Package evaluation to test AlgebraicDynamics on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-26T00:24:38.470


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 6.52s


################################################################################
# Installation
#

Installing AlgebraicDynamics...
   Resolving package versions...
┌ Warning: tarball content of url https://api.github.com/repos/AlgebraicJulia/ACSets.jl/tarball/80ca69d6844aa5a1e67338b5362e393007c4c168 does not match git-tree-sha1, expected 80ca69d6844aa5a1e67338b5362e393007c4c168, got UInt8[0xd1, 0x1b, 0xa5, 0x13, 0x1c, 0x10, 0xde, 0x7a, 0x07, 0x55, 0x00, 0x30, 0xe6, 0x80, 0xaf, 0xa0, 0x1e, 0x32, 0xbf, 0xfb]
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:1060
     Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git
   Installed ACSets ─ v0.2.26
    Updating `~/.julia/environments/v1.14/Project.toml`
  [5fd6ff03] + AlgebraicDynamics v0.2.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [227ef7b5] + ACSets v0.2.26
⌅ [79e6a3ab] + Adapt v3.7.2
  [5fd6ff03] + AlgebraicDynamics v0.2.2
  [23cfdc9f] + AlgebraicInterfaces v0.1.4
  [66dad0bd] + AliasTables v1.1.3
⌃ [4fba245c] + ArrayInterface v7.7.1
  [d1d4a3ce] + BitFlags v0.1.9
⌅ [134e5e36] + Catlab v0.16.20
  [d360d2e6] + ChainRulesCore v1.26.0
  [944b1d66] + CodecZlib v0.7.8
  [35d6a980] + ColorSchemes v3.31.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [0fb5dd42] + CompTime v0.1.2
  [34da2185] + Compat v4.18.1
  [a81c6b42] + Compose v0.9.6
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [ffbed154] + DocStringExtensions v0.9.5
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [c87230d0] + FFMPEG v0.4.5
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
⌅ [f6369f11] + ForwardDiff v0.10.39
⌅ [f0ffcf3b] + GATlab v0.1.6
⌅ [46192b85] + GPUArraysCore v0.1.5
  [28b8d3ca] + GR v0.73.19
  [6b9d7cbe] + GeneralizedGenerated v0.3.3
  [42e2da0e] + Grisu v1.0.2
  [cd3eb016] + HTTP v1.10.19
  [92d709cd] + IrrationalConstants v0.2.6
  [c8e1da08] + IterTools v1.10.0
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  [1019f520] + JLFzf v0.1.11
  [692b3bcd] + JLLWrappers v1.7.1
⌅ [682c06a0] + JSON v0.21.4
  [0f8b85d8] + JSON3 v1.14.3
  [b14d175d] + JuliaVariables v0.2.4
  [b964fa9f] + LaTeXStrings v1.4.0
⌃ [2ee39098] + LabelledArrays v1.15.1
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  [2ab3a3ac] + LogExpFunctions v0.3.29
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  [91a5bcdd] + Plots v1.41.2
⌃ [d236fae5] + PreallocationTools v0.4.24
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
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⌅ [08abe8d2] + PrettyTables v2.4.0
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⌅ [731186ca] + RecursiveArrayTools v2.38.10
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 5.59s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
function zip_missing(::Tuple{}, longer)
    map(function (second_one)
#                └──────────┘ ── Invalid signature in function definition
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3157
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3003
 [7] include_string
   @ ./loading.jl:3013 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
in expression starting at stdin:5

Precompilation completed after 14.38s


################################################################################
# Testing
#

     Testing AlgebraicDynamics
      Status `/tmp/jl_Dtppoi/Project.toml`
  [5fd6ff03] AlgebraicDynamics v0.2.2
⌃ [4f99eebe] AlgebraicPetri v0.9.2
⌅ [134e5e36] Catlab v0.16.20
⌃ [bcd4f6db] DelayDiffEq v5.45.1
⌃ [2ee39098] LabelledArrays v1.15.1
⌃ [1dea7af3] OrdinaryDiffEq v6.66.0
⌅ [08abe8d2] PrettyTables v2.4.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_Dtppoi/Manifest.toml`
  [227ef7b5] ACSets v0.2.26
⌅ [47edcb42] ADTypes v0.2.7
  [7d9f7c33] Accessors v0.1.42
⌅ [79e6a3ab] Adapt v3.7.2
  [5fd6ff03] AlgebraicDynamics v0.2.2
  [23cfdc9f] AlgebraicInterfaces v0.1.4
⌃ [4f99eebe] AlgebraicPetri v0.9.2
  [66dad0bd] AliasTables v1.1.3
  [ec485272] ArnoldiMethod v0.4.0
⌃ [4fba245c] ArrayInterface v7.7.1
  [4c555306] ArrayLayouts v1.12.1
  [d1d4a3ce] BitFlags v0.1.9
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
⌃ [2a0fbf3d] CPUSummary v0.2.6
⌅ [134e5e36] Catlab v0.16.20
  [d360d2e6] ChainRulesCore v1.26.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [944b1d66] CodecZlib v0.7.8
  [35d6a980] ColorSchemes v3.31.0
  [3da002f7] ColorTypes v0.12.1
  [c3611d14] ColorVectorSpace v0.11.0
  [5ae59095] Colors v0.13.1
  [861a8166] Combinatorics v1.0.3
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [0fb5dd42] CompTime v0.1.2
  [34da2185] Compat v4.18.1
  [a81c6b42] Compose v0.9.6
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
⌃ [bcd4f6db] DelayDiffEq v5.45.1
  [8bb1440f] DelimitedFiles v1.9.1
⌃ [2b5f629d] DiffEqBase v6.145.2
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
⌅ [f151be2c] EnzymeCore v0.6.6
  [460bff9d] ExceptionUnwrapping v0.1.11
  [d4d017d3] ExponentialUtilities v1.28.0
  [e2ba6199] ExprTools v0.1.10
  [c87230d0] FFMPEG v0.4.5
⌅ [7034ab61] FastBroadcast v0.2.8
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.1.0
  [1a297f60] FillArrays v1.15.0
  [6a86dc24] FiniteDiff v2.29.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
⌅ [f6369f11] ForwardDiff v0.10.39
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
⌅ [f0ffcf3b] GATlab v0.1.6
⌅ [46192b85] GPUArraysCore v0.1.5
  [28b8d3ca] GR v0.73.19
  [6b9d7cbe] GeneralizedGenerated v0.3.3
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        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
function zip_missing(::Tuple{}, longer)
    map(function (second_one)
#                └──────────┘ ── Invalid signature in function definition
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3157
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3003
 [7] include_string
   @ ./loading.jl:3013 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
in expression starting at stdin:5
WARNING: Constructor for type "FinCat" was extended in `FinSets` without explicit qualification or import.
  NOTE: Assumed "FinCat" refers to `FinCats.FinCat`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function FinCat end`.
  Hint: To silence the warning, qualify `FinCat` as `FinCats.FinCat` in the method signature or explicitly `import FinCats: FinCat`.
WARNING: Constructor for type "SetOb" was extended in `FinSets` without explicit qualification or import.
  NOTE: Assumed "SetOb" refers to `Sets.SetOb`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function SetOb end`.
  Hint: To silence the warning, qualify `SetOb` as `Sets.SetOb` in the method signature or explicitly `import Sets: SetOb`.
WARNING: Constructor for type "VarSet" was extended in `CSets` without explicit qualification or import.
  NOTE: Assumed "VarSet" refers to `FinSets.VarSet`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function VarSet end`.
  Hint: To silence the warning, qualify `VarSet` as `FinSets.VarSet` in the method signature or explicitly `import FinSets: VarSet`.
WARNING: Constructor for type "VarFunction" was extended in `CSets` without explicit qualification or import.
  NOTE: Assumed "VarFunction" refers to `FinSets.VarFunction`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function VarFunction end`.
  Hint: To silence the warning, qualify `VarFunction` as `FinSets.VarFunction` in the method signature or explicitly `import FinSets: VarFunction`.
WARNING: Constructor for type "ACSet" was extended in `CSets` without explicit qualification or import.
  NOTE: Assumed "ACSet" refers to `ACSets.ACSet`. This behavior is deprecated and may differ in future versions.
  NOTE: This behavior may have differed in Julia versions prior to 1.12.
  Hint: If you intended to create a new generic function of the same name, use `function ACSet end`.
  Hint: To silence the warning, qualify `ACSet` as `ACSets.ACSet` in the method signature or explicitly `import ACSets: ACSet`.

  1 dependency had output during precompilation:
┌ Catlab
│  [Output was shown above]
└  
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
function zip_missing(::Tuple{}, longer)
    map(function (second_one)
#                └──────────┘ ── Invalid signature in function definition
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3157
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3003
 [7] include_string
   @ ./loading.jl:3013 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
in expression starting at stdin:5
ERROR: LoadError: ParseError:
# Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18
function zip_missing(::Tuple{}, longer)
    map(function (second_one)
#                └──────────┘ ── Invalid signature in function definition
Stacktrace:
 [1] top-level scope
   @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144
 [2] include(mod::Module, _path::String)
   @ Base ./Base.jl:309
 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
   @ Base ./loading.jl:3157
 [4] top-level scope
   @ stdin:5
 [5] eval(m::Module, e::Any)
   @ Core ./boot.jl:489
 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
   @ Base ./loading.jl:3003
 [7] include_string
   @ ./loading.jl:3013 [inlined]
 [8] exec_options(opts::Base.JLOptions)
   @ Base ./client.jl:342
 [9] _start()
   @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ Unzip
│  [Output was shown above]
└  

UWDDynam: Error During Test at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/test/runtests.jl:3
  Got exception outside of a @test
  LoadError: The following 1 package failed to precompile:
  Unzip 
  Failed to precompile Unzip [41fe7b60-77ed-43a1-b4f0-825fd5a5650d] to "/home/pkgeval/.julia/compiled/v1.14/Unzip/jl_z26XB0" (ProcessExited(1)).
  in expression starting at /home/pkgeval/.julia/packages/Plots/ywg93/src/Plots.jl:1
  in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/src/uwd_dynam.jl:1
  in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/src/AlgebraicDynamics.jl:1
  in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/test/uwd_dynam.jl:1
Test Summary: | Error  Total     Time
UWDDynam      |     1      1  2m38.2s
RNG of the outermost testset: Random.Xoshiro(0x9ef447a804261f8a, 0x6d7cd1529af8e53c, 0x724f62ef24e9c8fd, 0xe77553fb5f6b7bb0, 0x772cf62b29921dff)
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/test/runtests.jl:3

Testing failed after 168.87s

ERROR: LoadError: Package AlgebraicDynamics errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 213.12s: package fails to precompile