Package evaluation to test PersistenceDiagrams on Julia 1.14.0-DEV.1284 (37b9484954*) started at 2025-11-23T18:32:33.101 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.16s ################################################################################ # Installation # Installing PersistenceDiagrams... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed FillArrays ────────────────── v1.15.0 Installed DataStructures ────────────── v0.19.3 Installed StatsBase ─────────────────── v0.34.8 Installed ScientificTypes ───────────── v3.1.1 Installed Hungarian ─────────────────── v0.7.0 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed PrecompileTools ───────────── v1.3.3 Installed DataValueInterfaces ───────── v1.0.0 Installed StatsAPI ──────────────────── v1.7.1 Installed IrrationalConstants ───────── v0.2.6 Installed Requires ──────────────────── v1.3.1 Installed StringManipulation ────────── v0.4.2 Installed QuadGK ────────────────────── v2.11.2 Installed ColorTypes ────────────────── v0.12.1 Installed PersistenceDiagrams ───────── v0.9.10 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Rmath ─────────────────────── v0.9.0 Installed PtrArrays ─────────────────── v1.3.0 Installed LogExpFunctions ───────────── v0.3.29 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed SpecialFunctions ──────────── v2.6.1 Installed Reexport ──────────────────── v1.2.2 Installed FixedPointNumbers ─────────── v0.8.5 Installed Distributions ─────────────── v0.25.122 Installed Missings ──────────────────── v1.2.0 Installed ScientificTypesBase ───────── v3.0.0 Installed Preferences ───────────────── v1.5.0 Installed JLLWrappers ───────────────── v1.7.1 Installed PrettyTables ──────────────── v2.4.0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed PDMats ────────────────────── v0.11.36 Installed SortingAlgorithms ─────────── v1.2.2 Installed DocStringExtensions ───────── v0.9.5 Installed Crayons ───────────────────── v4.1.1 Installed StatisticalTraits ─────────── v3.5.0 Installed CategoricalArrays ─────────── v1.0.2 Installed MLJModelInterface ─────────── v1.12.0 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [90b4794c] + PersistenceDiagrams v0.9.10 Updating `~/.julia/environments/v1.14/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [324d7699] + CategoricalArrays v1.0.2 [3da002f7] + ColorTypes v0.12.1 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [53c48c17] + FixedPointNumbers v0.8.5 [e91730f6] + Hungarian v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e80e1ace] + MLJModelInterface v1.12.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [90b4794c] + PersistenceDiagrams v0.9.10 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 ⌅ [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4666.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 765.6 ms ✓ Reexport 1097.4 ms ✓ Statistics 824.5 ms ✓ DataAPI 2066.8 ms ✓ IrrationalConstants 767.0 ms ✓ DataValueInterfaces 818.8 ms ✓ StatsAPI 1142.3 ms ✓ Requires 1247.7 ms ✓ OrderedCollections 1095.7 ms ✓ DocStringExtensions 2146.6 ms ✓ FillArrays 783.8 ms ✓ PtrArrays 836.3 ms ✓ ScientificTypesBase 732.0 ms ✓ IteratorInterfaceExtensions 813.0 ms ✓ LaTeXStrings 1232.0 ms ✓ SuiteSparse 1830.4 ms ✓ Crayons 1334.9 ms ✓ Hungarian 1128.3 ms ✓ Compat 1132.6 ms ✓ Preferences 3812.8 ms ✓ FixedPointNumbers 1307.4 ms ✓ Statistics → SparseArraysExt 971.9 ms ✓ Missings 3447.4 ms ✓ DataStructures 1347.2 ms ✓ LogExpFunctions 1499.9 ms ✓ FillArrays → FillArraysSparseArraysExt 922.4 ms ✓ FillArrays → FillArraysStatisticsExt 1147.3 ms ✓ AliasTables 1436.2 ms ✓ StatisticalTraits 817.1 ms ✓ TableTraits 1940.6 ms ✓ PDMats 866.1 ms ✓ Compat → CompatLinearAlgebraExt 1151.6 ms ✓ JLLWrappers 962.2 ms ✓ PrecompileTools 2892.1 ms ✓ ColorTypes 1060.2 ms ✓ SortingAlgorithms 2237.0 ms ✓ QuadGK 3325.6 ms ✓ MLJModelInterface 2060.3 ms ✓ Tables 1679.5 ms ✓ FillArrays → FillArraysPDMatsExt 3932.4 ms ✓ CategoricalArrays 1400.9 ms ✓ Rmath_jll 1347.0 ms ✓ OpenSpecFun_jll 2778.7 ms ✓ RecipesBase 3167.8 ms ✓ StringManipulation 1294.1 ms ✓ ColorTypes → StyledStringsExt 4447.3 ms ✓ StatsBase 1417.3 ms ✓ Rmath 4951.5 ms ✓ SpecialFunctions 1927.6 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 27409.6 ms ✓ PrettyTables 1405.3 ms ✓ PDMats → StatsBaseExt 1986.1 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 3202.0 ms ✓ HypergeometricFunctions 2843.6 ms ✓ StatsFuns 9218.6 ms ✓ Distributions 7612.3 ms ✓ ScientificTypes 9340.2 ms ✓ PersistenceDiagrams 57 dependencies successfully precompiled in 146 seconds. 16 already precompiled. Precompilation completed after 161.04s ################################################################################ # Testing # Testing PersistenceDiagrams Status `/tmp/jl_vwqOdt/Project.toml` [4c88cf16] Aqua v0.8.14 [34da2185] Compat v4.18.1 [a93c6f00] DataFrames v1.8.1 [e30172f5] Documenter v1.16.1 [e91730f6] Hungarian v0.7.0 [a7f614a8] MLJBase v1.10.0 [e80e1ace] MLJModelInterface v1.12.0 [90b4794c] PersistenceDiagrams v0.9.10 [3cdcf5f2] RecipesBase v1.3.4 [1bc83da4] SafeTestsets v0.1.0 [321657f4] ScientificTypes v3.1.1 [10745b16] Statistics v1.11.1 [fd094767] Suppressor v0.2.8 [bd369af6] Tables v1.12.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_vwqOdt/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [324d7699] CategoricalArrays v1.0.2 [af321ab8] CategoricalDistributions v0.2.1 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.15.0 [53c48c17] FixedPointNumbers v0.8.5 [46192b85] GPUArraysCore v0.2.0 [d7ba0133] Git v1.5.0 [076d061b] HashArrayMappedTries v0.2.0 [e91730f6] Hungarian v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.3.0 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [92ad9a40] LearnAPI v2.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.10.0 [e80e1ace] MLJModelInterface v1.12.0 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.31 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [90b4794c] PersistenceDiagrams v0.9.10 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [1bc83da4] SafeTestsets v0.1.0 [321657f4] ScientificTypes v3.1.1 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.5.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [c062fc1d] StatisticalMeasuresBase v0.1.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [ec057cc2] StructUtils v2.6.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.3+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.17.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ┌ Warning: Using ErrorException to test field access is deprecated; use FieldError instead. │ caller = do_test_throws(result::Test.ExecutionResult, orig_expr::Any, extype::Any) at Test.jl:910 └ @ Core /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:910 Test Summary: | Pass Total Time diagrams | 104 104 2m47.7s Test Summary: | Pass Total Time matching | 59 59 23.8s Test Summary: | Pass Total Time persistencecurves | 91 91 18.8s Test Summary: | Pass Total Time persistenceimages | 46 46 3.4s Test Summary: | Pass Total Time scitypes | 2 2 0.3s ┌ Warning: Skipping infinite intervals └ @ PersistenceDiagrams ~/.julia/packages/PersistenceDiagrams/EVQOb/src/persistencecurves.jl:159 Test Summary: | Pass Total Time mlj | 394 394 6m03.2s Test Summary: | Pass Total Time plotsrecipes | 42 42 8.9s Test Summary: | Pass Total Time aqua | 10 10 2m00.3s ┌ Warning: Doctests were set up on Julia v1.11. Skipping. └ @ Main.var"##doctests#149" ~/.julia/packages/PersistenceDiagrams/EVQOb/test/doctests.jl:6 Test Summary: | Total Time doctests | 0 2m08.5s Testing PersistenceDiagrams tests passed Testing completed after 845.89s PkgEval succeeded after 1049.99s