Package evaluation to test Madrigal on Julia 1.14.0-DEV.1284 (37b9484954*) started at 2025-11-23T16:58:25.972


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.24s


################################################################################
# Installation
#

Installing Madrigal...
   Resolving package versions...
    Updating `~/.julia/environments/v1.14/Project.toml`
  [30ac0af5] + Madrigal v0.1.2
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [d1d4a3ce] + BitFlags v0.1.9
  [336ed68f] + CSV v0.10.15
  [944b1d66] + CodecZlib v0.7.8
  [34da2185] + Compat v4.18.1
  [2569d6c7] + ConcreteStructs v0.2.3
  [f0e56b4a] + ConcurrentUtilities v2.5.0
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [460bff9d] + ExceptionUnwrapping v0.1.11
  [48062228] + FilePathsBase v0.9.24
  [cd3eb016] + HTTP v1.10.19
  [842dd82b] + InlineStrings v1.4.5
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [e6f89c97] + LoggingExtras v1.2.0
  [1914dd2f] + MacroTools v0.5.16
  [30ac0af5] + Madrigal v0.1.2
  [739be429] + MbedTLS v1.1.9
  [6fafb56a] + Memoization v0.2.2
  [4d8831e6] + OpenSSL v1.6.0
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [91c51154] + SentinelArrays v1.4.8
  [777ac1f9] + SimpleBufferStream v1.2.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [5c2747f8] + URIs v1.6.1
  [ea10d353] + WeakRefStrings v1.4.2
  [76eceee3] + WorkerUtilities v1.6.1
  [c8ffd9c3] + MbedTLS_jll v2.28.1010+0
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [f489334b] + StyledStrings v1.11.0
  [fa267f1f] + TOML v1.0.3
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [83775a58] + Zlib_jll v1.3.1+2

Installation completed after 5.07s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
  18196.1 ms  ✓ Madrigal
  1 dependency successfully precompiled in 19 seconds. 56 already precompiled.

Precompilation completed after 31.99s


################################################################################
# Testing
#

     Testing Madrigal
      Status `/tmp/jl_EQh3l9/Project.toml`
  [4c88cf16] Aqua v0.8.14
  [30ac0af5] Madrigal v0.1.2
  [f8b46487] TestItemRunner v1.1.1
  [1c621080] TestItems v1.0.0
  [ade2ca70] Dates v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_EQh3l9/Manifest.toml`
  [4c88cf16] Aqua v0.8.14
  [d1d4a3ce] BitFlags v0.1.9
  [336ed68f] CSV v0.10.15
  [944b1d66] CodecZlib v0.7.8
  [34da2185] Compat v4.18.1
  [2569d6c7] ConcreteStructs v0.2.3
  [f0e56b4a] ConcurrentUtilities v2.5.0
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [460bff9d] ExceptionUnwrapping v0.1.11
  [48062228] FilePathsBase v0.9.24
  [cd3eb016] HTTP v1.10.19
  [842dd82b] InlineStrings v1.4.5
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [e6f89c97] LoggingExtras v1.2.0
  [1914dd2f] MacroTools v0.5.16
  [30ac0af5] Madrigal v0.1.2
  [739be429] MbedTLS v1.1.9
  [6fafb56a] Memoization v0.2.2
  [4d8831e6] OpenSSL v1.6.0
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [91c51154] SentinelArrays v1.4.8
  [777ac1f9] SimpleBufferStream v1.2.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [f8b46487] TestItemRunner v1.1.1
  [1c621080] TestItems v1.0.0
  [3bb67fe8] TranscodingStreams v0.11.3
  [5c2747f8] URIs v1.6.1
  [ea10d353] WeakRefStrings v1.4.2
  [76eceee3] WorkerUtilities v1.6.1
  [c8ffd9c3] MbedTLS_jll v2.28.1010+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [b27032c2] LibCURL v1.0.0
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v1.0.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [f489334b] StyledStrings v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.17.0+0
  [e37daf67] LibGit2_jll v1.9.1+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.11.4
  [458c3c95] OpenSSL_jll v3.5.4+0
  [efcefdf7] PCRE2_jll v10.47.0+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850ede] nghttp2_jll v1.68.0+1
  [3f19e933] p7zip_jll v17.7.0+0
     Testing Running tests...
WARNING: Method definition _dummy_backedge() in module Memoization at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:49 overwritten at /home/pkgeval/.julia/packages/Memoization/ON3Za/src/Memoization.jl:65.
ERROR: LoadError: UndefVarError: `memhash_seed` not defined in `Base`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
  [1] getproperty
    @ ./Base_compiler.jl:50 [inlined]
  [2] hash(s::CSV.PointerString, h::UInt64)
    @ CSV ~/.julia/packages/CSV/XLcqT/src/utils.jl:582
  [3] hash
    @ ./hashing.jl:40 [inlined]
  [4] hashindex
    @ ./dict.jl:129 [inlined]
  [5] ht_keyindex2_shorthash!(h::Dict{WeakRefStrings.PosLenString, UInt32}, key::CSV.PointerString)
    @ Base ./dict.jl:271
  [6] ht_keyindex2!
    @ ./dict.jl:322 [inlined]
  [7] checkpooled!(::Type{WeakRefStrings.PosLenString}, pertaskcolumns::Nothing, col::CSV.Column, j::Int64, ntasks::Int64, nrows::Int64, ctx::CSV.Context)
    @ CSV ~/.julia/packages/CSV/XLcqT/src/file.jl:504
  [8] CSV.File(ctx::CSV.Context, chunking::Bool)
    @ CSV ~/.julia/packages/CSV/XLcqT/src/file.jl:302
  [9] File
    @ ~/.julia/packages/CSV/XLcqT/src/file.jl:227 [inlined]
 [10] CSV.File(source::IOBuffer; header::Bool, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, groupmark::Nothing, truestrings::Vector{String}, falsestrings::Vector{String}, stripwhitespace::Bool, type::Nothing, types::Nothing, typemap::IdDict{Type, Type}, pool::Tuple{Float64, Int64}, downcast::Bool, lazystrings::Bool, stringtype::Type{WeakRefStrings.PosLenString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool)
    @ CSV ~/.julia/packages/CSV/XLcqT/src/file.jl:223
 [11] kwcall(::@NamedTuple{header::Bool, stringtype::DataType, silencewarnings::Bool}, ::Type{CSV.File}, source::IOBuffer)
    @ CSV ~/.julia/packages/CSV/XLcqT/src/file.jl:162
 [12] get_metadata(id::Symbol; server::Madrigal.Server)
    @ Madrigal ~/.julia/packages/Madrigal/dvv8h/src/metadata.jl:44
 [13] get_metadata(id::Symbol)
    @ Madrigal ~/.julia/packages/Madrigal/dvv8h/src/metadata.jl:39
 [14] top-level scope
    @ ~/.julia/packages/Madrigal/dvv8h/test/runtests.jl:20
 [15] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [16] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:3003
 [17] include_string(m::Module, txt::String, fname::String)
    @ Base ./loading.jl:3013
 [18] #run_testitem##6
    @ ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:118 [inlined]
 [19] withpath(f::TestItemRunner.var"#run_testitem##6#run_testitem##7"{String, String, Module}, path::String)
    @ TestItemRunner ~/.julia/packages/TestItemRunner/0zjFN/src/vendored_code.jl:7
 [20] #run_testitem##4
    @ ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:117 [inlined]
 [21] cd(f::TestItemRunner.var"#run_testitem##4#run_testitem##5"{String, String, Module}, dir::String)
    @ Base.Filesystem ./file.jl:112
 [22] run_testitem(filepath::String, use_default_usings::Bool, setups::Vector{Symbol}, package_name::String, original_code::String, line::Int64, column::Int64, test_setup_module_set::TestItemRunner.TestSetupModuleSet, testsetups::Dict{Symbol, Any})
    @ TestItemRunner ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:116
 [23] macro expansion
    @ ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:259 [inlined]
 [24] macro expansion
    @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2130 [inlined]
 [25] macro expansion
    @ ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:258 [inlined]
 [26] macro expansion
    @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2130 [inlined]
 [27] macro expansion
    @ ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:236 [inlined]
 [28] macro expansion
    @ /opt/julia/share/julia/stdlib/v1.14/Test/src/Test.jl:2130 [inlined]
 [29] run_tests(path::String; filter::var"#2#3", verbose::Bool)
    @ TestItemRunner ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:233
 [30] kwcall(::@NamedTuple{filter::var"#2#3"}, ::typeof(TestItemRunner.run_tests), path::String)
    @ TestItemRunner ~/.julia/packages/TestItemRunner/0zjFN/src/TestItemRunner.jl:133
 [31] top-level scope
    @ ~/.julia/packages/Madrigal/dvv8h/test/runtests.jl:5
 [32] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [33] top-level scope
    @ none:6
 [34] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [35] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:310
 [36] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Madrigal/dvv8h/test/runtests.jl:20
in expression starting at /home/pkgeval/.julia/packages/Madrigal/dvv8h/test/runtests.jl:5

Testing failed after 238.35s

ERROR: LoadError: Package Madrigal errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 302.66s: package tests unexpectedly errored