Package evaluation to test ABBAj on Julia 1.14.0-DEV.1299 (6d6224db99*) started at 2025-11-25T17:11:51.764


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.13s


################################################################################
# Installation
#

Installing ABBAj...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [6b41afa3] + ABBAj v0.1.1
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [6b41afa3] + ABBAj v0.1.1
  [66dad0bd] + AliasTables v1.1.3
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.19.3
  [8bb1440f] + DelimitedFiles v1.9.1
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [1a297f60] + FillArrays v1.15.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [92d709cd] + IrrationalConstants v0.2.6
  [692b3bcd] + JLLWrappers v1.7.1
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.12.0
  [e1d29d7a] + Missings v1.2.0
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.36
  [42b8e9d4] + ParallelKMeans v1.1.0
  [21216c6a] + Preferences v1.5.0
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [79098fc4] + Rmath v0.9.0
  [30f210dd] + ScientificTypesBase v3.0.0
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
  [2913bbd2] + StatsBase v0.34.8
  [4c63d2b9] + StatsFuns v1.5.2
  [c4a57d5a] + UnsafeArrays v1.0.8
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.13.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [8e850b90] + libblastrampoline_jll v5.15.0+0

Installation completed after 4.9s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   5797.9 ms  ✓ ParallelKMeans
   5903.6 ms  ✓ SpecialFunctions
   2959.8 ms  ✓ HypergeometricFunctions
   3173.0 ms  ✓ StatsFuns
  11139.5 ms  ✓ Distributions
   4307.7 ms  ✓ Distributions → DistributionsTestExt
ERROR: LoadError: Could not find something to document in `(ABBA_PARAM_MU, ABBA_PARAM_SCL)`.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] splitexpr(x::Expr)
    @ Base.Docs ./docs/bindings.jl:21
  [3] bindingexpr(x::Any)
    @ Base.Docs ./docs/bindings.jl:15
  [4] objectdoc(__source__::Any, __module__::Any, str::Any, def::Any, expr::Any, sig::Any)
    @ Base.Docs ./docs/Docs.jl:397
  [5] _docm(source::LineNumberNode, mod::Module, meta::Any, x::Any, define::Bool)
    @ Base.Docs ./docs/Docs.jl:728
  [6] docm
    @ ./docs/Docs.jl:687 [inlined]
  [7] docm(source::LineNumberNode, mod::Module, meta::Any, ex::Any)
    @ Base.Docs ./docs/Docs.jl:686
  [8] (::DocStringExtensions.var"#hook!##0#hook!##1"{typeof(DocStringExtensions.template_hook)})(::LineNumberNode, ::Vararg{Any})
    @ DocStringExtensions ~/.julia/packages/DocStringExtensions/zNis6/src/templates.jl:11
  [9] var"@doc"(__source__::LineNumberNode, __module__::Module, x::Vararg{Any})
    @ Core ./boot.jl:766
 [10] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool)
    @ Base ./flfrontend.jl:24
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
 [13] top-level scope
    @ stdin:5
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [16] include_string
    @ ./loading.jl:3013 [inlined]
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [18] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/ABBAj/YDmTu/src/ABBAj.jl:11
in expression starting at /home/pkgeval/.julia/packages/ABBAj/YDmTu/src/ABBAj.jl:1
in expression starting at stdin:5

Precompilation completed after 54.31s


################################################################################
# Testing
#

     Testing ABBAj
      Status `/tmp/jl_gQaSfi/Project.toml`
  [6b41afa3] ABBAj v0.1.1
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.122
  [42b8e9d4] ParallelKMeans v1.1.0
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.13.0
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_gQaSfi/Manifest.toml`
  [6b41afa3] ABBAj v0.1.1
  [66dad0bd] AliasTables v1.1.3
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.19.3
  [8bb1440f] DelimitedFiles v1.9.1
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [1a297f60] FillArrays v1.15.0
  [34004b35] HypergeometricFunctions v0.3.28
  [92d709cd] IrrationalConstants v0.2.6
  [692b3bcd] JLLWrappers v1.7.1
  [2ab3a3ac] LogExpFunctions v0.3.29
  [e80e1ace] MLJModelInterface v1.12.0
  [e1d29d7a] Missings v1.2.0
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.36
  [42b8e9d4] ParallelKMeans v1.1.0
  [21216c6a] Preferences v1.5.0
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [79098fc4] Rmath v0.9.0
  [30f210dd] ScientificTypesBase v3.0.0
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.8
  [4c63d2b9] StatsFuns v1.5.2
  [c4a57d5a] UnsafeArrays v1.0.8
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.13.0
  [f489334b] StyledStrings v1.13.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [8dfed614] Test v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.7+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [8e850b90] libblastrampoline_jll v5.15.0+0
     Testing Running tests...
ERROR: LoadError: Could not find something to document in `(ABBA_PARAM_MU, ABBA_PARAM_SCL)`.
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:44
  [2] splitexpr(x::Expr)
    @ Base.Docs ./docs/bindings.jl:21
  [3] bindingexpr(x::Any)
    @ Base.Docs ./docs/bindings.jl:15
  [4] objectdoc(__source__::Any, __module__::Any, str::Any, def::Any, expr::Any, sig::Any)
    @ Base.Docs ./docs/Docs.jl:397
  [5] _docm(source::LineNumberNode, mod::Module, meta::Any, x::Any, define::Bool)
    @ Base.Docs ./docs/Docs.jl:728
  [6] docm
    @ ./docs/Docs.jl:687 [inlined]
  [7] docm(source::LineNumberNode, mod::Module, meta::Any, ex::Any)
    @ Base.Docs ./docs/Docs.jl:686
  [8] (::DocStringExtensions.var"#hook!##0#hook!##1"{typeof(DocStringExtensions.template_hook)})(::LineNumberNode, ::Vararg{Any})
    @ DocStringExtensions ~/.julia/packages/DocStringExtensions/zNis6/src/templates.jl:11
  [9] var"@doc"(__source__::LineNumberNode, __module__::Module, x::Vararg{Any})
    @ Core ./boot.jl:766
 [10] fl_lower(ex::Expr, mod::Module, filename::String, lineno::UInt64, world::UInt64, warn::Bool)
    @ Base ./flfrontend.jl:24
 [11] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3157
 [13] top-level scope
    @ stdin:5
 [14] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [15] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [16] include_string
    @ ./loading.jl:3013 [inlined]
 [17] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [18] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/ABBAj/YDmTu/src/ABBAj.jl:11
in expression starting at /home/pkgeval/.julia/packages/ABBAj/YDmTu/src/ABBAj.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ ABBAj
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

ABBAj 
Failed to precompile ABBAj [6b41afa3-2ed9-49a7-abc1-b2d458227d0d] to "/home/pkgeval/.julia/compiled/v1.14/ABBAj/jl_Lv85sm" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/ABBAj/YDmTu/test/runtests.jl:1

Testing failed after 17.82s

ERROR: LoadError: Package ABBAj errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 104.84s: package fails to precompile