Package evaluation to test DiffEqBayes on Julia 1.14.0-DEV.1272 (5444ac0564*) started at 2025-11-21T02:55:44.997 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.19s ################################################################################ # Installation # Installing DiffEqBayes... Resolving package versions... Installed CommonWorldInvalidations ───────── v1.0.0 Installed FastPower ──────────────────────── v1.2.0 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed InlineStrings ──────────────────── v1.4.5 Installed DefineSingletons ───────────────── v0.1.2 Installed Glob ───────────────────────────── v1.3.1 Installed DistributionsAD ────────────────── v0.6.58 Installed Optim ──────────────────────────── v1.13.2 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed Functors ───────────────────────── v0.5.2 Installed PreallocationTools ─────────────── v0.4.34 Installed SymbolicUtils ──────────────────── v3.32.0 Installed ChainRules ─────────────────────── v1.72.6 Installed TensorCast ─────────────────────── v0.4.9 Installed EnzymeCore ─────────────────────── v0.8.17 Installed InitialValues ──────────────────── v0.3.1 Installed CpuId ──────────────────────────── v0.3.1 Installed ArgCheck ───────────────────────── v2.5.0 Installed SentinelArrays ─────────────────── v1.4.8 Installed DispatchDoctor ─────────────────── v0.4.26 Installed AbstractPPL ────────────────────── v0.12.0 Installed TransmuteDims ──────────────────── v0.1.17 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed Chairmarks ─────────────────────── v1.3.1 Installed Distances ──────────────────────── v0.10.12 Installed DiffEqCallbacks ────────────────── v4.10.1 Installed DynamicQuantities ──────────────── v1.10.0 Installed NaNMath ────────────────────────── v1.1.3 Installed Turing ─────────────────────────── v0.39.10 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed SCCNonlinearSolve ──────────────── v1.6.0 Installed NonlinearSolveBase ─────────────── v2.4.0 Installed PackageExtensionCompat ─────────── v1.0.2 Installed WoodburyMatrices ───────────────── v1.0.0 Installed FastBroadcast ──────────────────── v0.3.5 Installed EnumX ──────────────────────────── v1.0.5 Installed Tables ─────────────────────────── v1.12.1 Installed NLSolversBase ──────────────────── v7.10.0 Installed JumpProcesses ──────────────────── v9.19.1 Installed TransformVariables ─────────────── v0.8.17 Installed DiffEqBase ─────────────────────── v6.191.0 Installed BracketingNonlinearSolve ───────── v1.6.0 Installed Jieko ──────────────────────────── v0.2.1 Installed Reexport ───────────────────────── v1.2.2 Installed InverseFunctions ───────────────── v0.1.17 Installed Missings ───────────────────────── v1.2.0 Installed Preferences ────────────────────── v1.5.0 Installed JuliaFormatter ─────────────────── v2.2.0 Installed Static ─────────────────────────── v1.3.1 Installed TableTraits ────────────────────── v1.0.1 Installed MappedArrays ───────────────────── v0.4.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed Crayons ────────────────────────── v4.1.1 Installed RecursiveArrayTools ────────────── v3.39.0 Installed MaybeInplace ───────────────────── v0.1.4 Installed MCMCChains ─────────────────────── v7.6.0 Installed RangeArrays ────────────────────── v0.3.2 Installed DensityInterface ───────────────── v0.4.0 Installed SortingAlgorithms ──────────────── v1.2.2 Installed NaturalSort ────────────────────── v1.0.0 Installed UnPack ─────────────────────────── v1.0.2 Installed Format ─────────────────────────── v1.3.7 Installed MLStyle ────────────────────────── v0.4.17 Installed ADTypes ────────────────────────── v1.19.0 Installed Inflate ────────────────────────── v0.1.5 Installed DataStructures ─────────────────── v0.19.3 Installed URIs ───────────────────────────── v1.6.1 Installed MacroTools ─────────────────────── v0.5.16 Installed StridedViews ───────────────────── v0.4.1 Installed TermInterface ──────────────────── v2.0.0 Installed ManualMemory ───────────────────── v0.1.8 Installed DiffResults ────────────────────── v1.1.0 Installed FillArrays ─────────────────────── v1.15.0 Installed Tricks ─────────────────────────── v0.1.13 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed AbstractTrees ──────────────────── v0.4.5 Installed SparseMatrixColorings ──────────── v0.4.23 Installed DelimitedFiles ─────────────────── v1.9.1 Installed ArnoldiMethod ──────────────────── v0.4.0 Installed DynamicHMC ─────────────────────── v3.5.1 Installed StatsBase ──────────────────────── v0.34.8 Installed CodecZlib ──────────────────────── v0.7.8 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed ExprTools ──────────────────────── v0.1.10 Installed ConsoleProgressMonitor ─────────── v0.1.2 Installed Optimisers ─────────────────────── v0.4.6 Installed ArrayInterface ─────────────────── v7.22.0 Installed SciMLJacobianOperators ─────────── v0.1.11 Installed DataValueInterfaces ────────────── v1.0.0 Installed CommonSubexpressions ───────────── v0.3.1 Installed MCMCDiagnosticTools ────────────── v0.3.15 Installed LoggingExtras ──────────────────── v1.2.0 Installed RandomNumbers ──────────────────── v1.6.0 Installed LayoutPointers ─────────────────── v0.1.17 Installed SparseConnectivityTracer ───────── v1.1.3 Installed ConcreteStructs ────────────────── v0.2.3 Installed TruncatedStacktraces ───────────── v1.4.0 Installed RealDot ────────────────────────── v0.1.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed DynamicPPL ─────────────────────── v0.36.15 Installed AdvancedMH ─────────────────────── v0.8.9 Installed TerminalLoggers ────────────────── v0.1.7 Installed IrrationalConstants ────────────── v0.2.6 Installed IntegerMathUtils ───────────────── v0.1.3 Installed SimpleTraits ───────────────────── v0.9.5 Installed L_BFGS_B_jll ───────────────────── v3.0.1+0 Installed ArrayLayouts ───────────────────── v1.12.1 Installed SplittablesBase ────────────────── v0.1.15 Installed LeftChildRightSiblingTrees ─────── v0.2.1 Installed CompatHelperLocal ──────────────── v0.1.27 Installed Transducers ────────────────────── v0.4.85 Installed Roots ──────────────────────────── v2.2.10 Installed Interpolations ─────────────────── v0.16.2 Installed BlockArrays ────────────────────── v1.9.3 Installed Setfield ───────────────────────── v1.1.2 Installed Baselet ────────────────────────── v0.1.1 Installed CompositeTypes ─────────────────── v0.1.4 Installed PooledArrays ───────────────────── v1.4.3 Installed OptimizationBase ───────────────── v2.14.0 Installed WorkerUtilities ────────────────── v1.6.1 Installed PDMats ─────────────────────────── v0.11.36 Installed NamedArrays ────────────────────── v0.10.5 Installed AxisArrays ─────────────────────── v0.4.8 Installed DocStringExtensions ────────────── v0.9.5 Installed Moshi ──────────────────────────── v0.3.7 Installed DifferentiationInterface ───────── v0.7.12 Installed TableOperations ────────────────── v1.2.0 Installed LBFGSB ─────────────────────────── v0.4.1 Installed ResettableStacks ───────────────── v1.1.1 Installed CompositionsBase ───────────────── v0.1.2 Installed FindFirstFunctions ─────────────── v1.4.2 Installed CommonSolve ────────────────────── v0.2.4 Installed ForwardDiff ────────────────────── v1.3.0 Installed AdvancedVI ─────────────────────── v0.4.1 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed SimpleUnPack ───────────────────── v1.1.0 Installed Bijections ─────────────────────── v0.2.2 Installed KernelDensity ──────────────────── v0.6.10 Installed LabelledArrays ─────────────────── v1.16.1 Installed Unityper ───────────────────────── v0.1.6 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed AdvancedPS ─────────────────────── v0.7.0 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed AliasTables ────────────────────── v1.1.3 Installed SparseInverseSubset ────────────── v0.1.2 Installed Combinatorics ──────────────────── v1.0.2 Installed DynamicPolynomials ─────────────── v0.6.4 Installed LineSearch ─────────────────────── v0.1.4 Installed TransformedLogDensities ────────── v1.1.1 Installed MistyClosures ──────────────────── v2.1.0 Installed StanSample ─────────────────────── v7.1.1 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed FunctionWrappersWrappers ───────── v0.1.3 Installed RecipesBase ────────────────────── v1.3.4 Installed DataAPI ────────────────────────── v1.16.0 Installed InvertedIndices ────────────────── v1.3.1 Installed SciMLOperators ─────────────────── v1.12.0 Installed DomainSets ─────────────────────── v0.7.16 Installed SciMLStructures ────────────────── v1.7.0 Installed TaskLocalValues ────────────────── v0.1.3 Installed StaticArraysCore ───────────────── v1.4.4 Installed StaticArrays ───────────────────── v1.9.15 Installed MultivariatePolynomials ────────── v0.5.13 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed Latexify ───────────────────────── v0.16.10 Installed BangBang ───────────────────────── v0.4.6 Installed StringManipulation ─────────────── v0.4.1 Installed AbstractFFTs ───────────────────── v1.5.0 Installed SciMLPublic ────────────────────── v1.0.0 Installed Symbolics ──────────────────────── v6.57.0 Installed Requires ───────────────────────── v1.3.1 Installed LogDensityProblemsAD ───────────── v1.13.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed DiffRules ──────────────────────── v1.15.1 Installed FunctionWrappers ───────────────── v1.1.3 Installed SciMLBase ──────────────────────── v2.127.0 Installed JuliaSyntax ────────────────────── v0.4.10 Installed JSON ───────────────────────────── v0.21.4 Installed Distributions ──────────────────── v0.25.122 Installed CSV ────────────────────────────── v0.10.15 Installed OrdinaryDiffEqCore ─────────────── v1.36.0 Installed Rmath ──────────────────────────── v0.9.0 Installed Parsers ────────────────────────── v2.8.3 Installed PrettyTables ───────────────────── v3.1.1 Installed FiniteDiff ─────────────────────── v2.29.0 Installed AdvancedHMC ────────────────────── v0.8.3 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed Polyester ──────────────────────── v0.7.18 Installed FastClosures ───────────────────── v0.3.2 Installed Unitful ────────────────────────── v1.25.1 Installed OptimizationOptimJL ────────────── v0.4.5 Installed Libtask ────────────────────────── v0.9.10 Installed MutableArithmetics ─────────────── v1.6.7 Installed DataFrames ─────────────────────── v1.8.1 Installed TestItems ──────────────────────── v1.0.0 Installed WeakRefStrings ─────────────────── v1.4.2 Installed JLLWrappers ────────────────────── v1.7.1 Installed ZygoteRules ────────────────────── v0.2.7 Installed SymbolicLimits ─────────────────── v0.2.3 Installed IterTools ──────────────────────── v1.10.0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Primes ─────────────────────────── v0.5.7 Installed StatisticalTraits ──────────────── v3.5.0 Installed Bijectors ──────────────────────── v0.15.12 Installed MicroCollections ───────────────── v0.2.0 Installed Accessors ──────────────────────── v0.1.42 Installed FilePathsBase ──────────────────── v0.9.24 Installed Adapt ──────────────────────────── v4.4.0 Installed Graphs ─────────────────────────── v1.13.1 Installed HypergeometricFunctions ────────── v0.3.28 Installed ConstructionBase ───────────────── v1.6.0 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed RuntimeGeneratedFunctions ──────── v0.5.16 Installed ImplicitDiscreteSolve ──────────── v1.2.0 Installed PoissonRandom ──────────────────── v0.4.7 Installed SymbolicIndexingInterface ──────── v0.3.46 Installed Random123 ──────────────────────── v1.7.1 Installed TranscodingStreams ─────────────── v0.11.3 Installed ModelingToolkit ────────────────── v10.29.0 Installed Optimization ───────────────────── v4.8.0 Installed Compat ─────────────────────────── v4.18.1 Installed StrideArraysCore ───────────────── v0.5.8 Installed PositiveFactorizations ─────────── v0.2.4 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed ExproniconLite ─────────────────── v0.10.14 Installed ProgressLogging ────────────────── v0.1.5 Installed PrecompileTools ────────────────── v1.3.3 Installed DiffEqBayes ────────────────────── v3.9.0 Installed LogDensityProblems ─────────────── v2.2.0 Installed StructArrays ───────────────────── v0.7.2 Installed ProgressMeter ──────────────────── v1.11.0 Installed TupleTools ─────────────────────── v1.6.0 Installed TimerOutputs ───────────────────── v0.5.29 Installed ChainRulesCore ─────────────────── v1.26.0 Installed OffsetArrays ───────────────────── v1.17.0 Installed Ratios ─────────────────────────── v0.4.5 Installed CPUSummary ─────────────────────── v0.2.7 Installed IfElse ─────────────────────────── v0.1.1 Installed NamedTupleTools ────────────────── v0.14.3 Installed Parameters ─────────────────────── v0.12.3 Installed DiffEqNoiseProcess ─────────────── v5.24.1 Installed StanBase ───────────────────────── v4.12.2 Installed MuladdMacro ────────────────────── v0.2.4 Installed SciMLLogging ───────────────────── v1.5.0 Installed AbstractMCMC ───────────────────── v5.10.0 Installed ScientificTypesBase ────────────── v3.0.0 Installed EllipticalSliceSampling ────────── v2.0.0 Installed PtrArrays ──────────────────────── v1.3.0 Installed IntervalSets ───────────────────── v0.7.13 Installed SpecialFunctions ───────────────── v2.6.1 Installed SimpleNonlinearSolve ───────────── v2.9.0 Installed LazyStack ──────────────────────── v0.1.3 Installed FFTW ───────────────────────────── v1.10.0 Installed PolyesterWeave ─────────────────── v0.2.2 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed ChangesOfVariables ─────────────── v0.1.10 Installed SSMProblems ────────────────────── v0.5.2 Installed MLJModelInterface ──────────────── v1.12.0 Installed Strided ────────────────────────── v2.3.2 Installed LineSearches ───────────────────── v7.4.1 Installed CommonMark ─────────────────────── v0.9.1 Installing 6 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact L_BFGS_B 45.2 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact FFTW 2.2 MiB Installed artifact Ghostscript 31.4 MiB Updating `~/.julia/environments/v1.14/Project.toml` [ebbdde9d] + DiffEqBayes v3.9.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.19.0 [621f4979] + AbstractFFTs v1.5.0 [80f14c24] + AbstractMCMC v5.10.0 ⌅ [7a57a42e] + AbstractPPL v0.12.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [0bf59076] + AdvancedHMC v0.8.3 [5b7e9947] + AdvancedMH v0.8.9 [576499cb] + AdvancedPS v0.7.0 ⌅ [b5ca4192] + AdvancedVI v0.4.1 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.1 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [e2ed5e7c] + Bijections v0.2.2 [76274a88] + Bijectors v0.15.12 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.6.0 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [0ca39b1e] + Chairmarks v1.3.1 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 ⌅ [861a8166] + Combinatorics v1.0.2 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [5224ae11] + CompatHelperLocal v0.1.27 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [88cd18e8] + ConsoleProgressMonitor v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b429d917] + DensityInterface v0.4.0 [2b5f629d] + DiffEqBase v6.191.0 [ebbdde9d] + DiffEqBayes v3.9.0 [459566f4] + DiffEqCallbacks v4.10.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.12 [8d63f2c5] + DispatchDoctor v0.4.26 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ced4e74d] + DistributionsAD v0.6.58 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 [bbc10e6e] + DynamicHMC v3.5.1 ⌅ [366bfd00] + DynamicPPL v0.36.15 [7c1d4256] + DynamicPolynomials v0.6.4 [06fc5a27] + DynamicQuantities v1.10.0 [cad2338a] + EllipticalSliceSampling v2.0.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.17 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7a1cc6ca] + FFTW v1.10.0 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.2.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [64ca27bc] + FindFirstFunctions v1.4.2 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.0 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [3263718b] + ImplicitDiscreteSolve v1.2.0 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.2.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.19.1 [5ab0869b] + KernelDensity v0.6.10 [5be7bae1] + LBFGSB v0.4.1 [b964fa9f] + LaTeXStrings v1.4.0 [2ee39098] + LabelledArrays v1.16.1 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [1fad7336] + LazyStack v0.1.3 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.1 [6f1fad26] + Libtask v0.9.10 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.1 [6fdf6af0] + LogDensityProblems v2.2.0 [996a588d] + LogDensityProblemsAD v1.13.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [c7f686f2] + MCMCChains v7.6.0 [be115224] + MCMCDiagnosticTools v0.3.15 [e80e1ace] + MLJModelInterface v1.12.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [bb5d69b7] + MaybeInplace v0.1.4 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [dbe65cb8] + MistyClosures v2.1.0 [961ee093] + ModelingToolkit v10.29.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.13 [d8a4904e] + MutableArithmetics v1.6.7 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [86f7a689] + NamedArrays v0.10.5 [d9ec5142] + NamedTupleTools v0.14.3 [c020b1a1] + NaturalSort v1.0.0 [be0214bd] + NonlinearSolveBase v2.4.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [3bd65402] + Optimisers v0.4.6 ⌅ [7f7a1694] + Optimization v4.8.0 ⌅ [bca83a33] + OptimizationBase v2.14.0 ⌃ [36348300] + OptimizationOptimJL v0.4.5 [bac558e1] + OrderedCollections v1.8.1 [bbf590c4] + OrdinaryDiffEqCore v1.36.0 [90014a1f] + PDMats v0.11.36 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.1 [27ebfcd6] + Primes v0.5.7 [33c8b6b6] + ProgressLogging v0.1.5 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.39.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [9dfe8606] + SCCNonlinearSolve v1.6.0 [94e857df] + SIMDTypes v0.1.0 ⌅ [26aad666] + SSMProblems v0.5.2 [0bca4576] + SciMLBase v2.127.0 [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.5.0 [c0aeaf25] + SciMLOperators v1.12.0 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [30f210dd] + ScientificTypesBase v3.0.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.9.0 [699a6c99] + SimpleTraits v0.9.5 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.2 [9f842d2f] + SparseConnectivityTracer v1.1.3 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [d0ee94f6] + StanBase v4.12.2 ⌃ [c1514b29] + StanSample v7.1.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.1 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.2 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌃ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.57.0 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.3 [02d47bb6] + TensorCast v0.4.9 [8ea1fca8] + TermInterface v2.0.0 [5d786b92] + TerminalLoggers v0.1.7 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [84d833dd] + TransformVariables v0.8.17 [f9bc47f6] + TransformedLogDensities v1.1.1 [24ddb15e] + TransmuteDims v0.1.17 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [9d95972d] + TupleTools v1.6.0 ⌅ [fce5fe82] + Turing v0.39.10 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7c27f48] + Unityper v0.1.6 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [700de1a5] + ZygoteRules v0.2.7 [f5851436] + FFTW_jll v3.3.11+0 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.3+0 [81d17ec3] + L_BFGS_B_jll v3.0.1+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 15.96s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 3431.9 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 3728.9 ms ✓ MacroTools 1390.0 ms ✓ InlineStrings 641.8 ms ✓ Reexport 781.7 ms ✓ MappedArrays 928.4 ms ✓ ConstructionBase 1748.2 ms ✓ IrrationalConstants 734.7 ms ✓ ChangesOfVariables 652.7 ms ✓ DataValueInterfaces 636.6 ms ✓ MistyClosures 724.8 ms ✓ StatsAPI 1895.5 ms ✓ Format 981.5 ms ✓ IterTools 877.2 ms ✓ IntervalSets 1743.0 ms ✓ Combinatorics 19545.9 ms ✓ JuliaSyntax 649.3 ms ✓ Inflate 595.4 ms ✓ ArgCheck 557.7 ms ✓ TermInterface 510.0 ms ✓ CommonSolve 878.7 ms ✓ TranscodingStreams 836.5 ms ✓ TupleTools 692.7 ms ✓ LaTeXStrings 718.9 ms ✓ Glob 1835.8 ms ✓ Baselet 633.3 ms ✓ TestItems 924.0 ms ✓ Statistics 783.6 ms ✓ Tricks 811.7 ms ✓ StaticArraysCore 1078.9 ms ✓ EnzymeCore 751.1 ms ✓ CompositeTypes 646.7 ms ✓ IfElse 676.7 ms ✓ PtrArrays 670.7 ms ✓ TaskLocalValues 618.0 ms ✓ NaturalSort 803.8 ms ✓ NamedTupleTools 785.7 ms ✓ ManualMemory 801.0 ms ✓ PositiveFactorizations 753.9 ms ✓ DataAPI 740.1 ms ✓ SciMLPublic 2911.0 ms ✓ ExproniconLite 642.9 ms ✓ RealDot 650.7 ms ✓ CommonWorldInvalidations 721.8 ms ✓ FindFirstFunctions 959.3 ms ✓ URIs 631.9 ms ✓ FastPower 20861.8 ms ✓ MLStyle 698.2 ms ✓ InvertedIndices 1310.7 ms ✓ RandomNumbers 785.0 ms ✓ InverseFunctions 680.7 ms ✓ CompositionsBase 909.6 ms ✓ AbstractTrees 692.0 ms ✓ SimpleUnPack 1295.6 ms ✓ InitialValues 684.2 ms ✓ MuladdMacro 881.0 ms ✓ AbstractFFTs 731.5 ms ✓ EnumX 839.5 ms ✓ WorkerUtilities 781.1 ms ✓ Bijections 1809.7 ms ✓ FillArrays 726.4 ms ✓ ExprTools 672.5 ms ✓ IntegerMathUtils 712.4 ms ✓ ScientificTypesBase 666.3 ms ✓ UnPack 665.5 ms ✓ ConcreteStructs 752.1 ms ✓ RangeArrays 1064.2 ms ✓ OrderedCollections 1267.2 ms ✓ FunctionWrappers 1152.3 ms ✓ ADTypes 1081.5 ms ✓ ProgressLogging 938.0 ms ✓ DocStringExtensions 680.3 ms ✓ FastClosures 677.9 ms ✓ DefineSingletons 1340.1 ms ✓ OffsetArrays 630.0 ms ✓ SIMDTypes 635.2 ms ✓ IteratorInterfaceExtensions 647.1 ms ✓ PackageExtensionCompat 1531.2 ms ✓ Crayons 817.5 ms ✓ DelimitedFiles 2307.7 ms ✓ Chairmarks 840.3 ms ✓ NaNMath 970.9 ms ✓ Requires 1068.1 ms ✓ SuiteSparse 1474.5 ms ✓ CpuId 1153.9 ms ✓ WoodburyMatrices 27571.5 ms ✓ Unitful 2232.6 ms ✓ SentinelArrays 881.5 ms ✓ LoggingExtras 1451.2 ms ✓ ProgressMeter 953.6 ms ✓ Compat 932.6 ms ✓ Preferences 9041.7 ms ✓ MutableArithmetics 1428.8 ms ✓ CommonSubexpressions 2747.2 ms ✓ SimpleTraits 686.4 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3025.6 ms ✓ ChangesOfVariables → ChangesOfVariablesTestExt 2116.2 ms ✓ Libtask 636.0 ms ✓ IntervalSets → IntervalSetsRandomExt 645.0 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 809.1 ms ✓ CodecZlib 1107.4 ms ✓ Statistics → SparseArraysExt 1185.3 ms ✓ Distances 648.5 ms ✓ IntervalSets → IntervalSetsStatisticsExt 706.9 ms ✓ DiffResults 805.0 ms ✓ AliasTables 1494.5 ms ✓ ThreadingUtilities 832.0 ms ✓ Missings 835.1 ms ✓ PooledArrays 2675.0 ms ✓ Jieko 1554.2 ms ✓ Random123 726.5 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1274.4 ms ✓ InverseFunctions → InverseFunctionsTestExt 691.0 ms ✓ ChangesOfVariables → ChangesOfVariablesInverseFunctionsExt 659.0 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 696.5 ms ✓ LeftChildRightSiblingTrees 3385.3 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1276.5 ms ✓ FillArrays → FillArraysSparseArraysExt 787.7 ms ✓ FillArrays → FillArraysStatisticsExt 2616.3 ms ✓ TimerOutputs 735.8 ms ✓ RuntimeGeneratedFunctions 952.7 ms ✓ Primes 752.9 ms ✓ StatisticalTraits 768.5 ms ✓ Parameters 2905.9 ms ✓ DataStructures 646.5 ms ✓ FunctionWrappersWrappers 630.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 1555.0 ms ✓ DifferentiationInterface 632.7 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1151.2 ms ✓ LogExpFunctions 4157.8 ms ✓ CompatHelperLocal 1662.1 ms ✓ LogDensityProblems 610.9 ms ✓ TableTraits 758.1 ms ✓ StridedViews 663.1 ms ✓ Chairmarks → StatisticsChairmarksExt 689.6 ms ✓ Ratios 764.4 ms ✓ Adapt 1499.2 ms ✓ PDMats 1063.9 ms ✓ SparseInverseSubset 1122.8 ms ✓ AxisAlgorithms 1343.6 ms ✓ Unitful → ConstructionBaseUnitfulExt 1495.4 ms ✓ Unitful → PrintfExt 1376.3 ms ✓ Unitful → InverseFunctionsUnitfulExt 788.0 ms ✓ ConsoleProgressMonitor 676.7 ms ✓ Compat → CompatLinearAlgebraExt 761.8 ms ✓ PrecompileTools 968.3 ms ✓ JLLWrappers 3248.0 ms ✓ DispatchDoctor 1232.5 ms ✓ TruncatedStacktraces 1040.8 ms ✓ SciMLLogging 1001.5 ms ✓ Unityper 2387.2 ms ✓ Setfield 1252.8 ms ✓ AxisArrays 1879.9 ms ✓ NamedArrays 1100.5 ms ✓ Distances → DistancesSparseArraysExt 13447.7 ms ✓ Moshi 1237.4 ms ✓ DensityInterface 3901.8 ms ✓ Accessors 1653.1 ms ✓ TerminalLoggers 7203.9 ms ✓ SparseConnectivityTracer 2327.1 ms ✓ MLJModelInterface 871.3 ms ✓ SortingAlgorithms 1797.1 ms ✓ QuadGK 3878.8 ms ✓ MultivariatePolynomials 1054.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 654.5 ms ✓ LogExpFunctions → LogExpFunctionsChangesOfVariablesExt 671.1 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 815.4 ms ✓ PoissonRandom 985.5 ms ✓ LogDensityProblemsAD 1447.9 ms ✓ Tables 637.7 ms ✓ StridedViews → StridedViewsPtrArraysExt 964.6 ms ✓ Strided 949.7 ms ✓ ArrayInterface 1029.6 ms ✓ Adapt → AdaptSparseArraysExt 935.5 ms ✓ GPUArraysCore 648.2 ms ✓ EnzymeCore → AdaptExt 691.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1196.0 ms ✓ FillArrays → FillArraysPDMatsExt 2185.1 ms ✓ ChainRulesCore 1671.2 ms ✓ FilePathsBase 1016.3 ms ✓ Functors 2429.1 ms ✓ StringManipulation 10644.4 ms ✓ StaticArrays 10449.1 ms ✓ CommonMark 2279.1 ms ✓ RecipesBase 13129.1 ms ✓ Parsers 4055.4 ms ✓ Static 9345.1 ms ✓ SparseMatrixColorings 1129.6 ms ✓ Rmath_jll 1159.1 ms ✓ OpenSpecFun_jll 3394.3 ms ✓ IntelOpenMP_jll 3319.2 ms ✓ oneTBB_jll 1162.0 ms ✓ L_BFGS_B_jll 1172.7 ms ✓ FFTW_jll 1157.4 ms ✓ JpegTurbo_jll 756.8 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 7211.1 ms ✓ DynamicQuantities 2669.7 ms ✓ SplittablesBase 1297.0 ms ✓ Accessors → TestExt 2038.0 ms ✓ Accessors → IntervalSetsExt 1924.5 ms ✓ Accessors → LinearAlgebraExt 1413.0 ms ✓ Accessors → UnitfulExt 2455.6 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerNaNMathExt 2230.8 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerLogExpFunctionsExt 1422.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseConnectivityTracerExt 3563.3 ms ✓ StatsBase 3602.6 ms ✓ DynamicPolynomials 862.7 ms ✓ LogDensityProblemsAD → LogDensityProblemsADADTypesExt 1255.8 ms ✓ StructArrays 1663.0 ms ✓ TableOperations 627.6 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1710.1 ms ✓ MaybeInplace 1070.3 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 674.7 ms ✓ SciMLStructures 1357.5 ms ✓ PreallocationTools 657.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 657.5 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 1096.9 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 893.9 ms ✓ LazyStack 1875.0 ms ✓ ZygoteRules 740.6 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 661.2 ms ✓ ADTypes → ADTypesChainRulesCoreExt 711.9 ms ✓ Distances → DistancesChainRulesCoreExt 710.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 2462.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1047.4 ms ✓ TransmuteDims 1190.2 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 1461.7 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerChainRulesCoreExt 4377.4 ms ✓ MultivariatePolynomials → MultivariatePolynomialsChainRulesCoreExt 672.0 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 2076.4 ms ✓ FilePathsBase → FilePathsBaseTestExt 764.6 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2293.4 ms ✓ Optimisers 30136.8 ms ✓ PrettyTables 3103.8 ms ✓ ArnoldiMethod 1123.9 ms ✓ ResettableStacks 1138.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1187.9 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1145.5 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 3967.4 ms ✓ DomainSets 18838.7 ms ✓ ArrayLayouts 1151.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1123.3 ms ✓ Adapt → AdaptStaticArraysExt 1208.5 ms ✓ Accessors → StaticArraysExt 50355.4 ms ✓ JuliaFormatter 1079.5 ms ✓ IntervalSets → IntervalSetsRecipesBaseExt 3116.9 ms ✓ JSON 763.3 ms ✓ InlineStrings → ParsersExt 765.9 ms ✓ BitTwiddlingConvenienceFunctions 1768.9 ms ✓ CPUSummary 3144.0 ms ✓ StaticArrayInterface 1433.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 1200.5 ms ✓ Rmath 4141.7 ms ✓ SpecialFunctions  Downloading artifact: IntelOpenMP  Downloading artifact: oneTBB 7717.3 ms ✓ MKL_jll 792.7 ms ✓ LBFGSB 1241.7 ms ✓ Ghostscript_jll 1453.3 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 2888.6 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1369.6 ms ✓ BangBang 5604.6 ms ✓ Roots 3879.0 ms ✓ SciMLOperators 1174.4 ms ✓ PDMats → StatsBaseExt 862.7 ms ✓ LogDensityProblemsAD → LogDensityProblemsADDifferentiationInterfaceExt 1104.0 ms ✓ StructArrays → StructArraysSparseArraysExt 695.1 ms ✓ StructArrays → StructArraysLinearAlgebraExt 674.3 ms ✓ StructArrays → StructArraysAdaptExt 1277.4 ms ✓ StructArrays → StructArraysStaticArraysExt 811.0 ms ✓ Accessors → StructArraysExt 1087.1 ms ✓ FiniteDiff 2990.0 ms ✓ SymbolicIndexingInterface 1067.3 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1568.9 ms ✓ PreallocationTools → PreallocationToolsSparseConnectivityTracerExt 702.8 ms ✓ Optimisers → OptimisersEnzymeCoreExt 803.7 ms ✓ Optimisers → OptimisersAdaptExt 71291.4 ms ✓ DataFrames 7752.7 ms ✓ Graphs 1179.7 ms ✓ DomainSets → DomainSetsRandomExt 2808.0 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 3937.5 ms ✓ BlockArrays 3383.3 ms ✓ Interpolations 14919.0 ms ✓ TensorCast 1952.9 ms ✓ WeakRefStrings 1274.8 ms ✓ PolyesterWeave 817.2 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1237.8 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 855.8 ms ✓ CloseOpenIntervals 1012.5 ms ✓ LayoutPointers 3020.7 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1878.8 ms ✓ HypergeometricFunctions 1001.7 ms ✓ DiffRules 2787.1 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerSpecialFunctionsExt 4954.4 ms ✓ FFTW 4774.4 ms ✓ Latexify 908.8 ms ✓ BangBang → BangBangChainRulesCoreExt 862.5 ms ✓ BangBang → BangBangTablesExt 924.4 ms ✓ BangBang → BangBangStructArraysExt 1275.3 ms ✓ BangBang → BangBangStaticArraysExt 2031.3 ms ✓ MicroCollections 901.4 ms ✓ Roots → RootsChainRulesCoreExt 1432.9 ms ✓ Roots → RootsUnitfulExt 795.5 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1262.6 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 9587.4 ms ✓ ChainRules 1063.2 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1049.2 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 781.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2260.0 ms ✓ SymbolicIndexingInterface → SymbolicIndexingInterfacePrettyTablesExt 2928.7 ms ✓ RecursiveArrayTools 6088.3 ms ✓ BangBang → BangBangDataFramesExt 2459.9 ms ✓ BlockArrays → BlockArraysAdaptExt 2527.7 ms ✓ Interpolations → InterpolationsUnitfulExt 10268.4 ms ✓ DynamicHMC 22369.9 ms ✓ CSV 1540.0 ms ✓ StrideArraysCore 41425.2 ms ✓ SymbolicUtils 2180.8 ms ✓ StatsFuns 5198.8 ms ✓ ForwardDiff 1793.1 ms ✓ Latexify → SparseArraysExt 4833.5 ms ✓ Latexify → DataFramesExt 2816.5 ms ✓ Unitful → LatexifyExt 5772.1 ms ✓ Transducers 1268.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1363.6 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 940.0 ms ✓ RecursiveArrayTools → RecursiveArrayToolsTablesExt 1013.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsStructArraysExt 18831.0 ms ✓ SciMLBase 7306.9 ms ✓ StanBase 1475.0 ms ✓ Polyester 5986.6 ms ✓ SymbolicLimits 2599.1 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 772.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 7204.0 ms ✓ Distributions 1419.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1041.5 ms ✓ FastPower → FastPowerForwardDiffExt 1766.4 ms ✓ Unitful → ForwardDiffExt 1195.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1402.0 ms ✓ LogDensityProblemsAD → LogDensityProblemsADForwardDiffExt 1034.7 ms ✓ PreallocationTools → PreallocationToolsForwardDiffExt 1099.8 ms ✓ Roots → RootsForwardDiffExt 2183.6 ms ✓ Interpolations → InterpolationsForwardDiffExt 1144.4 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 4881.1 ms ✓ Transducers → TransducersDataFramesExt 1333.0 ms ✓ Transducers → TransducersAdaptExt 4206.9 ms ✓ Transducers → TransducersBlockArraysExt 3448.4 ms ✓ AbstractMCMC 2130.7 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2515.4 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 1962.9 ms ✓ SciMLBase → SciMLBaseDifferentiationInterfaceExt 2522.9 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2091.7 ms ✓ SCCNonlinearSolve ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 8440.5 ms ✓ StanSample 1474.1 ms ✓ FastBroadcast 2635.7 ms ✓ Distributions → DistributionsTestExt 2232.8 ms ✓ Distributions → DistributionsDensityInterfaceExt 2409.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 3563.3 ms ✓ MCMCDiagnosticTools 3000.3 ms ✓ SciMLBase → SciMLBaseDistributionsExt 2805.7 ms ✓ TransformVariables 1709.1 ms ✓ NLSolversBase 2688.9 ms ✓ LabelledArrays 5185.3 ms ✓ AdvancedHMC 3040.2 ms ✓ AbstractPPL 4425.1 ms ✓ OptimizationBase 5644.6 ms ✓ SciMLJacobianOperators 1447.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 3100.4 ms ✓ SSMProblems 3506.9 ms ✓ AdvancedMH 3052.1 ms ✓ EllipticalSliceSampling 3055.6 ms ✓ KernelDensity 3101.4 ms ✓ AdvancedVI 5706.0 ms ✓ Bijectors 6395.7 ms ✓ DistributionsAD 44688.8 ms ✓ Symbolics 1545.2 ms ✓ TransformVariables → ChangesOfVariablesExt 1564.2 ms ✓ TransformVariables → InverseFunctionsExt 1652.2 ms ✓ TransformedLogDensities 3337.0 ms ✓ LineSearches 4906.0 ms ✓ SymbolicUtils → SymbolicUtilsLabelledArraysExt 2567.0 ms ✓ AdvancedHMC → AdvancedHMCADTypesExt 657.1 ms ✓ OptimizationBase → OptimizationFiniteDiffExt 978.6 ms ✓ OptimizationBase → OptimizationForwardDiffExt 4195.8 ms ✓ Optimization 7905.3 ms ✓ LineSearch 12674.5 ms ✓ NonlinearSolveBase 4871.0 ms ✓ DiffEqBase 3272.6 ms ✓ AdvancedPS 2783.5 ms ✓ AdvancedMH → AdvancedMHStructArraysExt 2903.2 ms ✓ AdvancedMH → AdvancedMHForwardDiffExt 6509.3 ms ✓ MCMCChains 3186.4 ms ✓ Bijectors → BijectorsEnzymeCoreExt 2348.9 ms ✓ Bijectors → BijectorsForwardDiffExt 15177.0 ms ✓ DynamicPPL 2284.4 ms ✓ AdvancedVI → AdvancedVIBijectorsExt 2363.5 ms ✓ DistributionsAD → DistributionsADForwardDiffExt 2350.9 ms ✓ Bijectors → BijectorsDistributionsADExt 7885.8 ms ✓ Symbolics → SymbolicsForwardDiffExt 7279.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 4953.0 ms ✓ Optim 2382.4 ms ✓ LineSearch → LineSearchLineSearchesExt 2640.5 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 2594.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2122.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseChainRulesCoreExt 1991.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 2850.8 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 6124.4 ms ✓ BracketingNonlinearSolve 2772.4 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 3083.3 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 2691.1 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 2700.6 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 6752.7 ms ✓ DiffEqCallbacks 7407.1 ms ✓ OrdinaryDiffEqCore 3125.2 ms ✓ AdvancedPS → AdvancedPSLibtaskExt 4669.1 ms ✓ AdvancedHMC → AdvancedHMCMCMCChainsExt 4663.4 ms ✓ AdvancedMH → AdvancedMHMCMCChainsExt 3553.7 ms ✓ DynamicPPL → DynamicPPLChainRulesCoreExt 5475.9 ms ✓ DynamicPPL → DynamicPPLMCMCChainsExt 3479.5 ms ✓ DynamicPPL → DynamicPPLForwardDiffExt 3203.9 ms ✓ DynamicPPL → DynamicPPLEnzymeCoreExt 7207.1 ms ✓ Symbolics → SymbolicsPreallocationToolsExt 22482.4 ms ✓ OptimizationOptimJL 2471.6 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 5591.6 ms ✓ DiffEqNoiseProcess 2392.9 ms ✓ DiffEqCallbacks → DiffEqCallbacksFunctorsExt 5974.9 ms ✓ JumpProcesses 2564.6 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 10666.3 ms ✓ Turing 2364.5 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 13819.4 ms ✓ SimpleNonlinearSolve 8261.2 ms ✓ Turing → TuringOptimExt 8896.9 ms ✓ Turing → TuringDynamicHMCExt 2618.1 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 3427.5 ms ✓ ImplicitDiscreteSolve 245882.5 ms ✓ ModelingToolkit 27776.5 ms ✓ ModelingToolkit → MTKLabelledArraysExt 28495.0 ms ✓ OptimizationBase → OptimizationMTKExt ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 54424.2 ms ✓ DiffEqBayes 435 dependencies successfully precompiled in 1716 seconds. 40 already precompiled. 3 dependencies had output during precompilation: ┌ DiffEqBayes │ ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. │ └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 └ ┌ MKL_jll │ Downloading artifact: IntelOpenMP │ Downloading artifact: oneTBB └ ┌ StanSample │ ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. │ └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 └ Precompilation completed after 1729.12s ################################################################################ # Testing # Testing DiffEqBayes Status `/tmp/jl_5BvINl/Project.toml` [2b5f629d] DiffEqBase v6.191.0 [ebbdde9d] DiffEqBayes v3.9.0 [163ba53b] DiffResults v1.1.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [bbc10e6e] DynamicHMC v3.5.1 [f6369f11] ForwardDiff v1.3.0 [2ee39098] LabelledArrays v1.16.1 [996a588d] LogDensityProblemsAD v1.13.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [961ee093] ModelingToolkit v10.29.0 [429524aa] Optim v1.13.2 [1dea7af3] OrdinaryDiffEq v6.103.0 [90014a1f] PDMats v0.11.36 [65888b18] ParameterizedFunctions v5.19.0 [d96e819e] Parameters v0.12.3 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [1bc83da4] SafeTestsets v0.1.0 [53ae85a6] SciMLStructures v1.7.0 ⌃ [c1514b29] StanSample v7.1.1 [2913bbd2] StatsBase v0.34.8 [9672c7b4] SteadyStateDiffEq v2.8.0 [09ab397b] StructArrays v0.7.2 [84d833dd] TransformVariables v0.8.17 [f9bc47f6] TransformedLogDensities v1.1.1 ⌅ [fce5fe82] Turing v0.39.10 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_5BvINl/Manifest.toml` [47edcb42] ADTypes v1.19.0 [621f4979] AbstractFFTs v1.5.0 [80f14c24] AbstractMCMC v5.10.0 ⌅ [7a57a42e] AbstractPPL v0.12.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [0bf59076] AdvancedHMC v0.8.3 [5b7e9947] AdvancedMH v0.8.9 [576499cb] AdvancedPS v0.7.0 ⌅ [b5ca4192] AdvancedVI v0.4.1 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.1 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [e2ed5e7c] Bijections v0.2.2 [76274a88] Bijectors v0.15.12 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.6.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [0ca39b1e] Chairmarks v1.3.1 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 ⌅ [861a8166] Combinatorics v1.0.2 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [5224ae11] CompatHelperLocal v0.1.27 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [b429d917] DensityInterface v0.4.0 [2b5f629d] DiffEqBase v6.191.0 [ebbdde9d] DiffEqBayes v3.9.0 [459566f4] DiffEqCallbacks v4.10.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.12 [8d63f2c5] DispatchDoctor v0.4.26 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ced4e74d] DistributionsAD v0.6.58 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 [bbc10e6e] DynamicHMC v3.5.1 ⌅ [366bfd00] DynamicPPL v0.36.15 [7c1d4256] DynamicPolynomials v0.6.4 [06fc5a27] DynamicQuantities v1.10.0 [cad2338a] EllipticalSliceSampling v2.0.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.17 [d4d017d3] ExponentialUtilities v1.28.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7a1cc6ca] FFTW v1.10.0 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.1.0 [a4df4552] FastPower v1.2.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [64ca27bc] FindFirstFunctions v1.4.2 [6a86dc24] FiniteDiff v2.29.0 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.0 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.6 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [3263718b] ImplicitDiscreteSolve v1.2.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.19.1 [5ab0869b] KernelDensity v0.6.10 [ba0b0d4f] Krylov v0.10.2 [5be7bae1] LBFGSB v0.4.1 [b964fa9f] LaTeXStrings v1.4.0 [2ee39098] LabelledArrays v1.16.1 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.9.1 [1fad7336] LazyStack v0.1.3 [1d6d02ad] LeftChildRightSiblingTrees v0.2.1 [6f1fad26] Libtask v0.9.10 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.1 [7ed4a6bd] LinearSolve v3.47.0 [6fdf6af0] LogDensityProblems v2.2.0 [996a588d] LogDensityProblemsAD v1.13.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [c7f686f2] MCMCChains v7.6.0 [be115224] MCMCDiagnosticTools v0.3.15 [e80e1ace] MLJModelInterface v1.12.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [dbb5928d] MappedArrays v0.4.2 [bb5d69b7] MaybeInplace v0.1.4 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [dbe65cb8] MistyClosures v2.1.0 [961ee093] ModelingToolkit v10.29.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [102ac46a] MultivariatePolynomials v0.5.13 [d8a4904e] MutableArithmetics v1.6.7 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [86f7a689] NamedArrays v0.10.5 [d9ec5142] NamedTupleTools v0.14.3 [c020b1a1] NaturalSort v1.0.0 [8913a72c] NonlinearSolve v4.12.0 [be0214bd] NonlinearSolveBase v2.4.0 [5959db7a] NonlinearSolveFirstOrder v1.10.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.11.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 [3bd65402] Optimisers v0.4.6 ⌅ [7f7a1694] Optimization v4.8.0 ⌅ [bca83a33] OptimizationBase v2.14.0 ⌃ [36348300] OptimizationOptimJL v0.4.5 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.103.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.5.0 [6ad6398a] OrdinaryDiffEqBDF v1.10.1 [bbf590c4] OrdinaryDiffEqCore v1.36.0 [50262376] OrdinaryDiffEqDefault v1.8.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.16.1 [9286f039] OrdinaryDiffEqExplicitRK v1.4.0 [e0540318] OrdinaryDiffEqExponentialRK v1.8.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.9.0 [5960d6e9] OrdinaryDiffEqFIRK v1.16.0 [101fe9f7] OrdinaryDiffEqFeagin v1.4.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.5.0 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.5.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.7.0 [521117fe] OrdinaryDiffEqLinear v1.6.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.6.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.7.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.15.0 [c9986a66] OrdinaryDiffEqNordsieck v1.4.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.6.0 [5b33eab2] OrdinaryDiffEqPRK v1.4.0 [04162be5] OrdinaryDiffEqQPRK v1.4.0 [af6ede74] OrdinaryDiffEqRKN v1.5.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.18.1 [2d112036] OrdinaryDiffEqSDIRK v1.7.0 [669c94d9] OrdinaryDiffEqSSPRK v1.7.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.6.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.4.0 [fa646aed] OrdinaryDiffEqSymplecticRK v1.7.0 [b1df2697] OrdinaryDiffEqTsit5 v1.5.0 [79d7bb75] OrdinaryDiffEqVerner v1.6.0 [90014a1f] PDMats v0.11.36 [65ce6f38] PackageExtensionCompat v1.0.2 [65888b18] ParameterizedFunctions v5.19.0 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [e409e4f3] PoissonRandom v0.4.7 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.34 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.1 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.5 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.39.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [ae5879a3] ResettableStacks v1.1.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [9dfe8606] SCCNonlinearSolve v1.6.0 [94e857df] SIMDTypes v0.1.0 ⌅ [26aad666] SSMProblems v0.5.2 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.127.0 [19f34311] SciMLJacobianOperators v0.1.11 [a6db7da4] SciMLLogging v1.5.0 [c0aeaf25] SciMLOperators v1.12.0 [431bcebd] SciMLPublic v1.0.0 [53ae85a6] SciMLStructures v1.7.0 [30f210dd] ScientificTypesBase v3.0.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.9.0 [699a6c99] SimpleTraits v0.9.5 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [9f842d2f] SparseConnectivityTracer v1.1.3 [dc90abb0] SparseInverseSubset v0.1.2 [0a514795] SparseMatrixColorings v0.4.23 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [d0ee94f6] StanBase v4.12.2 ⌃ [c1514b29] StanSample v7.1.1 [aedffcd0] 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[84d833dd] TransformVariables v0.8.17 [f9bc47f6] TransformedLogDensities v1.1.1 [24ddb15e] TransmuteDims v0.1.17 [410a4b4d] Tricks v0.1.13 [781d530d] TruncatedStacktraces v1.4.0 [9d95972d] TupleTools v1.6.0 ⌅ [fce5fe82] Turing v0.39.10 [5c2747f8] URIs v1.6.1 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.25.1 [a7c27f48] Unityper v0.1.6 [ea10d353] WeakRefStrings v1.4.2 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 [700de1a5] ZygoteRules v0.2.7 [f5851436] FFTW_jll v3.3.11+0 [61579ee1] Ghostscript_jll v9.55.1+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.3+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 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OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!. └ @ StanBase ~/.julia/packages/StanBase/IgV1g/src/StanBase.jl:52 ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/KTR1R/src/utils.jl:121 ┌ Info: found initial stepsize └ ϵ = 0.2 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00025 │ estimated_seconds_left = 0.019 └ ϵ = 0.2 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 3.8e-5 │ estimated_seconds_left = 0.00091 └ ϵ = 0.000929 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0003729205760249618, 0.18677101701234491, 0.18413729561731174] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.015 │ estimated_seconds_left = 0.74 └ ϵ = 0.000222 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0001561903172503013, 0.22919709819380474, 0.2366530504271746] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00011 │ estimated_seconds_left = 0.011 └ ϵ = 0.321 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00014976654406423663, 0.2546229897561916, 0.20558250368870162] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 4.9e-5 │ estimated_seconds_left = 0.0097 └ ϵ = 0.798 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00016 │ estimated_seconds_left = 0.016 └ ϵ = 0.911 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00017027512152524517, 0.31244388877991197, 0.232592046679214] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00011 │ estimated_seconds_left = 0.044 └ ϵ = 0.824 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00018 │ estimated_seconds_left = 0.055 └ ϵ = 0.188 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00032 │ estimated_seconds_left = 0.063 └ ϵ = 0.791 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00012 │ estimated_seconds_left = 0.012 └ ϵ = 0.796 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00016053232454894578, 0.27192546660116446, 0.23521409946456695] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00011 │ estimated_seconds_left = 0.0055 └ ϵ = 0.77 ┌ Info: Starting MCMC └ total_steps = 1000 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 8.4e-5 └ estimated_seconds_left = 0.084 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00046 └ estimated_seconds_left = 0.41 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.13 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.11 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.096 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.00017 └ estimated_seconds_left = 0.084 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.00015 └ estimated_seconds_left = 0.06 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.049 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.00017 └ estimated_seconds_left = 0.033 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.016 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Info: found initial stepsize └ ϵ = 0.0125 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 4.8e-5 │ estimated_seconds_left = 0.0035 └ ϵ = 0.0125 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.016 │ estimated_seconds_left = 0.39 └ ϵ = 0.000302 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0019866425729255883, 0.004309295301298757, 0.0006958593454445541, 0.13716647700776266, 0.1703385180563964] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.017 │ estimated_seconds_left = 0.84 └ ϵ = 0.000203 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0018987294106416774, 0.0038700034592523006, 0.0006296212048520443, 0.2746877252514114, 0.32176448499546184] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00053 │ estimated_seconds_left = 0.053 └ ϵ = 0.181 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0017029155521086775, 0.00356505298337167, 0.0005489751817722748, 0.19809266552013594, 0.2618304089935142] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.052 └ ϵ = 0.213 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00085 │ estimated_seconds_left = 0.085 └ ϵ = 0.401 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0018380668886014578, 0.003105324118098557, 0.0006343916151601833, 0.26186446399137153, 0.30277386904731757] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.11 └ ϵ = 0.268 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.0008 │ estimated_seconds_left = 0.24 └ ϵ = 0.324 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.0006 │ estimated_seconds_left = 0.12 └ ϵ = 0.169 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00056 │ estimated_seconds_left = 0.056 └ ϵ = 0.161 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0021192828210715438, 0.003810832192862726, 0.0007284608024503928, 0.2905633455632399, 0.2940632684198485] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.013 └ ϵ = 0.234 ┌ Info: Starting MCMC └ total_steps = 1000 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00026 └ estimated_seconds_left = 0.26 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.0008 └ estimated_seconds_left = 0.72 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00075 └ estimated_seconds_left = 0.6 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00086 └ estimated_seconds_left = 0.6 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00073 └ estimated_seconds_left = 0.44 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.00071 └ estimated_seconds_left = 0.35 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.00084 └ estimated_seconds_left = 0.33 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.0007 └ estimated_seconds_left = 0.21 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.00089 └ estimated_seconds_left = 0.18 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.00072 └ estimated_seconds_left = 0.071 ┌ Info: found initial stepsize └ ϵ = 0.2 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.0e-5 │ estimated_seconds_left = 0.0037 └ ϵ = 0.2 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00012 │ estimated_seconds_left = 0.0028 └ ϵ = 0.00193 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0007918340984971245, 0.18396457209062522] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.019 │ estimated_seconds_left = 0.94 └ ϵ = 0.000601 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00026015173881081035, 0.3265987988021881] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00013 │ estimated_seconds_left = 0.013 └ ϵ = 0.281 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00017237657443989213, 0.2654006271375255] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00014 │ estimated_seconds_left = 0.027 └ ϵ = 0.62 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00018 │ estimated_seconds_left = 0.018 └ ϵ = 1.41 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00021566204449874725, 0.260316049324061] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.8e-5 │ estimated_seconds_left = 0.023 └ ϵ = 0.848 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00018 │ estimated_seconds_left = 0.054 └ ϵ = 0.985 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00088 │ estimated_seconds_left = 0.17 └ ϵ = 0.538 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00012 │ estimated_seconds_left = 0.012 └ ϵ = 1.28 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.00020003520485606968, 0.2706495704173422] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.7e-5 │ estimated_seconds_left = 0.0028 └ ϵ = 0.833 ┌ Info: Starting MCMC └ total_steps = 1000 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00012 └ estimated_seconds_left = 0.12 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00017 └ estimated_seconds_left = 0.15 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00015 └ estimated_seconds_left = 0.12 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.11 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.097 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.00017 └ estimated_seconds_left = 0.084 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.064 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.049 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.00016 └ estimated_seconds_left = 0.033 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.00015 └ estimated_seconds_left = 0.015 ┌ Warning: First function call produced NaNs. Exiting. Double check that none of the initial conditions, parameters, or timespan values are NaN. └ @ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/GMkz9/src/initdt.jl:132 ┌ Warning: At t=0.0, dt was forced below floating point epsilon 5.0e-324, and step error estimate = NaN. Aborting. There is either an error in your model specification or the true solution is unstable (or the true solution can not be represented in the precision of ForwardDiff.Dual{ForwardDiff.Tag{Base.Fix1{typeof(LogDensityProblems.logdensity), TransformedLogDensities.TransformedLogDensity{TransformVariables.TransformTuple{@NamedTuple{parameters::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}, σ::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}}}, DiffEqBayes.DynamicHMCPosterior{OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, Main.var"##DynamicHMC#141".LotkaVolterraTest1{Main.var"##DynamicHMC#141".var"###ParameterizedDiffEqFunction#144", Main.var"##DynamicHMC#141".var"###ParameterizedTGradFunction#145", Main.var"##DynamicHMC#141".var"###ParameterizedJacobianFunction#146", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Matrix{Float64}, Vector{Float64}, Vector{Distributions.Normal{Float64}}, Vector{Distributions.Normal{Float64}}, Tuple{}, Vector{Int64}, typeof(identity)}}}, Float64}, Float64, 3}). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:671 ┌ Warning: At t=2.5112519064391033e-270, dt was forced below floating point epsilon 4.2030456845295373e-286, and step error estimate = NaN. Aborting. There is either an error in your model specification or the true solution is unstable (or the true solution can not be represented in the precision of ForwardDiff.Dual{ForwardDiff.Tag{Base.Fix1{typeof(LogDensityProblems.logdensity), TransformedLogDensities.TransformedLogDensity{TransformVariables.TransformTuple{@NamedTuple{parameters::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}, σ::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}}}, DiffEqBayes.DynamicHMCPosterior{OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, Main.var"##DynamicHMC#141".LotkaVolterraTest1{Main.var"##DynamicHMC#141".var"###ParameterizedDiffEqFunction#144", Main.var"##DynamicHMC#141".var"###ParameterizedTGradFunction#145", Main.var"##DynamicHMC#141".var"###ParameterizedJacobianFunction#146", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Matrix{Float64}, Vector{Float64}, Vector{Distributions.Normal{Float64}}, Vector{Distributions.Normal{Float64}}, Tuple{}, Vector{Int64}, typeof(identity)}}}, Float64}, Float64, 3}). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:671 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Info: found initial stepsize └ ϵ = 0.00156 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.4e-5 │ estimated_seconds_left = 0.004 └ ϵ = 0.00156 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0011 │ estimated_seconds_left = 0.027 └ ϵ = 0.00072 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0014242607858651235, 0.0005702000446923803, 0.1466797435605004] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.051 │ estimated_seconds_left = 2.5 └ ϵ = 0.000532 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0007013061506091276, 0.00033409645439169656, 0.6390013669570062] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00013 │ estimated_seconds_left = 0.013 └ ϵ = 0.252 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0006861287667823341, 0.00026369956961339725, 0.2652045482428888] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00027 │ estimated_seconds_left = 0.053 └ ϵ = 0.304 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00031 │ estimated_seconds_left = 0.03 └ ϵ = 0.74 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0007885610522920792, 0.0002655821422314411, 0.26927238422549327] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 6.3e-5 │ estimated_seconds_left = 0.025 └ ϵ = 0.579 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00027 │ estimated_seconds_left = 0.079 └ ϵ = 0.439 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00023 │ estimated_seconds_left = 0.046 └ ϵ = 0.763 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.02 └ ϵ = 0.682 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0008405176339064267, 0.00030380291562871704, 0.25605164281672715] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.8e-5 │ estimated_seconds_left = 0.0029 └ ϵ = 0.565 ┌ Info: Starting MCMC └ total_steps = 1000 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00012 └ estimated_seconds_left = 0.12 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00028 └ estimated_seconds_left = 0.25 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00036 └ estimated_seconds_left = 0.29 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00063 └ estimated_seconds_left = 0.44 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00029 └ estimated_seconds_left = 0.17 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.00029 └ estimated_seconds_left = 0.15 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.0003 └ estimated_seconds_left = 0.12 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.00029 └ estimated_seconds_left = 0.088 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.0003 └ estimated_seconds_left = 0.059 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.0003 └ estimated_seconds_left = 0.03 ┌ Warning: Assignment to `bayesian_result` in soft scope is ambiguous because a global variable by the same name exists: `bayesian_result` will be treated as a new local. Disambiguate by using `local bayesian_result` to suppress this warning or `global bayesian_result` to assign to the existing global variable. └ @ ~/.julia/packages/DiffEqBayes/CpDUh/test/dynamicHMC.jl:69 ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/KTR1R/src/utils.jl:121 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Warning: First function call produced NaNs. Exiting. Double check that none of the initial conditions, parameters, or timespan values are NaN. └ @ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/GMkz9/src/initdt.jl:132 ┌ Warning: At t=0.0, dt was forced below floating point epsilon 5.0e-324, and step error estimate = NaN. Aborting. There is either an error in your model specification or the true solution is unstable (or the true solution can not be represented in the precision of ForwardDiff.Dual{ForwardDiff.Tag{Base.Fix1{typeof(LogDensityProblems.logdensity), TransformedLogDensities.TransformedLogDensity{TransformVariables.TransformTuple{@NamedTuple{parameters::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}, σ::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}}}, DiffEqBayes.DynamicHMCPosterior{OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, Main.var"##DynamicHMC#141".LotkaVolterraTest4{Main.var"##DynamicHMC#141".var"###ParameterizedDiffEqFunction#151", Main.var"##DynamicHMC#141".var"###ParameterizedTGradFunction#152", Main.var"##DynamicHMC#141".var"###ParameterizedJacobianFunction#153", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Matrix{Float64}, Vector{Float64}, @NamedTuple{a::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, b::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, c::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, d::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}}, Vector{Distributions.Normal{Float64}}, Tuple{}, Nothing, typeof(identity)}}}, Float64}, Float64, 6}). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:671 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.014 │ estimated_seconds_left = 1.1 └ ϵ = 1.0 ┌ Warning: First function call produced NaNs. Exiting. Double check that none of the initial conditions, parameters, or timespan values are NaN. └ @ OrdinaryDiffEqCore ~/.julia/packages/OrdinaryDiffEqCore/GMkz9/src/initdt.jl:132 ┌ Warning: At t=0.0, dt was forced below floating point epsilon 5.0e-324, and step error estimate = NaN. Aborting. There is either an error in your model specification or the true solution is unstable (or the true solution can not be represented in the precision of ForwardDiff.Dual{ForwardDiff.Tag{Base.Fix1{typeof(LogDensityProblems.logdensity), TransformedLogDensities.TransformedLogDensity{TransformVariables.TransformTuple{@NamedTuple{parameters::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}, σ::TransformVariables.ArrayTransformation{TransformVariables.TVExp, 1}}}, DiffEqBayes.DynamicHMCPosterior{OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, SciMLBase.ODEProblem{Vector{Float64}, Tuple{Float64, Float64}, true, Vector{Float64}, Main.var"##DynamicHMC#141".LotkaVolterraTest4{Main.var"##DynamicHMC#141".var"###ParameterizedDiffEqFunction#151", Main.var"##DynamicHMC#141".var"###ParameterizedTGradFunction#152", Main.var"##DynamicHMC#141".var"###ParameterizedJacobianFunction#153", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, @NamedTuple{}}, SciMLBase.StandardODEProblem}, Matrix{Float64}, Vector{Float64}, @NamedTuple{a::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, b::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, c::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}, d::Distributions.Truncated{Distributions.Normal{Float64}, Distributions.Continuous, Float64, Float64, Float64}}, Vector{Distributions.Normal{Float64}}, Tuple{}, Nothing, typeof(identity)}}}, Float64}, Float64, 6}). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:671 ┌ Warning: Interrupted. Larger maxiters is needed. If you are using an integrator for non-stiff ODEs or an automatic switching algorithm (the default), you may want to consider using a method for stiff equations. See the solver pages for more details (e.g. https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/#Stiff-Problems). └ @ SciMLBase ~/.julia/packages/SciMLBase/TZ9Rx/src/integrator_interface.jl:626 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.024 │ estimated_seconds_left = 0.59 └ ϵ = 0.000435 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.001359745939890313, 0.003361084144588947, 0.0017806305080691428, 0.002594853792158231, 0.1329287549757263, 0.11897927388377415] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.031 │ estimated_seconds_left = 1.5 └ ϵ = 0.000205 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0009152891779137399, 0.0011595319728029843, 0.001326554651522204, 0.0013925210013547163, 0.3548213439945691, 0.22733704747806568] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0033 │ estimated_seconds_left = 0.32 └ ϵ = 0.0389 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0008626982026221685, 0.0014298255966047114, 0.0012359649332411864, 0.0013620015067329053, 0.24611005059672234, 0.28335389031924] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0016 │ estimated_seconds_left = 0.32 └ ϵ = 0.0831 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.0027 │ estimated_seconds_left = 0.27 └ ϵ = 0.124 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.001040379170188716, 0.0014634726815733981, 0.0015609733014531092, 0.001614093047588345, 0.30724980982052785, 0.3006933741172545] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and LinearAlgebra.Diagonal metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00081 │ estimated_seconds_left = 0.32 └ ϵ = 0.096 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.0025 │ estimated_seconds_left = 0.74 └ ϵ = 0.149 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.002 │ estimated_seconds_left = 0.4 └ ϵ = 0.0954 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.0019 │ estimated_seconds_left = 0.19 └ ϵ = 0.142 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Diagonal), √diag(M⁻¹): [0.0009965498287900912, 0.0015246422789209338, 0.001442210013022616, 0.0015277153193374797, 0.27863461909133364, 0.24445582961490717] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0012 │ estimated_seconds_left = 0.059 └ ϵ = 0.0837 ┌ Info: Starting MCMC └ total_steps = 1000 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0016 └ estimated_seconds_left = 1.6 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.002 └ estimated_seconds_left = 1.8 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.0022 └ estimated_seconds_left = 1.7 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.0022 └ estimated_seconds_left = 1.5 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.0022 └ estimated_seconds_left = 1.3 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.0021 └ estimated_seconds_left = 1.0 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.0019 └ estimated_seconds_left = 0.76 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.0023 └ estimated_seconds_left = 0.69 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.0022 └ estimated_seconds_left = 0.44 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.0021 └ estimated_seconds_left = 0.21 Test Summary: | Pass Broken Total Time DynamicHMC | 8 2 10 12m33.0s 753.801013 seconds (209.12 M allocations: 12.634 GiB, 0.66% gc time, 16.99% compilation time: 16% of which was recompilation) One parameter case ┌ Warning: Independent variable t should be defined with @independent_variables t. └ @ ModelingToolkit ~/.julia/packages/ModelingToolkit/KTR1R/src/utils.jl:121 ┌ Info: Found initial step size └ ϵ = 0.00625 bayesian_result = MCMC chain (500×14×1 Array{Float64, 3}) ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice(ad_alg::Bool, ::Val{0}, ::Val{:forward}) at misc_utils.jl:158 └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/GMkz9/src/misc_utils.jl:158 ┌ Info: Found initial step size └ ϵ = 0.0125 ┌ Info: Found initial step size └ ϵ = 0.00625 Multithreaded case ┌ Warning: Only a single thread available: MCMC chains are not sampled in parallel └ @ AbstractMCMC ~/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:432 ┌ Info: Found initial step size └ ϵ = 0.0125 ┌ Info: Found initial step size └ ϵ = 0.00625 ┌ Info: Found initial step size └ ϵ = 0.00625 ┌ Info: Found initial step size └ ϵ = 0.0125 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 2090 running 1 of 1 signal (10): User defined signal 1 typekeyvalue_eq at /source/src/jltypes.c:1015 [inlined] lookup_type_setvalue at /source/src/jltypes.c:1074 [inlined] lookup_typevalue at /source/src/jltypes.c:1146 jl_inst_arg_tuple_type at /source/src/jltypes.c:2486 arg_tuple at /source/src/builtins.c:943 maybeview at ./views.jl:236 unknown function (ip: 0x70b95e6f7a3b) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 infer at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/src/turing_inference.jl:66 _evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/nxcz4/src/model.jl:913 [inlined] evaluate_threadunsafe!! at /home/pkgeval/.julia/packages/DynamicPPL/nxcz4/src/model.jl:886 [inlined] evaluate!! at /home/pkgeval/.julia/packages/DynamicPPL/nxcz4/src/model.jl:834 [inlined] values_as_in_model at /home/pkgeval/.julia/packages/DynamicPPL/nxcz4/src/values_as_in_model.jl:173 values_as_in_model at /home/pkgeval/.julia/packages/DynamicPPL/nxcz4/src/values_as_in_model.jl:172 [inlined] getparams at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/Inference.jl:193 [inlined] Transition at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/Inference.jl:141 unknown function (ip: 0x70b924468296) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #step#31 at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/hmc.jl:297 step at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/hmc.jl:257 unknown function (ip: 0x70b92446c880) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:0 [inlined] #27 at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/logging.jl:134 with_logstate at ./logging/logging.jl:540 unknown function (ip: 0x70b924408201) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 with_logger at ./logging/logging.jl:651 with_progresslogger at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/logging.jl:157 unknown function (ip: 0x70b955ae3b8e) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/logging.jl:133 [inlined] #mcmcsample#25 at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:168 mcmcsample at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:123 #sample#28 at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/hmc.jl:117 [inlined] sample at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/hmc.jl:86 unknown function (ip: 0x70b924404c93) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 sample_chain at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:785 #Generator##0 at ./generator.jl:37 [inlined] iterate at ./generator.jl:48 [inlined] collect at ./array.jl:828 map at ./abstractarray.jl:3544 [inlined] #mcmcsample#106 at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:798 mcmcsample at /home/pkgeval/.julia/packages/AbstractMCMC/mcqES/src/sample.jl:745 unknown function (ip: 0x70b9245f95d7) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #sample#109 at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:70 sample at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:59 [inlined] #sample#108 at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:56 [inlined] sample at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:45 [inlined] #sample#107 at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:40 [inlined] sample at /home/pkgeval/.julia/packages/Turing/EEhvQ/src/mcmc/abstractmcmc.jl:32 unknown function (ip: 0x70b9245d609c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 #turing_inference#1 at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/src/turing_inference.jl:75 turing_inference at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/src/turing_inference.jl:1 unknown function (ip: 0x70b9245cf67c) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 unknown function (ip: 0x70b97292ed52) at (unknown file) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 eval_body at /source/src/interpreter.c:550 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_eval_module_expr at /source/src/toplevel.c:248 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:650 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 jfptr_eval_16052.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 macro expansion at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] macro expansion at ./timing.jl:730 [inlined] top-level scope at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/test/runtests.jl:10 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_invoke at /source/src/gf.c:4123 jl_toplevel_eval_flex at /source/src/toplevel.c:731 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 include_string at ./loading.jl:3003 _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 _include at ./loading.jl:3063 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_57996.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:679 jl_interpret_toplevel_thunk at /source/src/interpreter.c:884 jl_toplevel_eval_flex at /source/src/toplevel.c:742 jl_eval_toplevel_stmts at /source/src/toplevel.c:585 jl_toplevel_eval_flex at /source/src/toplevel.c:683 ijl_toplevel_eval at /source/src/toplevel.c:754 ijl_toplevel_eval_in at /source/src/toplevel.c:799 eval at ./boot.jl:489 exec_options at ./client.jl:310 _start at ./client.jl:577 jfptr__start_51725.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1138 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x70b97428b249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) #= 20.1 ms =# precompile(Tuple{typeof(Core.kwcall), NamedTuple{(:nadapts, :initial_params, :chain_number), Tuple{Int64, Nothing, Int64}}, typeof(AbstractMCMC.samples), Turing.Inference.Transition{OrderedCollections.OrderedDict{Any, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, DynamicPPL.Model{DiffEqBayes.var"#infer#6"{Array{Distributions.InverseGamma{Float64}, 1}, DiffEqBayes.var"#turing_inference##4#turing_inference##5", Array{Symbol, 1}, Bool, Bool, Base.Dict{Symbol, Union{Nothing, Array{Int64, 1}}}, SciMLBase.ODEProblem{Array{Float64, 1}, Tuple{Float64, Float64}, true, Array{Float64, 1}, var"##Turing#142".var"##157"{var"##Turing#142".var"###ParameterizedDiffEqFunction#159", var"##Turing#142".var"###ParameterizedTGradFunction#160", var"##Turing#142".var"###ParameterizedJacobianFunction#161", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, NamedTuple{(), Tuple{}}}, SciMLBase.StandardODEProblem}, OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Array{Float64, 1}, Array{Distributions.Normal{Float64}, 1}, SciMLStructures.ArrayRepack{Array{Float64, 1}}}, (:x, :var"##arg#141"), (), (), Tuple{Array{Float64, 2}, DynamicPPL.TypeWrap{Float64}}, Tuple{}, DynamicPPL.DefaultContext}, DynamicPPL.Sampler{Turing.Inference.NUTS{ADTypes.AutoForwardDiff{nothing, Nothing}, AdvancedHMC.DiagEuclideanMetric{T, A} where A<:Union{AbstractArray{T, 1}, AbstractArray{T, 2}} where T}}, Int64}) #= 24.0 ms =# precompile(Tuple{typeof(Core.kwcall), NamedTuple{(:nadapts, :initial_params, :chain_number), Tuple{Int64, Nothing, Int64}}, typeof(AbstractMCMC.save!!), Array{Turing.Inference.Transition{OrderedCollections.OrderedDict{Any, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, 1}, Turing.Inference.Transition{OrderedCollections.OrderedDict{Any, Any}, Float64, NamedTuple{(:n_steps, :is_accept, :acceptance_rate, :log_density, :hamiltonian_energy, :hamiltonian_energy_error, :max_hamiltonian_energy_error, :tree_depth, :numerical_error, :step_size, :nom_step_size), Tuple{Int64, Bool, Float64, Float64, Float64, Float64, Float64, Int64, Bool, Float64, Float64}}}, Int64, DynamicPPL.Model{DiffEqBayes.var"#infer#6"{Array{Distributions.InverseGamma{Float64}, 1}, DiffEqBayes.var"#turing_inference##4#turing_inference##5", Array{Symbol, 1}, Bool, Bool, Base.Dict{Symbol, Union{Nothing, Array{Int64, 1}}}, SciMLBase.ODEProblem{Array{Float64, 1}, Tuple{Float64, Float64}, true, Array{Float64, 1}, var"##Turing#142".var"##157"{var"##Turing#142".var"###ParameterizedDiffEqFunction#159", var"##Turing#142".var"###ParameterizedTGradFunction#160", var"##Turing#142".var"###ParameterizedJacobianFunction#161", Nothing, Nothing, ModelingToolkit.System}, Base.Pairs{Symbol, Union{}, Nothing, NamedTuple{(), Tuple{}}}, SciMLBase.StandardODEProblem}, OrdinaryDiffEqTsit5.Tsit5{typeof(OrdinaryDiffEqCore.trivial_limiter!), typeof(OrdinaryDiffEqCore.trivial_limiter!), Static.False}, Array{Float64, 1}, Array{Distributions.Normal{Float64}, 1}, SciMLStructures.ArrayRepack{Array{Float64, 1}}}, (:x, :var"##arg#141"), (), (), Tuple{Array{Float64, 2}, DynamicPPL.TypeWrap{Float64}}, Tuple{}, DynamicPPL.DefaultContext}, DynamicPPL.Sampler{Turing.Inference.NUTS{ADTypes.AutoForwardDiff{nothing, Nothing}, AdvancedHMC.DiagEuclideanMetric{T, A} where A<:Union{AbstractArray{T, 1}, AbstractArray{T, 2}} where T}}, Int64}) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile. --trace-compile is enabled during profile collection. ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1246 wait_forever at ./task.jl:1168 jfptr_wait_forever_74812.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4116 [inlined] ijl_apply_generic at /source/src/gf.c:4313 jl_apply at /source/src/julia.h:2284 [inlined] start_task at /source/src/task.c:1272 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point. Disabling --trace-compile ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.14/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000790ebce07b20 Total snapshots: 667. Utilization: 0% ╎667 @Base/task.jl:1168 wait_forever() 666╎ 667 @Base/task.jl:1246 wait() ┌ Info: Found initial step size └ ϵ = 0.0125 Four parameter case [2090] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/DiffEqBayes/CpDUh/test/turing.jl:68 _ZN12_GLOBAL__N_115FixupBWInstPass20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) PkgEval terminated after 2720.61s: test duration exceeded the time limit