────────────── v1.16.0 Installed NonlinearSolveSpectralMethods ─────── v1.6.0 Installed CpuId ─────────────────────────────── v0.3.1 Installed PreallocationTools ────────────────── v0.4.34 Installed SentinelArrays ────────────────────── v1.4.8 Installed Compiler ──────────────────────────── v0.1.1 Installed OpenSpecFun_jll ───────────────────── v0.5.6+0 Installed StaticArrayInterface ──────────────── v1.8.0 Installed NaNMath ───────────────────────────── v1.1.3 Installed QuadGK ────────────────────────────── v2.11.2 Installed OrdinaryDiffEqQPRK ────────────────── v1.4.0 Installed LoweredCodeUtils ──────────────────── v3.4.4 Installed NonlinearSolveBase ────────────────── v2.4.0 Installed FastBroadcast ─────────────────────── v0.3.5 Installed Tables ────────────────────────────── v1.12.1 Installed Arpack ────────────────────────────── v0.5.4 Installed Revise ────────────────────────────── v3.12.2 Installed EnumX ─────────────────────────────── v1.0.5 Installed OrdinaryDiffEqLowOrderRK ──────────── v1.6.0 Installed NLSolversBase ─────────────────────── v7.10.0 Installed LinearSolve ───────────────────────── v3.47.0 Installed BracketingNonlinearSolve ──────────── v1.6.0 Installed DiffEqBase ────────────────────────── v6.192.0 Installed Jieko ─────────────────────────────── v0.2.1 Installed Missings ──────────────────────────── v1.2.0 Installed Reexport ──────────────────────────── v1.2.2 Installed InverseFunctions ──────────────────── v0.1.17 Installed Static ────────────────────────────── v1.3.1 Installed RegistryInstances ─────────────────── v0.1.0 Installed Preferences ───────────────────────── v1.5.0 Installed TableTraits ───────────────────────── v1.0.1 Installed NonlinearSolve ────────────────────── v4.12.0 Installed MaybeInplace ──────────────────────── v0.1.4 Installed LaTeXStrings ──────────────────────── v1.4.0 Installed OrdinaryDiffEqNordsieck ───────────── v1.4.0 Installed OrdinaryDiffEqAdamsBashforthMoulton ─ v1.5.0 Installed OrdinaryDiffEqLinear ──────────────── v1.6.0 Installed SortingAlgorithms ─────────────────── v1.2.2 Installed Crayons ───────────────────────────── v4.1.1 Installed RecursiveArrayTools ───────────────── v3.39.0 Installed UnPack ────────────────────────────── v1.0.2 Installed OpenSSH_jll ───────────────────────── v10.2.1+0 Installed ADTypes ───────────────────────────── v1.19.0 Installed DiffResults ───────────────────────── v1.1.0 Installed GenericSchur ──────────────────────── v0.5.6 Installed ManualMemory ──────────────────────── v0.1.8 Installed MacroTools ────────────────────────── v0.5.16 Installed DataStructures ────────────────────── v0.19.3 Installed FillArrays ────────────────────────── v1.15.0 Installed oneTBB_jll ────────────────────────── v2022.0.0+1 Installed AbstractTrees ─────────────────────── v0.4.5 Installed CodecZlib ─────────────────────────── v0.7.8 Installed ExprTools ─────────────────────────── v0.1.10 Installed DelimitedFiles ────────────────────── v1.9.1 Installed SparseMatrixColorings ─────────────── v0.4.23 Installed StatsBase ─────────────────────────── v0.34.8 Installed SciMLJacobianOperators ────────────── v0.1.11 Installed DataValueInterfaces ───────────────── v1.0.0 Installed IntelOpenMP_jll ───────────────────── v2025.2.0+0 Installed ArrayInterface ────────────────────── v7.22.0 Installed LoggingExtras ─────────────────────── v1.2.0 Installed CommonSubexpressions ──────────────── v0.3.1 Installed LayoutPointers ────────────────────── v0.1.17 Installed ConcreteStructs ───────────────────── v0.2.3 Installed Expat_jll ─────────────────────────── v2.7.3+0 Installed GPUArraysCore ─────────────────────── v0.2.0 Installed TruncatedStacktraces ──────────────── v1.4.0 Installed IrrationalConstants ───────────────── v0.2.6 Installed ArrayLayouts ──────────────────────── v1.12.1 Installed OrdinaryDiffEqRKN ─────────────────── v1.5.0 Installed LSODA_jll ─────────────────────────── v0.1.2+0 Installed OrdinaryDiffEqExtrapolation ───────── v1.9.0 Installed IOCapture ─────────────────────────── v1.0.0 Installed OrdinaryDiffEqStabilizedIRK ───────── v1.6.0 Installed Setfield ──────────────────────────── v1.1.2 Installed PooledArrays ──────────────────────── v1.4.3 Installed OrdinaryDiffEqPRK ─────────────────── v1.4.0 Installed PDMats ────────────────────────────── v0.11.36 Installed WorkerUtilities ───────────────────── v1.6.1 Installed NonlinearSolveQuasiNewton ─────────── v1.11.0 Installed DocStringExtensions ───────────────── v0.9.5 Installed Moshi ─────────────────────────────── v0.3.7 Installed OrdinaryDiffEqHighOrderRK ─────────── v1.5.0 Installed CompositionsBase ──────────────────── v0.1.2 Installed ForwardDiff ───────────────────────── v1.3.0 Installed CommonSolve ───────────────────────── v0.2.4 Installed DifferentiationInterface ──────────── v0.7.12 Installed Rmath_jll ─────────────────────────── v0.5.1+0 Installed VersionParsing ────────────────────── v1.3.0 Installed ZMQ ───────────────────────────────── v1.5.1 Installed SimpleUnPack ──────────────────────── v1.1.0 Installed AliasTables ───────────────────────── v1.1.3 Installed OrdinaryDiffEq ────────────────────── v6.103.0 Installed OrdinaryDiffEqStabilizedRK ────────── v1.4.0 Installed BitTwiddlingConvenienceFunctions ──── v0.1.6 Installed LineSearch ────────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ───────── v1.0.0 Installed RecipesBase ───────────────────────── v1.3.4 Installed FunctionWrappersWrappers ──────────── v0.1.3 Installed DataAPI ───────────────────────────── v1.16.0 Installed Krylov ────────────────────────────── v0.10.3 Installed Git_LFS_jll ───────────────────────── v3.7.0+0 Installed SciMLOperators ────────────────────── v1.13.0 Installed OrdinaryDiffEqBDF ─────────────────── v1.10.1 Installed InvertedIndices ───────────────────── v1.3.1 Installed OrdinaryDiffEqSymplecticRK ────────── v1.7.0 Installed Conda ─────────────────────────────── v1.10.3 Installed SciMLStructures ───────────────────── v1.7.0 Installed FastGaussQuadrature ───────────────── v1.1.0 Installed StaticArraysCore ──────────────────── v1.4.4 Installed StaticArrays ──────────────────────── v1.9.15 Installed OrdinaryDiffEqLowStorageRK ────────── v1.7.0 Installed LSODA ─────────────────────────────── v0.7.5 Installed CodeTracking ──────────────────────── v2.0.2 Installed Documenter ────────────────────────── v1.16.1 Installed StringManipulation ────────────────── v0.4.2 Installed AbstractFFTs ──────────────────────── v1.5.0 Installed SciMLPublic ───────────────────────── v1.0.0 Installed OrdinaryDiffEqDifferentiation ─────── v1.16.1 Installed FunctionWrappers ──────────────────── v1.1.3 Installed Requires ──────────────────────────── v1.3.1 Installed OrdinaryDiffEqNonlinearSolve ──────── v1.15.0 Installed LogExpFunctions ───────────────────── v0.3.29 Installed DiffRules ─────────────────────────── v1.15.1 Installed JuliaInterpreter ──────────────────── v0.10.7 Installed SciMLBase ─────────────────────────── v2.127.0 Installed PrettyTables ──────────────────────── v3.1.2 Installed OrdinaryDiffEqCore ────────────────── v1.36.0 Installed Git_jll ───────────────────────────── v2.51.3+0 Installed JSON ──────────────────────────────── v0.21.4 Installed Distributions ─────────────────────── v0.25.122 Installed NonlinearSolveFirstOrder ──────────── v1.10.0 Installed Rmath ─────────────────────────────── v0.9.0 Installed Parsers ───────────────────────────── v2.8.3 Installed Arpack_jll ────────────────────────── v3.5.1+1 Installed OrdinaryDiffEqExplicitRK ──────────── v1.4.0 Installed CSV ───────────────────────────────── v0.10.15 Installed FastClosures ──────────────────────── v0.3.2 Installed FiniteDiff ────────────────────────── v2.29.0 Installed CloseOpenIntervals ────────────────── v0.1.13 Installed Polyester ─────────────────────────── v0.7.18 Installed StatsFuns ─────────────────────────── v1.5.2 Installed libsodium_jll ─────────────────────── v1.0.21+0 Installed ZeroMQ_jll ────────────────────────── v4.3.6+0 Installed OrdinaryDiffEqFeagin ──────────────── v1.4.0 Installed OrdinaryDiffEqIMEXMultistep ───────── v1.7.0 Installed WeakRefStrings ────────────────────── v1.4.2 Installed JLLWrappers ───────────────────────── v1.7.1 Installed IJulia ────────────────────────────── v1.33.0 Installed DataFrames ────────────────────────── v1.8.1 Installed OrdinaryDiffEqSSPRK ───────────────── v1.7.0 Installed OrdinaryDiffEqPDIRK ───────────────── v1.6.0 Installed ThreadingUtilities ────────────────── v0.5.5 Installed OrdinaryDiffEqDefault ─────────────── v1.8.0 Installed OrdinaryDiffEqSDIRK ───────────────── v1.7.0 Installed Accessors ─────────────────────────── v0.1.42 Installed FilePathsBase ─────────────────────── v0.9.24 Installed OrdinaryDiffEqVerner ──────────────── v1.6.0 Installed Adapt ─────────────────────────────── v4.4.0 Installed ExponentialUtilities ──────────────── v1.28.0 Installed HypergeometricFunctions ───────────── v0.3.28 Installed ConstructionBase ──────────────────── v1.6.0 Installed RuntimeGeneratedFunctions ─────────── v0.5.16 Installed SymbolicIndexingInterface ─────────── v0.3.46 Installed Compat ────────────────────────────── v4.18.1 Installed PositiveFactorizations ────────────── v0.2.4 Installed TranscodingStreams ────────────────── v0.11.3 Installed StrideArraysCore ──────────────────── v0.5.8 Installed Statistics ────────────────────────── v1.11.1 Installed PrecompileTools ───────────────────── v1.3.3 Installed LazyArrays ────────────────────────── v2.9.1 Installed StatsAPI ──────────────────────────── v1.7.1 Installed ExproniconLite ────────────────────── v0.10.14 Installed TimerOutputs ──────────────────────── v0.5.29 Installed MarkdownAST ───────────────────────── v0.1.2 Installed ChainRulesCore ────────────────────── v1.26.0 Installed IfElse ────────────────────────────── v0.1.1 Installed CPUSummary ────────────────────────── v0.2.7 Installed Parameters ────────────────────────── v0.12.3 Installed MuladdMacro ───────────────────────── v0.2.4 Installed PtrArrays ─────────────────────────── v1.3.0 Installed SciMLLogging ──────────────────────── v1.5.0 Installed LazilyInitializedFields ───────────── v1.3.0 Installed StochasticGene ────────────────────── v1.5.10 Installed Git ───────────────────────────────── v1.5.0 Installed FFTW_jll ──────────────────────────── v3.3.11+0 Installed SimpleNonlinearSolve ──────────────── v2.9.0 Installed Libiconv_jll ──────────────────────── v1.18.0+0 Installed OrdinaryDiffEqTsit5 ───────────────── v1.5.0 Installed FFTW ──────────────────────────────── v1.10.0 Installed SpecialFunctions ──────────────────── v2.6.1 Installed LineSearches ──────────────────────── v7.4.1 Installed OrdinaryDiffEqFunctionMap ─────────── v1.5.0 Installed PolyesterWeave ────────────────────── v0.2.2 Installed ANSIColoredPrinters ───────────────── v0.0.1 Installing 12 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact LSODA 24.9 KiB Installed artifact Expat 283.3 KiB Installed artifact FFTW 2.2 MiB Installed artifact libsodium 1.6 MiB Installed artifact Arpack 147.2 KiB Installed artifact ZeroMQ 316.1 KiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 48.9 MiB Updating `~/.julia/environments/v1.14/Project.toml` [a2598c62] + StochasticGene v1.5.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [da1fd8a2] + CodeTracking v2.0.2 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [807dbc54] + Compiler v0.1.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [2b5f629d] + DiffEqBase v6.192.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [e30172f5] + Documenter v1.16.1 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [d4d017d3] + ExponentialUtilities v1.28.0 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [442a2c76] + FastGaussQuadrature v1.1.0 [a4df4552] + FastPower v1.2.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c145ed77] + GenericSchur v0.5.6 [d7ba0133] + Git v1.5.0 [34004b35] + HypergeometricFunctions v0.3.28 [7073ff75] + IJulia v1.33.0 [b5f81e59] + IOCapture v1.0.0 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [aa1ae85d] + JuliaInterpreter v0.10.7 [ba0b0d4f] + Krylov v0.10.3 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [0e77f7df] + LazilyInitializedFields v1.3.0 [5078a376] + LazyArrays v2.9.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.1 [7ed4a6bd] + LinearSolve v3.47.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [6f1432cf] + LoweredCodeUtils v3.4.4 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [d0879d2d] + MarkdownAST v0.1.2 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.12.0 [be0214bd] + NonlinearSolveBase v2.4.0 [5959db7a] + NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.11.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [1dea7af3] + OrdinaryDiffEq v6.103.0 [89bda076] + OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] + OrdinaryDiffEqBDF v1.10.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [50262376] + OrdinaryDiffEqDefault v1.8.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] + OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] + OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] + OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] + OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] + OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] + OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] + OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] + OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] + OrdinaryDiffEqLinear v1.6.0 [1344f307] + OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] + OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] + OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] + OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] + OrdinaryDiffEqPRK v1.4.0 [04162be5] + OrdinaryDiffEqQPRK v1.4.0 [af6ede74] + OrdinaryDiffEqRKN v1.5.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] + OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] + OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] + OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] + OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] + OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] + OrdinaryDiffEqVerner v1.6.0 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v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [a2598c62] + StochasticGene v1.5.10 [7792a7ef] + StrideArraysCore v0.5.8 [892a3eda] + StringManipulation v0.4.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [c2297ded] + ZMQ v1.5.1 ⌅ [68821587] + Arpack_jll v3.5.1+1 [2e619515] + Expat_jll v2.7.3+0 [f5851436] + FFTW_jll v3.3.11+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aae0fff6] + LSODA_jll v0.1.2+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [8f1865be] + ZeroMQ_jll v4.3.6+0 [a9144af2] + libsodium_jll v1.0.21+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building IJulia → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/13603b5774231264b3bb795ba1eb6a519f49fc21/build.log` Installation completed after 61.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4649.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4283.6 ms ✓ MacroTools 1717.8 ms ✓ InlineStrings 802.3 ms ✓ Reexport 1147.5 ms ✓ ConstructionBase 2116.8 ms ✓ IrrationalConstants 789.0 ms ✓ DataValueInterfaces 834.7 ms ✓ StatsAPI 846.1 ms ✓ LazilyInitializedFields 875.9 ms ✓ VersionParsing 777.9 ms ✓ CommonSolve 1032.6 ms ✓ TranscodingStreams 775.4 ms ✓ LaTeXStrings 912.7 ms ✓ Statistics 905.9 ms ✓ StaticArraysCore 1301.7 ms ✓ EnzymeCore 847.9 ms ✓ IfElse 849.1 ms ✓ PtrArrays 1500.5 ms ✓ ANSIColoredPrinters 1071.4 ms ✓ ManualMemory 978.2 ms ✓ PositiveFactorizations 649.9 ms ✓ DataAPI 901.1 ms ✓ SciMLPublic 3839.3 ms ✓ ExproniconLite 883.4 ms ✓ CommonWorldInvalidations 1076.0 ms ✓ FastPower 1269.6 ms ✓ InvertedIndices 976.8 ms ✓ InverseFunctions 868.5 ms ✓ CompositionsBase 1138.7 ms ✓ AbstractTrees 823.1 ms ✓ SimpleUnPack 824.6 ms ✓ MuladdMacro 1071.8 ms ✓ AbstractFFTs 882.3 ms ✓ EnumX 1037.2 ms ✓ WorkerUtilities 2167.7 ms ✓ FillArrays 887.4 ms ✓ ExprTools 805.1 ms ✓ UnPack 810.9 ms ✓ ConcreteStructs 1263.3 ms ✓ OrderedCollections 1624.8 ms ✓ FunctionWrappers 1370.6 ms ✓ ADTypes 1165.9 ms ✓ DocStringExtensions 834.4 ms ✓ FastClosures 1613.4 ms ✓ Compiler 822.6 ms ✓ SIMDTypes 760.3 ms ✓ IteratorInterfaceExtensions 1806.0 ms ✓ Crayons 868.6 ms ✓ IOCapture 954.7 ms ✓ DelimitedFiles 13146.8 ms ✓ Krylov 2359.6 ms ✓ GenericSchur 957.1 ms ✓ NaNMath 1099.4 ms ✓ Requires 1210.2 ms ✓ SuiteSparse 1745.4 ms ✓ CpuId 2615.9 ms ✓ SentinelArrays 1066.3 ms ✓ LoggingExtras 1546.7 ms ✓ CodeTracking 1207.9 ms ✓ Compat 1111.9 ms ✓ Preferences 1681.9 ms ✓ CommonSubexpressions 800.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 5412.3 ms ✓ RegistryInstances 948.1 ms ✓ CodecZlib 1290.4 ms ✓ Statistics → SparseArraysExt 873.9 ms ✓ DiffResults 979.5 ms ✓ AliasTables 1805.6 ms ✓ ThreadingUtilities 955.4 ms ✓ Missings 1025.7 ms ✓ PooledArrays 3181.9 ms ✓ Jieko 862.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1668.9 ms ✓ InverseFunctions → InverseFunctionsTestExt 821.6 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 2198.0 ms ✓ MarkdownAST 3950.4 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1546.3 ms ✓ FillArrays → FillArraysSparseArraysExt 1010.2 ms ✓ FillArrays → FillArraysStatisticsExt 3178.7 ms ✓ TimerOutputs 1182.1 ms ✓ RuntimeGeneratedFunctions 1292.4 ms ✓ Parameters 3561.7 ms ✓ DataStructures 795.3 ms ✓ FunctionWrappersWrappers 805.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1816.8 ms ✓ DifferentiationInterface 810.2 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1399.1 ms ✓ LogExpFunctions 798.3 ms ✓ TableTraits 931.4 ms ✓ Adapt 1727.3 ms ✓ PDMats 10219.7 ms ✓ JuliaInterpreter 1321.8 ms ✓ Compat → CompatLinearAlgebraExt 1276.9 ms ✓ PrecompileTools 1528.8 ms ✓ JLLWrappers 1650.9 ms ✓ TruncatedStacktraces 1362.2 ms ✓ SciMLLogging 3027.9 ms ✓ Setfield 15894.7 ms ✓ Moshi 4934.0 ms ✓ Accessors 1122.3 ms ✓ SortingAlgorithms 2445.0 ms ✓ QuadGK 1467.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 997.0 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1777.2 ms ✓ Tables 1159.1 ms ✓ ArrayInterface 1272.3 ms ✓ Adapt → AdaptSparseArraysExt 1213.0 ms ✓ GPUArraysCore 882.5 ms ✓ EnzymeCore → AdaptExt 1425.4 ms ✓ FillArrays → FillArraysPDMatsExt 17552.8 ms ✓ LoweredCodeUtils 2565.9 ms ✓ ChainRulesCore 2110.3 ms ✓ FilePathsBase 3020.4 ms ✓ StringManipulation 13107.1 ms ✓ StaticArrays 2832.0 ms ✓ RecipesBase 16232.1 ms ✓ Parsers 5323.0 ms ✓ Static 12727.6 ms ✓ SparseMatrixColorings 1486.9 ms ✓ libsodium_jll 1423.9 ms ✓ Rmath_jll 1436.7 ms ✓ OpenSpecFun_jll 5179.4 ms ✓ IntelOpenMP_jll 5563.5 ms ✓ oneTBB_jll 1450.4 ms ✓ Arpack_jll 1470.7 ms ✓ Git_LFS_jll 1469.0 ms ✓ FFTW_jll 1503.8 ms ✓ OpenSSH_jll 1462.0 ms ✓ LSODA_jll 1487.7 ms ✓ Libiconv_jll 1434.8 ms ✓ Expat_jll 1979.1 ms ✓ Accessors → TestExt 2614.9 ms ✓ Accessors → LinearAlgebraExt 4565.2 ms ✓ StatsBase 815.1 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2248.5 ms ✓ MaybeInplace 1301.4 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 907.2 ms ✓ SciMLStructures 1833.1 ms ✓ PreallocationTools 881.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 882.3 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt ┌ Warning: precompile directive │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. └ @ Revise ~/.julia/packages/Revise/pBT9G/src/precompile.jl:65 11521.7 ms ✓ Revise 1399.7 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 943.8 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 965.0 ms ✓ ADTypes → ADTypesChainRulesCoreExt 1316.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 3248.2 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 850.3 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2792.8 ms ✓ FilePathsBase → FilePathsBaseTestExt 1554.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 38713.0 ms ✓ PrettyTables 1422.6 ms ✓ StaticArrays → StaticArraysStatisticsExt 1463.8 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1447.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 22480.4 ms ✓ ArrayLayouts 1454.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1419.7 ms ✓ Adapt → AdaptStaticArraysExt 1569.5 ms ✓ Accessors → StaticArraysExt 3845.3 ms ✓ JSON 944.8 ms ✓ InlineStrings → ParsersExt 1393.7 ms ✓ BitTwiddlingConvenienceFunctions 2678.8 ms ✓ CPUSummary 3994.8 ms ✓ StaticArrayInterface 1757.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1448.9 ms ✓ ZeroMQ_jll 1483.1 ms ✓ Rmath 4933.7 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 10478.4 ms ✓ MKL_jll 1434.5 ms ✓ Arpack 1495.2 ms ✓ Git_jll 4760.2 ms ✓ SciMLOperators 1413.3 ms ✓ PDMats → StatsBaseExt 1335.0 ms ✓ FiniteDiff 3655.8 ms ✓ SymbolicIndexingInterface 1314.3 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 40806.1 ms ✓ ExponentialUtilities 4045.0 ms ✓ Revise → DistributedExt 83362.5 ms ✓ DataFrames 3148.8 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 1541.3 ms ✓ Conda 2561.4 ms ✓ WeakRefStrings 1633.4 ms ✓ PolyesterWeave 1481.9 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 1119.4 ms ✓ CloseOpenIntervals 1399.4 ms ✓ LayoutPointers 5124.1 ms ✓ ZMQ 3863.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 4841.9 ms ✓ FastGaussQuadrature 2329.0 ms ✓ HypergeometricFunctions 1324.5 ms ✓ DiffRules 6455.5 ms ✓ FFTW 964.8 ms ✓ Git 1010.7 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1499.3 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 1335.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1207.8 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 975.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3401.7 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 3748.4 ms ✓ RecursiveArrayTools 5036.4 ms ✓ ExponentialUtilities → ExponentialUtilitiesStaticArraysExt 6644.6 ms ✓ LazyArrays 26722.4 ms ✓ CSV 1798.1 ms ✓ StrideArraysCore 15727.3 ms ✓ IJulia 2666.0 ms ✓ StatsFuns 6229.8 ms ✓ ForwardDiff 45365.7 ms ✓ Documenter 1607.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 1176.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 22517.8 ms ✓ SciMLBase 3335.0 ms ✓ LazyArrays → LazyArraysStaticArraysExt 1813.1 ms ✓ Polyester 9532.6 ms ✓ IJulia → IJuliaReviseExt 3448.5 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1019.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 9164.2 ms ✓ Distributions 2123.2 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1284.4 ms ✓ FastPower → FastPowerForwardDiffExt 1527.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1310.1 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1521.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 2968.2 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 3514.6 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 2813.6 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 1871.0 ms ✓ FastBroadcast 3546.8 ms ✓ Distributions → DistributionsTestExt 3031.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 3455.4 ms ✓ MultivariateStats 3906.9 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2188.1 ms ✓ NLSolversBase 18381.7 ms ✓ LinearSolve 6969.5 ms ✓ SciMLJacobianOperators 1947.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 4078.3 ms ✓ LineSearches 5481.1 ms ✓ LinearSolve → LinearSolveEnzymeExt 9282.8 ms ✓ LinearSolve → LinearSolveSparseArraysExt 9230.6 ms ✓ LinearSolve → LinearSolveForwardDiffExt 10359.0 ms ✓ LineSearch 16577.0 ms ✓ NonlinearSolveBase 6543.1 ms ✓ DiffEqBase 5342.2 ms ✓ Optim 2370.6 ms ✓ LineSearch → LineSearchLineSearchesExt 2629.3 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 2764.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2878.4 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 6022.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 2846.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 3927.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 8281.9 ms ✓ BracketingNonlinearSolve 3533.4 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 3808.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 3847.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5750.7 ms ✓ LSODA 9795.6 ms ✓ OrdinaryDiffEqCore 30487.7 ms ✓ NonlinearSolveQuasiNewton 17572.4 ms ✓ NonlinearSolveSpectralMethods 46776.1 ms ✓ NonlinearSolveFirstOrder 3246.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 3291.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 7466.9 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 3710.4 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 3238.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 17825.9 ms ✓ SimpleNonlinearSolve 7021.1 ms ✓ OrdinaryDiffEqStabilizedRK 4684.0 ms ✓ OrdinaryDiffEqFunctionMap 61014.2 ms ✓ OrdinaryDiffEqVerner 6159.9 ms ✓ OrdinaryDiffEqQPRK 6024.2 ms ✓ OrdinaryDiffEqSymplecticRK 8875.6 ms ✓ OrdinaryDiffEqLowOrderRK 5986.4 ms ✓ OrdinaryDiffEqFeagin 7885.6 ms ✓ OrdinaryDiffEqSSPRK 6698.3 ms ✓ OrdinaryDiffEqRKN 6566.8 ms ✓ OrdinaryDiffEqHighOrderRK 5626.6 ms ✓ OrdinaryDiffEqExplicitRK 13035.4 ms ✓ OrdinaryDiffEqTsit5 8001.9 ms ✓ OrdinaryDiffEqLinear 6253.9 ms ✓ OrdinaryDiffEqPRK 8363.9 ms ✓ OrdinaryDiffEqLowStorageRK 11967.8 ms ✓ OrdinaryDiffEqDifferentiation 3502.2 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 6134.0 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 5028.0 ms ✓ OrdinaryDiffEqNordsieck 6898.1 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 34461.3 ms ✓ NonlinearSolve 13264.6 ms ✓ OrdinaryDiffEqExtrapolation 43954.3 ms ✓ OrdinaryDiffEqRosenbrock 13261.7 ms ✓ OrdinaryDiffEqExponentialRK 13711.8 ms ✓ OrdinaryDiffEqNonlinearSolve 12391.1 ms ✓ OrdinaryDiffEqIMEXMultistep 12244.8 ms ✓ OrdinaryDiffEqStabilizedIRK 13762.9 ms ✓ OrdinaryDiffEqPDIRK 15566.4 ms ✓ OrdinaryDiffEqSDIRK 57682.7 ms ✓ OrdinaryDiffEqFIRK 29634.0 ms ✓ OrdinaryDiffEqBDF 73150.6 ms ✓ OrdinaryDiffEqDefault 22282.9 ms ✓ OrdinaryDiffEq 45689.1 ms ✓ StochasticGene 296 dependencies successfully precompiled in 1714 seconds. 39 already precompiled. 2 dependencies had output during precompilation: ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ Revise │ ┌ Warning: precompile directive │ │ precompile(Tuple{mbody.sig.parameters[1], Symbol, Bool, Bool, Iterators.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:skip_include,), Tuple{Bool}}}, typeof(methods_by_execution!), Compiled, MI, Module, Expr}) │ │ failed. Please report an issue in Revise (after checking for duplicates) or remove this directive. │ └ @ Revise ~/.julia/packages/Revise/pBT9G/src/precompile.jl:65 └ Precompilation completed after 1714.8s ################################################################################ # Testing # Testing StochasticGene Status `/tmp/jl_q66JKv/Project.toml` [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [e30172f5] Documenter v1.16.1 [7a1cc6ca] FFTW v1.10.0 [7073ff75] IJulia v1.33.0 ⌅ [682c06a0] JSON v0.21.4 [7f56f5a3] LSODA v0.7.5 [6f286f6a] MultivariateStats v0.10.3 [429524aa] Optim v1.13.2 [1dea7af3] OrdinaryDiffEq v6.103.0 [295af30f] Revise v3.12.2 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.8 [a2598c62] StochasticGene v1.5.10 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.13.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_q66JKv/Manifest.toml` [47edcb42] ADTypes v1.19.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v2.0.2 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.192.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [d4d017d3] ExponentialUtilities v1.28.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [d7ba0133] Git v1.5.0 [34004b35] 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CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Sampling Histogram count: 6774.0 Sampling Sampling Sampling No rate file, set rate to prior initial: [0.01, 0.01, 0.1, 0.12, 0.12, 1.0, 0.0, 0.1, 1.0, 0.1] Sampling ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1484 running 1 of 1 signal (10): User defined signal 1 muladd at ./float.jl:497 [inlined] macro expansion at ./math.jl:95 [inlined] evalpoly at ./math.jl:94 [inlined] expm1b_kernel at ./special/exp.jl:78 [inlined] exp_impl at ./special/exp.jl:216 [inlined] exp at ./special/exp.jl:329 normpdf at /home/pkgeval/.julia/packages/StatsFuns/Gkkox/src/distrs/norm.jl:13 [inlined] normpdf at /home/pkgeval/.julia/packages/StatsFuns/Gkkox/src/distrs/norm.jl:25 [inlined] pdf at /home/pkgeval/.julia/packages/Distributions/psM3H/src/univariates.jl:644 unknown function (ip: 0x765dcb5391de) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 set_b at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:693 _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1646 unknown function (ip: 0x765dcb532e7c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1832 unknown function (ip: 0x765dcbbdb8be) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:486 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:491 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x765dcb542d56) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x765dcb53a93c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_trace#191 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:282 test_fit_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:262 unknown function (ip: 0x765dcbbc1f6f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_76447.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_73111.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x765e1f659249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_41502.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000072385273b1c0 Total snapshots: 591. Utilization: 0% ╎591 @Base/task.jl:1168 wait_forever() 590╎ 591 @Base/task.jl:1246 wait() [1484] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/test/runtests.jl:11 maybe_record_alloc_to_profile at /source/src/gc-alloc-profiler.h:42 [inlined] ijl_gc_small_alloc at /source/src/gc-stock.c:775 set_b at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:693 _ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1646 unknown function (ip: 0x765dcb532e7c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/hmm.jl:1832 unknown function (ip: 0x765dcbbdb8be) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 ll_hmm_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:486 loglikelihood at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/likelihoods.jl:491 [inlined] mhstep at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:552 unknown function (ip: 0x765dcb542d56) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:459 sample at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:450 unknown function (ip: 0x765dcb53a93c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 metropolis_hastings at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:313 run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:128 [inlined] run_mh at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/metropolis_hastings.jl:151 #test_fit_trace#191 at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:282 test_fit_trace at /home/pkgeval/.julia/packages/StochasticGene/iWmSF/src/test.jl:262 unknown function (ip: 0x765dcbbc1f6f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_76447.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_73111.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x765e1f659249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 4725065133 (Pool: 4725063958; Big: 1175); GC: 7846 PkgEval terminated after 2724.36s: test duration exceeded the time limit