Package evaluation to test Moonshine on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T22:18:02.188 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.57s ################################################################################ # Installation # Installing Moonshine... Resolving package versions... Installed Moonshine ─ v0.3.6 Updating `~/.julia/environments/v1.14/Project.toml` [99b31415] + Moonshine v0.3.6 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [6e4b80f9] + BenchmarkTools v1.6.3 [8ce10254] + Bumper v0.7.1 [fa961155] + CEnum v0.5.0 [ae650224] + ChunkSplitters v3.1.2 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [497a8b3b] + DoubleFloats v1.5.0 [e2685f51] + ECOS v1.1.3 [411431e0] + Extents v0.1.6 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [14197337] + GenericLinearAlgebra v0.3.19 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] + Graphs v1.13.1 [87dc4568] + HiGHS v1.20.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.13 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.3 [f4a74d36] + LayeredLayouts v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [299715c1] + MarchingCubes v0.1.11 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.46.0 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 [99b31415] + Moonshine v0.3.6 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [46757867] + NetworkLayout v0.4.10 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [f27b6e38] + Polynomials v4.1.0 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.30 [1fd47b50] + QuadGK v2.11.2 [be4d8f0f] + Quadmath v0.5.13 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [b8865327] + UnicodePlots v3.8.1 [c4a57d5a] + UnsafeArrays v1.0.8 [e17b2a0c] + UnsafePointers v1.0.0 [6e34b625] + Bzip2_jll v1.0.9+0 [c2c64177] + ECOS_jll v200.0.800+0 [5ae413db] + EarCut_jll v2.2.4+0 [8fd58aa0] + HiGHS_jll v1.12.0+0 [d00139f3] + METIS_jll v5.1.3+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.17.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 6.02s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3354.7 ms ✓ Bumper 106944.1 ms ✓ UnicodePlots 8844.2 ms ✓ DoubleFloats 82017.4 ms ✓ MathOptInterface 5706.6 ms ✓ NetworkLayout → NetworkLayoutGraphsExt 8007.2 ms ✓ UnicodePlots → IntervalSetsExt 6774.2 ms ✓ MathOptIIS 66650.3 ms ✓ JuMP 8858.9 ms ✓ ECOS 31632.4 ms ✓ HiGHS 19206.1 ms ✓ LayeredLayouts  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/Moonshine/1V3Ce/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml  CondaPkg Resolving changes  + msprime  + openssl  + python  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /home/pkgeval/.julia/environments/v1.14/.CondaPkg ✔ Created /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml  CondaPkg Wrote /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml  │ [dependencies]  │ msprime = "*"  │ openssl = ">=3, <3.6"  │  │ [dependencies.python]  │ version = ">=3.10,<3.14"  │ build = "*cp*"  │ channel = "conda-forge"  │  │ [project]  │ name = ".CondaPkg"  │ description = "automatically generated by CondaPkg.jl"  │ platforms = ["linux-64"]  │ channel-priority = "strict"  └ channels = ["conda-forge"]  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml ✔ The default environment has been installed. 115563.0 ms ✓ Moonshine 12 dependencies successfully precompiled in 466 seconds. 154 already precompiled. 1 dependency had output during precompilation: ┌ Moonshine │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/Moonshine/1V3Ce/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml │ CondaPkg Resolving changes │ + msprime │ + openssl │ + python │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /home/pkgeval/.julia/environments/v1.14/.CondaPkg │ ✔ Created /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ CondaPkg Wrote /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ │ [dependencies] │ │ msprime = "*" │ │ openssl = ">=3, <3.6" │ │ │ │ [dependencies.python] │ │ version = ">=3.10,<3.14" │ │ build = "*cp*" │ │ channel = "conda-forge" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ description = "automatically generated by CondaPkg.jl" │ │ platforms = ["linux-64"] │ │ channel-priority = "strict" │ └ channels = ["conda-forge"] │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /home/pkgeval/.julia/environments/v1.14/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 458.22s ################################################################################ # Testing # Testing Moonshine Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Updating `/tmp/jl_B0Iv0D/Project.toml` [86223c79] ↑ Graphs v1.13.0 ⇒ v1.13.1 [99b31415] + Moonshine v0.3.6 Updating `/tmp/jl_B0Iv0D/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [6e4b80f9] + BenchmarkTools v1.6.3 [8ce10254] + Bumper v0.7.1 [fa961155] + CEnum v0.5.0 [ae650224] + ChunkSplitters v3.1.2 [523fee87] + CodecBzip2 v0.8.5 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] ↑ Compat v4.18.0 ⇒ v4.18.1 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [497a8b3b] + DoubleFloats v1.5.0 [e2685f51] + ECOS v1.1.3 [411431e0] + Extents v0.1.6 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [14197337] + GenericLinearAlgebra v0.3.19 [5c1252a2] + GeometryBasics v0.5.10 [86223c79] ↑ Graphs v1.13.0 ⇒ v1.13.1 [87dc4568] + HiGHS v1.20.1 [34004b35] + HypergeometricFunctions v0.3.28 [8197267c] + IntervalSets v0.7.13 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.3 [f4a74d36] + LayeredLayouts v0.2.10 [2ab3a3ac] + LogExpFunctions v0.3.29 [299715c1] + MarchingCubes v0.1.11 [8c4f8055] + MathOptIIS v0.1.1 [b8f27783] + MathOptInterface v1.46.0 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 [99b31415] + Moonshine v0.3.6 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [46757867] + NetworkLayout v0.4.10 [90014a1f] + PDMats v0.11.36 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [f27b6e38] + Polynomials v4.1.0 [aea7be01] ↑ PrecompileTools v1.2.1 ⇒ v1.3.3 [21216c6a] ↑ Preferences v1.4.3 ⇒ v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.30 [1fd47b50] + QuadGK v2.11.2 [be4d8f0f] + Quadmath v0.5.13 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [fdea26ae] + SIMD v3.7.2 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] ↑ SimpleTraits v0.9.4 ⇒ v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] ↑ StaticArrays v1.9.14 ⇒ v1.9.15 [1e83bf80] ↑ StaticArraysCore v1.4.3 ⇒ v1.4.4 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [b8865327] + UnicodePlots v3.8.1 [c4a57d5a] + UnsafeArrays v1.0.8 [e17b2a0c] + UnsafePointers v1.0.0 [6e34b625] + Bzip2_jll v1.0.9+0 [c2c64177] + ECOS_jll v200.0.800+0 [5ae413db] + EarCut_jll v2.2.4+0 [8fd58aa0] + HiGHS_jll v1.12.0+0 [d00139f3] + METIS_jll v5.1.3+0 [c8ffd9c3] - MbedTLS_jll v2.28.6+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [4d7b5844] + pixi_jll v0.41.3+0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [9fa8497b] + Future v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] ↑ LibCURL v0.6.4 ⇒ v1.0.0 [37e2e46d] ↑ LinearAlgebra v1.11.0 ⇒ v1.13.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.11.0 ⇒ v1.13.0 [9abbd945] + Profile v1.11.0 [ea8e919c] ↑ SHA v0.7.0 ⇒ v1.0.0 [2f01184e] ↑ SparseArrays v1.11.0 ⇒ v1.13.0 [f489334b] + StyledStrings v1.13.0 [4607b0f0] + SuiteSparse [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v8.6.0+0 ⇒ v8.17.0+0 [e37daf67] ↑ LibGit2_jll v1.7.2+0 ⇒ v1.9.1+0 [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2023.12.12 ⇒ v2025.11.4 [4536629a] ↑ OpenBLAS_jll v0.3.27+1 ⇒ v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] ↑ SuiteSparse_jll v7.7.0+0 ⇒ v7.10.1+0 [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] ↑ libblastrampoline_jll v5.11.0+0 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.59.0+0 ⇒ v1.68.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_B0Iv0D/Project.toml` [4c88cf16] Aqua v0.8.14 [86223c79] Graphs v1.13.1 [852ab1b9] JCheck v1.1.0 [99b31415] Moonshine v0.3.6 [e6cf234a] RandomNumbers v1.6.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_B0Iv0D/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [fbb218c0] BSON v0.3.9 [6e4b80f9] BenchmarkTools v1.6.3 [8ce10254] Bumper v0.7.1 [fa961155] CEnum v0.5.0 [ae650224] ChunkSplitters v3.1.2 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [992eb4ea] CondaPkg v0.2.33 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [497a8b3b] DoubleFloats v1.5.0 [e2685f51] ECOS v1.1.3 [411431e0] Extents v0.1.6 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [14197337] GenericLinearAlgebra v0.3.19 [5c1252a2] GeometryBasics v0.5.10 [86223c79] Graphs v1.13.1 [87dc4568] HiGHS v1.20.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [8197267c] IntervalSets v0.7.13 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [852ab1b9] JCheck v1.1.0 [692b3bcd] JLLWrappers v1.7.1 [9da8a3cd] JLSO v2.7.0 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [4076af6c] JuMP v1.29.3 [f4a74d36] LayeredLayouts v0.2.10 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [299715c1] MarchingCubes v0.1.11 [8c4f8055] MathOptIIS v0.1.1 [b8f27783] MathOptInterface v1.46.0 [f28f55f0] Memento v1.4.1 [6fafb56a] Memoization v0.2.2 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [99b31415] Moonshine v0.3.6 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [46757867] NetworkLayout v0.4.10 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [f27b6e38] Polynomials v4.1.0 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.30 [1fd47b50] QuadGK v2.11.2 [be4d8f0f] Quadmath v0.5.13 [e6cf234a] RandomNumbers v1.6.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [fdea26ae] SIMD v3.7.2 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [88034a9c] StringDistances v0.11.3 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [b8865327] UnicodePlots v3.8.1 [c4a57d5a] UnsafeArrays v1.0.8 [e17b2a0c] UnsafePointers v1.0.0 [6e34b625] Bzip2_jll v1.0.9+0 [c2c64177] ECOS_jll v200.0.800+0 [5ae413db] EarCut_jll v2.2.4+0 [8fd58aa0] HiGHS_jll v1.12.0+0 [d00139f3] METIS_jll v5.1.3+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.13.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/Moonshine/1V3Ce/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/wkBj7/CondaPkg.toml CondaPkg Resolving changes + msprime + openssl + python CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_B0Iv0D/.CondaPkg ✔ Created /tmp/jl_B0Iv0D/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_B0Iv0D/.CondaPkg/pixi.toml │ [dependencies] │ msprime = "*" │ openssl = ">=3, <3.6" │ │ [dependencies.python] │ version = ">=3.10,<3.14" │ build = "*cp*" │ channel = "conda-forge" │ │ [project] │ name = ".CondaPkg" │ description = "automatically generated by CondaPkg.jl" │ platforms = ["linux-64"] │ channel-priority = "strict" └ channels = ["conda-forge"] CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_B0Iv0D/.CondaPkg/pixi.toml ✔ The default environment has been installed. Test Summary: | Pass Total Time Method ambiguity | 1 1 1m07.7s Test Summary: | Pass Total Time Unbound type parameters | 1 1 0.2s Test Summary: | Pass Total Time Undefined exports | 1 1 0.0s Test Summary: | Pass Total Time Compare Project.toml and test/Project.toml | 1 1 0.4s Test Summary: | Pass Total Time Stale dependencies | 1 1 1m07.1s Test Summary: | Pass Total Time Compat bounds | 4 4 0.9s Test Summary: | Pass Total Time Piracy | 1 1 0.2s Test Summary: | Pass Total Time Persistent tasks | 1 1 2m02.1s 259.104721 seconds (19.86 M allocations: 1.278 GiB, 0.67% gc time, 19.75% compilation time: 6% of which was recompilation) WARNING: Method definition var"@test_throws"(LineNumberNode, Module, Any, Any, Any) in module Test at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:876 overwritten in module TestUtils at /home/pkgeval/.julia/packages/Memento/xnHxE/src/memento_test.jl:119. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("f28f55f0-a522-5efc-85c2-fe41dfb9b2d9"), "Memento") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2726  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [4] macro expansion  @ ./loading.jl:2513 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [7] require  @ ./loading.jl:2453 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/JLSO/mhR4H/src/JLSO.jl:41  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [18] include_string  @ ./loading.jl:3013 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/JLSO/mhR4H/src/JLSO.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Memento │ WARNING: Method definition var"@test_throws"(LineNumberNode, Module, Any, Any, Any) in module Test at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:876 overwritten in module TestUtils at /home/pkgeval/.julia/packages/Memento/xnHxE/src/memento_test.jl:119. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ WARNING: Method definition var"@test_throws"(LineNumberNode, Module, Any, Any, Any) in module Test at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:876 overwritten in module TestUtils at /home/pkgeval/.julia/packages/Memento/xnHxE/src/memento_test.jl:119. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. ERROR: LoadError: Precompiled image Base.PkgId(Base.UUID("f28f55f0-a522-5efc-85c2-fe41dfb9b2d9"), "Memento") not available with flags CacheFlags(; use_pkgimages=false, debug_level=1, check_bounds=1, inline=true, opt_level=0) Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2726  [3] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2585  [4] macro expansion  @ ./loading.jl:2513 [inlined]  [5] macro expansion  @ ./lock.jl:376 [inlined]  [6] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2477  [7] require  @ ./loading.jl:2453 [inlined]  [8] eval_import_path  @ ./module.jl:36 [inlined]  [9] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [10] _eval_using  @ ./module.jl:137 [inlined]  [11] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [12] top-level scope  @ ~/.julia/packages/JLSO/mhR4H/src/JLSO.jl:41  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3157  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:3003  [18] include_string  @ ./loading.jl:3013 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [20] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/JLSO/mhR4H/src/JLSO.jl:1 in expression starting at stdin:5 2 dependencies had output during precompilation: ┌ Memento │ WARNING: Method definition var"@test_throws"(LineNumberNode, Module, Any, Any, Any) in module Test at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:876 overwritten in module TestUtils at /home/pkgeval/.julia/packages/Memento/xnHxE/src/memento_test.jl:119. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ JLSO │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: JLSO Failed to precompile JLSO [9da8a3cd-07a3-59c0-a743-3fdc52c30d11] to "/home/pkgeval/.julia/compiled/v1.14/JLSO/jl_5KTNdx" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/JCheck/5CxWZ/src/Quickcheck.jl:9 in expression starting at /home/pkgeval/.julia/packages/JCheck/5CxWZ/src/JCheck.jl:1 in expression starting at /home/pkgeval/.julia/packages/Moonshine/1V3Ce/test/runtests.jl:18 Testing failed after 426.06s ERROR: LoadError: Package Moonshine errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 946.57s: illegal method overwrites during precompilation