Package evaluation to test StructuralIdentifiability on Julia 1.14.0-DEV.1284 (37b9484954*) started at 2025-11-23T16:32:11.279 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.19s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Installed ExprTools ───────────────── v0.1.10 Installed OrderedCollections ──────── v1.8.1 Installed Combinatorics ───────────── v1.0.3 Installed MacroTools ──────────────── v0.5.16 Installed RationalFunctionFields ──── v0.2.2 Installed DataStructures ──────────── v0.19.3 Installed PrecompileTools ─────────── v1.3.3 Installed ProgressMeter ───────────── v1.11.0 Installed Atomix ──────────────────── v1.1.2 Installed TimerOutputs ────────────── v0.5.29 Installed IntegerMathUtils ────────── v0.1.3 Installed FLINT_jll ───────────────── v301.300.102+0 Installed OpenBLAS32_jll ──────────── v0.3.29+0 Installed UnsafeAtomics ───────────── v0.3.0 Installed AbstractAlgebra ─────────── v0.47.4 Installed ParamPunPam ─────────────── v0.5.5 Installed JLLWrappers ─────────────── v1.7.1 Installed Preferences ─────────────── v1.5.0 Installed IterTools ───────────────── v1.10.0 Installed StructuralIdentifiability ─ v0.5.17 Installed RandomExtensions ────────── v0.4.4 Installed Primes ──────────────────── v0.5.7 Installed Groebner ────────────────── v0.10.0 Installed Nemo ────────────────────── v0.52.3 Installing 2 artifacts Installed artifact OpenBLAS32 10.0 MiB Installed artifact FLINT 22.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [220ca800] + StructuralIdentifiability v0.5.17 Updating `~/.julia/environments/v1.14/Manifest.toml` [c3fe647b] + AbstractAlgebra v0.47.4 [a9b6321e] + Atomix v1.1.2 [861a8166] + Combinatorics v1.0.3 [864edb3b] + DataStructures v0.19.3 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.10.0 [18e54dd8] + IntegerMathUtils v0.1.3 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [2edaba10] + Nemo v0.52.3 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.5 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [fb686558] + RandomExtensions v0.4.4 [73480bc8] + RationalFunctionFields v0.2.2 [220ca800] + StructuralIdentifiability v0.5.17 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 [e134572f] + FLINT_jll v301.300.102+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [3a97d323] + MPFR_jll v4.2.2+0 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 10.6s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4625.2 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4432.4 ms ✓ MacroTools 3478.9 ms ✓ UnsafeAtomics 850.1 ms ✓ IntegerMathUtils 925.0 ms ✓ ExprTools 1178.7 ms ✓ IterTools 1249.3 ms ✓ OrderedCollections 2165.5 ms ✓ Combinatorics 4465.7 ms ✓ RandomExtensions 1798.6 ms ✓ ProgressMeter 1161.9 ms ✓ Preferences 965.9 ms ✓ Atomix 1189.2 ms ✓ Primes 3281.8 ms ✓ TimerOutputs 3566.6 ms ✓ DataStructures 1225.4 ms ✓ JLLWrappers 914.2 ms ✓ PrecompileTools 24133.7 ms ✓ AbstractAlgebra 1440.9 ms ✓ OpenBLAS32_jll 1577.7 ms ✓ FLINT_jll 33704.0 ms ✓ Nemo 133149.3 ms ✓ Groebner 10516.5 ms ✓ ParamPunPam 10665.2 ms ✓ RationalFunctionFields 13277.4 ms ✓ StructuralIdentifiability 24 dependencies successfully precompiled in 261 seconds. 11 already precompiled. Precompilation completed after 277.44s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_X4FRrB/Project.toml` [c3fe647b] AbstractAlgebra v0.47.4 [4c88cf16] Aqua v0.8.14 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.19.3 [0b43b601] Groebner v0.10.0 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.52.3 [3e851597] ParamPunPam v0.5.5 [aea7be01] PrecompileTools v1.3.3 [27ebfcd6] Primes v0.5.7 [73480bc8] RationalFunctionFields v0.2.2 [276daf66] SpecialFunctions v2.6.1 [220ca800] StructuralIdentifiability v0.5.17 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_X4FRrB/Manifest.toml` [c3fe647b] AbstractAlgebra v0.47.4 [4c88cf16] Aqua v0.8.14 [a9b6321e] Atomix v1.1.2 [2a0fbf3d] CPUSummary v0.2.7 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.19.3 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.10.0 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.3 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [2edaba10] Nemo v0.52.3 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.5 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [fb686558] RandomExtensions v0.4.4 [73480bc8] RationalFunctionFields v0.2.2 [431bcebd] SciMLPublic v1.0.0 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [220ca800] StructuralIdentifiability v0.5.17 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 [e134572f] FLINT_jll v301.300.102+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Resolving package versions... Installed Glob ───────────────────────────── v1.3.1 Installed FastPower ──────────────────────── v1.2.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed EnzymeCore ─────────────────────── v0.8.17 Installed PreallocationTools ─────────────── v0.4.34 Installed SymbolicUtils ──────────────────── v3.32.0 Installed DispatchDoctor ─────────────────── v0.4.26 Installed Optim ──────────────────────────── v1.13.2 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed NaNMath ────────────────────────── v1.1.3 Installed NonlinearSolveBase ─────────────── v2.4.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed DiffEqCallbacks ────────────────── v4.10.1 Installed DynamicQuantities ──────────────── v1.10.0 Installed EnumX ──────────────────────────── v1.0.5 Installed BracketingNonlinearSolve ───────── v1.6.0 Installed NLSolversBase ──────────────────── v7.10.0 Installed SCCNonlinearSolve ──────────────── v1.6.0 Installed DiffEqBase ─────────────────────── v6.192.0 Installed Jieko ──────────────────────────── v0.2.1 Installed JumpProcesses ──────────────────── v9.19.1 Installed InverseFunctions ───────────────── v0.1.17 Installed Reexport ───────────────────────── v1.2.2 Installed Missings ───────────────────────── v1.2.0 Installed LaTeXStrings ───────────────────── v1.4.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed SortingAlgorithms ──────────────── v1.2.2 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed RecursiveArrayTools ────────────── v3.39.0 Installed JuliaFormatter ─────────────────── v2.2.0 Installed ADTypes ────────────────────────── v1.19.0 Installed Inflate ────────────────────────── v0.1.5 Installed URIs ───────────────────────────── v1.6.1 Installed ManualMemory ───────────────────── v0.1.8 Installed TermInterface ──────────────────── v2.0.0 Installed DiffResults ────────────────────── v1.1.0 Installed MLStyle ────────────────────────── v0.4.17 Installed Tricks ─────────────────────────── v0.1.13 Installed AbstractTrees ──────────────────── v0.4.5 Installed FillArrays ─────────────────────── v1.15.0 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed SciMLJacobianOperators ─────────── v0.1.11 Installed ArrayInterface ─────────────────── v7.22.0 Installed LoggingExtras ──────────────────── v1.2.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed CommonSubexpressions ───────────── v0.3.1 Installed StatsBase ──────────────────────── v0.34.8 Installed RandomNumbers ──────────────────── v1.6.0 Installed ConcreteStructs ────────────────── v0.2.3 Installed TruncatedStacktraces ───────────── v1.4.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed ArrayLayouts ───────────────────── v1.12.1 Installed SimpleTraits ───────────────────── v0.9.5 Installed Setfield ───────────────────────── v1.1.2 Installed BlockArrays ────────────────────── v1.9.3 Installed PDMats ─────────────────────────── v0.11.36 Installed CompositeTypes ─────────────────── v0.1.4 Installed ResettableStacks ───────────────── v1.1.1 Installed FindFirstFunctions ─────────────── v1.4.2 Installed CompositionsBase ───────────────── v0.1.2 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed ForwardDiff ────────────────────── v1.3.0 Installed CommonSolve ────────────────────── v0.2.4 Installed Moshi ──────────────────────────── v0.3.7 Installed SimpleUnPack ───────────────────── v1.1.0 Installed DifferentiationInterface ───────── v0.7.12 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed Unityper ───────────────────────── v0.1.6 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed LineSearch ─────────────────────── v0.1.4 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed Bijections ─────────────────────── v0.2.2 Installed Combinatorics ──────────────────── v1.0.2 Installed DynamicPolynomials ─────────────── v0.6.4 Installed RecipesBase ────────────────────── v1.3.4 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed DataAPI ────────────────────────── v1.16.0 Installed SciMLOperators ─────────────────── v1.13.0 Installed SciMLStructures ────────────────── v1.7.0 Installed TaskLocalValues ────────────────── v0.1.3 Installed StaticArrays ───────────────────── v1.9.15 Installed StaticArraysCore ───────────────── v1.4.4 Installed DomainSets ─────────────────────── v0.7.16 Installed Requires ───────────────────────── v1.3.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed DiffRules ──────────────────────── v1.15.1 Installed MultivariatePolynomials ────────── v0.5.13 Installed Latexify ───────────────────────── v0.16.10 Installed JuliaSyntax ────────────────────── v0.4.10 Installed OrdinaryDiffEqCore ─────────────── v1.36.0 Installed Rmath ──────────────────────────── v0.9.0 Installed Symbolics ──────────────────────── v6.57.0 Installed SciMLBase ──────────────────────── v2.127.0 Installed FastClosures ───────────────────── v0.3.2 Installed FiniteDiff ─────────────────────── v2.29.0 Installed Distributions ──────────────────── v0.25.122 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed Polyester ──────────────────────── v0.7.18 Installed Unitful ────────────────────────── v1.25.1 Installed ThreadingUtilities ─────────────── v0.5.5 Installed TestItems ──────────────────────── v1.0.0 Installed SymbolicLimits ─────────────────── v0.2.3 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed MutableArithmetics ─────────────── v1.6.7 Installed Accessors ──────────────────────── v0.1.42 Installed Graphs ─────────────────────────── v1.13.1 Installed Adapt ──────────────────────────── v4.4.0 Installed RuntimeGeneratedFunctions ──────── v0.5.16 Installed ConstructionBase ───────────────── v1.6.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ImplicitDiscreteSolve ──────────── v1.2.0 Installed PoissonRandom ──────────────────── v0.4.7 Installed SymbolicIndexingInterface ──────── v0.3.46 Installed Random123 ──────────────────────── v1.7.1 Installed StrideArraysCore ───────────────── v0.5.8 Installed PositiveFactorizations ─────────── v0.2.4 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed ExproniconLite ─────────────────── v0.10.14 Installed ModelingToolkit ────────────────── v10.29.0 Installed Parameters ─────────────────────── v0.12.3 Installed OffsetArrays ───────────────────── v1.17.0 Installed MuladdMacro ────────────────────── v0.2.4 Installed ChainRulesCore ─────────────────── v1.26.0 Installed PtrArrays ──────────────────────── v1.3.0 Installed SciMLLogging ───────────────────── v1.5.0 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed IntervalSets ───────────────────── v0.7.13 Installed SimpleNonlinearSolve ───────────── v2.9.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed LineSearches ───────────────────── v7.4.1 Installed CommonMark ─────────────────────── v0.9.1 Installing 3 artifacts Installed artifact Rmath 121.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Ghostscript 31.4 MiB Updating `/tmp/jl_X4FRrB/Project.toml` ⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [loaded: v1.0.3] [961ee093] + ModelingToolkit v10.29.0 Updating `/tmp/jl_X4FRrB/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.1 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.6.0 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] ↓ Combinatorics v1.0.3 ⇒ v1.0.2 [loaded: v1.0.3] [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [2b5f629d] + DiffEqBase v6.192.0 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [8d63f2c5] + DispatchDoctor v0.4.26 [31c24e10] + Distributions v0.25.122 [5b8099bc] + DomainSets v0.7.16 [7c1d4256] + DynamicPolynomials v0.6.4 [06fc5a27] + DynamicQuantities v1.10.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [1a297f60] + FillArrays v1.15.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff 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SciMLBase v2.127.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.13.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.57.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [f50d1b31] + Rmath_jll v0.5.1+0 [9fa8497b] + Future v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Updating `/tmp/jl_X4FRrB/Project.toml` ⌅ [0c5d862f] + Symbolics v6.57.0 Manifest No packages added to or removed from `/tmp/jl_X4FRrB/Manifest.toml` WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. , use IntDisjointSet instead. 1 dependency had output during precompilation: ┌ Graphs │ WARNING: importing deprecated binding DataStructures.IntDisjointSets into Graphs. │ , use IntDisjointSet instead. └ [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 [ Info: Assuming ((1//128)*(√((5120//1)*(a^4)) - (80//1)*(a^2))) != 0 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/erhUr/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.301249 seconds (960.86 k allocations: 48.341 MiB, 99.48% compilation time) 0.001858 seconds (6.94 k allocations: 304.297 KiB) 0.002084 seconds (10.80 k allocations: 485.000 KiB) 0.002057 seconds (10.73 k allocations: 478.172 KiB) 0.002781 seconds (14.53 k allocations: 636.109 KiB) 0.001540 seconds (7.95 k allocations: 360.852 KiB) 0.001164 seconds (7.45 k allocations: 300.766 KiB) 15.808995 seconds (6.69 M allocations: 343.056 MiB, 0.96% gc time, 99.79% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.304721 seconds (112.44 k allocations: 6.014 MiB, 98.00% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.011448 seconds (9.81 k allocations: 520.398 KiB, 89.18% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y Coefficient extraction for rational functions: Test Failed at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:27 Expression: Set(C) == Set([x // 1, (y + 3) // 1, y ^ 2 // 1, one(R) // 1, 3 * one(R) // 1, -((x ^ 2 + y ^ 2)) // 1]) Evaluated: Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[1//3, -1//3*x^2 - 1//3*y^2, 1//3*y^2, 1//3*x, 1, 1//3*y + 1]) == Set(AbstractAlgebra.Generic.FracFieldElem{QQMPolyRingElem}[y^2, 3, y + 3, 1, x, -x^2 - y^2]) Stacktrace: [1] top-level scope @ ~/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:2 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] [3] macro expansion @ ~/.julia/packages/StructuralIdentifiability/erhUr/test/extract_coefficients.jl:27 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:753 [inlined] [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1, y1(t)_2 => -y1(t)_0 + y1(t)_2) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003192679 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 7.374210661 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 0.067607721 seconds [ Info: Global identifiability assessed in 56.146617072 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003146349 seconds [ Info: No parameters, so Wronskian computation is not needed [ Info: Global identifiability assessed in 1.021962382 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Global identifiability assessed in 4.922e-5 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.034219062 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.516515301 seconds [ Info: Dimensions of the Wronskians [5] [ Info: Ranks of the Wronskians computed in 3.53e-5 seconds [ Info: Simplifying generating set. Simplification level: standard ⌜ # Computing specializations.. Time: 0:00:15 ✓ # Computing specializations.. Time: 0:00:18 [ Info: Search for polynomial generators concluded in 13.91649244 [ Info: Selecting generators in 0.015403761 [ Info: Inclusion checked with probability 0.9955 in 0.072938625 seconds [ Info: Global identifiability assessed in 108.114759634 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 1.603515495 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 1.789383457 seconds [ Info: Dimensions of the Wronskians [676] [ Info: Ranks of the Wronskians computed in 0.126012551 seconds ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 162 running 1 of 1 signal (10): User defined signal 1 userefs at ./../usr/share/julia/Compiler/src/ssair/ir.jl:644 [inlined] scan_entry! at ./../usr/share/julia/Compiler/src/ssair/slot2ssa.jl:28 scan_slot_def_use at ./../usr/share/julia/Compiler/src/ssair/slot2ssa.jl:45 slot2reg at ./../usr/share/julia/Compiler/src/optimize.jl:1330 [inlined] run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1035 run_passes_ipo_safe at ./../usr/share/julia/Compiler/src/optimize.jl:1048 [inlined] optimize at ./../usr/share/julia/Compiler/src/optimize.jl:1021 jfptr_optimize_87333.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 finish_nocycle at ./../usr/share/julia/Compiler/src/typeinfer.jl:278 jfptr_finish_nocycle_87996.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4502 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1340 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:889 abstract_call_method_with_const_args at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:858 [inlined] handle1 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:177 infercalls at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:247 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:328 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2796 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2904 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2897 [inlined] abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3057 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3075 [inlined] abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3433 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3832 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3789 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4338 jfptr_typeinf_local_88074.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4495 typeinf_ext at ./../usr/share/julia/Compiler/src/typeinfer.jl:1527 add_codeinsts_to_jit! at ./../usr/share/julia/Compiler/src/typeinfer.jl:1673 typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1705 [inlined] typeinf_ext_toplevel at ./../usr/share/julia/Compiler/src/typeinfer.jl:1713 jfptr_typeinf_ext_toplevel_88882.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] jl_type_infer at /source/src/gf.c:463 jl_compile_method_internal at /source/src/gf.c:3636 _jl_invoke at /source/src/gf.c:4108 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _groebner_guess_lucky_prime at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:157 _groebner_learn_and_apply at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:238 _groebner2 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:134 [inlined] groebner2 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:80 unknown function (ip: 0x7e50c164743f) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 __groebner1 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:57 unknown function (ip: 0x7e50c1929fa4) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _groebner1 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:34 unknown function (ip: 0x7e50c1924ad0) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 groebner0 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/groebner/groebner.jl:10 #groebner#194 at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/interface.jl:109 [inlined] groebner at /home/pkgeval/.julia/packages/Groebner/SQwvK/src/interface.jl:107 [inlined] field_contains_algebraic at /home/pkgeval/.julia/packages/RationalFunctionFields/fEaDA/src/Field.jl:343 field_contains at /home/pkgeval/.julia/packages/RationalFunctionFields/fEaDA/src/Field.jl:366 #check_identifiability#222 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:178 check_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:178 [inlined] #assess_global_identifiability#237 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:286 assess_global_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/global_identifiability.jl:286 [inlined] macro expansion at ./timing.jl:502 [inlined] #_assess_identifiability#391 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:174 _assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:140 [inlined] #387 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:121 with_logstate at ./logging/logging.jl:540 with_logger at ./logging/logging.jl:651 [inlined] #assess_identifiability#384 at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:119 [inlined] assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/src/StructuralIdentifiability.jl:110 unknown function (ip: 0x7e50c18182c6) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x7e50c1f9fe82) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:153 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.14/Test/src/Test.jl:1961 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:151 [inlined] macro expansion at ./timing.jl:730 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/runtests.jl:150 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_42396.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_73133.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e510c710249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_33345.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007a9d4de03b20 Total snapshots: 559. Utilization: 0% ╎559 @Base/task.jl:1168 wait_forever() 558╎ 559 @Base/task.jl:1246 wait() ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e50f25fc010 Total snapshots: 139. Utilization: 100% ╎115 @Base/client.jl:577 _start() ╎ 115 @Base/client.jl:310 exec_options(opts::Base.JLOptions) ╎ 115 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 115 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ 115 @Base/Base.jl:310 include(mapexpr::Function, mod::Module, _path::S… ╎ 115 @Base/loading.jl:3063 _include(mapexpr::Function, mod::Module, _p… ╎ ╎ 115 @Base/loading.jl:3003 include_string(mapexpr::typeof(identity), … ╎ ╎ 115 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 115 @StructuralIdentifiability/…:150 top-level scope ╎ ╎ 115 @Base/timing.jl:730 macro expansion ╎ ╎ 115 @StructuralIdentifiability/…:151 macro expansion ╎ ╎ ╎ 115 @Test/src/Test.jl:1961 macro expansion ╎ ╎ ╎ 115 @StructuralIdentifiability/…:153 macro expansion ╎ ╎ ╎ 115 @Base/Base.jl:311 (::Base.IncludeInto)(fname::String) ╎ ╎ ╎ 115 @Base/Base.jl:310 include(mapexpr::Function, mod::Module… ╎ ╎ ╎ 115 @Base/loading.jl:3063 _include(mapexpr::Function, mod::… ╎ ╎ ╎ ╎ 115 @Base/loading.jl:3003 include_string(mapexpr::typeof(i… ╎ ╎ ╎ ╎ 115 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:110 kwcall(::@NamedTupl… ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:119 #assess_identifiab… ╎ ╎ ╎ ╎ 115 @Base/…gging.jl:651 with_logger ╎ ╎ ╎ ╎ ╎ 115 @Base/…gging.jl:540 with_logstate(f::StructuralId… ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:121 (::StructuralId… ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:140 _assess_identi… ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:174 _assess_ident… ╎ ╎ ╎ ╎ ╎ 115 @Base/…ing.jl:502 macro expansion ╎ ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:286 assess_glob… ╎ ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:286 assess_glo… ╎ ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:178 check_ide… ╎ ╎ ╎ ╎ ╎ ╎ 115 @StructuralIdentifiability/…:178 check_id… ╎ ╎ ╎ ╎ ╎ ╎ 115 @RationalFunctionFields/…:366 field_cont… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @RationalFunctionFields/…:343 field_con… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:107 groebner ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:109 #groebner#194 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:10 groebner0(polynomial… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:34 _groebner1(ring::Gr… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:57 __groebner1(ring::… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:80 groebner2(ring::G… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:134 _groebner2 ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:238 _groebner_lear… 114╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 115 @Groebner/…l:157 _groebner_gue… [ Info: Global identifiability assessed in 42.759805036 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.011228731 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.020975277 seconds [ Info: Dimensions of the Wronskians [69] [ Info: Ranks of the Wronskians computed in 0.000233697 seconds [ Info: Global identifiability assessed in 0.056945309 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Note: the input model has nontrivial submodels. If the computation for the full model will be too heavy, you may want to try to first analyze one of the submodels. They can be produced using function `find_submodels` [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 4.743395462 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.002284968 seconds [ Info: Dimensions of the Wronskians [2, 3, 2] [ Info: Ranks of the Wronskians computed in 3.731e-5 seconds [ Info: Simplifying generating set. Simplification level: standard [ Info: Search for polynomial generators concluded in 0.692892402 [ Info: Selecting generators in 0.000282817 [ Info: Inclusion checked with probability 0.9955 in 0.002865702 seconds [ Info: Global identifiability assessed in 6.511374967 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.001716853 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.001307287 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 3.077e-5 seconds [ Info: Global identifiability assessed in 0.005422847 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.001878351 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.001439656 seconds [ Info: Dimensions of the Wronskians [4] [ Info: Ranks of the Wronskians computed in 4.661e-5 seconds [ Info: Global identifiability assessed in 0.005937592 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.003535866 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.002932632 seconds [ Info: Dimensions of the Wronskians [6] [ Info: Ranks of the Wronskians computed in 5.748e-5 seconds [ Info: Simplifying generating set. Simplification level: standard [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_33345.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) Allocations: 26573001 (Pool: 26572251; Big: 750); GC: 23 [162] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/erhUr/test/identifiability.jl:1 _ZN4llvm13IRBuilderBase14SetInsertPointEPNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: 0x415a862f) at (unknown file) unknown function (ip: 0x489bd4ef) at (unknown file) unknown function (ip: (nil)) at (unknown file) Allocations: 316470702 (Pool: 316466276; Big: 4426); GC: 125 PkgEval terminated after 2770.67s: test duration exceeded the time limit