Package evaluation to test IsotopicCalc on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T13:32:48.023 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.42s ################################################################################ # Installation # Installing IsotopicCalc... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [5554e927] + IsotopicCalc v0.3.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [5554e927] + IsotopicCalc v0.3.0 [682c06a0] + JSON v1.3.0 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [ec057cc2] + StructUtils v2.6.0 [ade2ca70] + Dates v1.11.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 Installation completed after 4.13s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 5041.8 ms ✓ IsotopicCalc 1 dependency successfully precompiled in 5 seconds. 11 already precompiled. Precompilation completed after 18.49s ################################################################################ # Testing # Testing IsotopicCalc Status `/tmp/jl_c80QDd/Project.toml` [5554e927] IsotopicCalc v0.3.0 [682c06a0] JSON v1.3.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_c80QDd/Manifest.toml` [5554e927] IsotopicCalc v0.3.0 [682c06a0] JSON v1.3.0 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [ec057cc2] StructUtils v2.6.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.13.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 Testing Running tests... ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = parse_formula at isotopicPattern.jl:178 [inlined] └ @ Core ~/.julia/packages/IsotopicCalc/NPmFb/src/isotopicPattern.jl:178 ┌ Warning: `merge(combine::Callable, d::AbstractDict, others::AbstractDict...)` is deprecated, use `mergewith(combine, d, others...)` instead. │ caller = parse_formula at isotopicPattern.jl:178 [inlined] └ @ Core ~/.julia/packages/IsotopicCalc/NPmFb/src/isotopicPattern.jl:178 Matching formulas: C3H6O m/z: 58.041865 ppm: 0.61 Matching formulas: CH4O [M+H]+ m/z: 33.033491 ppm: 15.4 Matching formulas: C3H6O m/z: 58.041865 ppm: 0.61 Matching formulas: C3H6O m/z: 58.041865 ppm: 0.61 CH4N3 m/z: 58.040522 ppm: 23.74 C2H6N2 m/z: 58.053098 ppm: -192.9 C2H4NO m/z: 58.029289 ppm: 217.33 C3H8N m/z: 58.065674 ppm: -409.44 CH2N2O m/z: 58.016713 ppm: 434.14 C4H10 m/z: 58.07825 ppm: -625.89 C2H2O2 m/z: 58.005479 ppm: 627.88 N3O m/z: 58.004137 ppm: 651.05 Formula:  C3H6O.H+ ---------------------------- Mass [amu] Abundance [%] ---------------------------- 59.0491 100.0000 60.0525 3.2447 60.0534 0.0381 60.0554 0.0805 61.0534 0.2055 61.0559 0.0351 62.0567 0.0067 Found 7 isotopic masses for 1.0e-5 abundance limit. Test Summary: | Pass Total Time IsotopicCalc.jl | 91 91 17.4s Testing IsotopicCalc tests passed Testing completed after 27.08s PkgEval succeeded after 70.02s