Package evaluation to test Surrogates on Julia 1.14.0-DEV.1260 (89243d1cdf*) started at 2025-11-16T21:13:55.797 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.17s ################################################################################ # Installation # Installing Surrogates... Resolving package versions... Installed Rmath_jll ─────────────────── v0.5.1+0 Installed CompositionsBase ──────────── v0.1.2 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed ForwardDiff ───────────────── v1.3.0 Installed GLM ───────────────────────── v1.9.0 Installed FillArrays ────────────────── v1.15.0 Installed DataStructures ────────────── v0.19.3 Installed Adapt ─────────────────────── v4.4.0 Installed DelimitedFiles ────────────── v1.9.1 Installed HypergeometricFunctions ───── v0.3.28 Installed AliasTables ───────────────── v1.1.3 Installed ConstructionBase ──────────── v1.6.0 Installed StatsModels ───────────────── v0.7.7 Installed SurrogatesBase ────────────── v1.1.0 Installed StatsBase ─────────────────── v0.34.8 Installed SparseInverseSubset ───────── v0.1.2 Installed OrderedCollections ────────── v1.8.1 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed RecipesBase ───────────────── v1.3.4 Installed ShiftedArrays ─────────────── v2.0.0 Installed LatticeRules ──────────────── v0.0.1 Installed DataAPI ───────────────────── v1.16.0 Installed Statistics ────────────────── v1.11.1 Installed Zygote ────────────────────── v0.7.10 Installed StatsAPI ──────────────────── v1.7.1 Installed Sparspak ──────────────────── v0.3.14 Installed DataValueInterfaces ───────── v1.0.0 Installed StructArrays ──────────────── v0.7.2 Installed PrecompileTools ───────────── v1.3.3 Installed ChainRules ────────────────── v1.72.6 Installed CommonSubexpressions ──────── v0.3.1 Installed OffsetArrays ──────────────── v1.17.0 Installed StaticArraysCore ──────────── v1.4.4 Installed RealDot ───────────────────── v0.1.0 Installed ConcreteStructs ───────────── v0.2.3 Installed StaticArrays ──────────────── v1.9.15 Installed ChainRulesCore ────────────── v1.26.0 Installed IrrationalConstants ───────── v0.2.6 Installed GPUArraysCore ─────────────── v0.2.0 Installed AbstractFFTs ──────────────── v1.5.0 Installed IntegerMathUtils ──────────── v0.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed ExtendableSparse ──────────── v1.7.1 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.9.0 Installed DiffRules ─────────────────── v1.15.1 Installed Distributions ─────────────── v0.25.122 Installed Sobol ─────────────────────── v1.5.0 Installed StatsFuns ─────────────────── v1.5.2 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed IRTools ───────────────────── v0.4.15 Installed SpecialFunctions ──────────── v2.6.1 Installed InverseFunctions ──────────── v0.1.17 Installed Surrogates ────────────────── v7.0.1 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed ZygoteRules ───────────────── v0.2.7 Installed JLLWrappers ───────────────── v1.7.1 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.5.0 Installed IterativeSolvers ──────────── v0.9.4 Installed QuasiMonteCarlo ───────────── v0.3.3 Installed ILUZero ───────────────────── v0.2.0 Installed PDMats ────────────────────── v0.11.36 Installed Primes ────────────────────── v0.5.7 Installed SortingAlgorithms ─────────── v1.2.2 Installed DocStringExtensions ───────── v0.9.5 Installed Accessors ─────────────────── v0.1.42 Installing 2 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [6fc51010] + Surrogates v7.0.1 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [95c220a8] + ExtendableSparse v1.7.1 [1a297f60] + FillArrays v1.15.0 [f6369f11] + ForwardDiff v1.3.0 [38e38edf] + GLM v1.9.0 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [88f59080] + ILUZero v0.2.0 [7869d1d1] + IRTools v0.4.15 [18e54dd8] + IntegerMathUtils v0.1.3 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [73f95e8e] + LatticeRules v0.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [8a4e6c94] + QuasiMonteCarlo v0.3.3 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [1277b4bf] + ShiftedArrays v2.0.0 [ed01d8cd] + Sobol v1.5.0 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [e56a9233] + Sparspak v0.3.14 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [09ab397b] + StructArrays v0.7.2 [6fc51010] + Surrogates v7.0.1 [89f642e6] + SurrogatesBase v1.1.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 9.16s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4490.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4178.8 ms ✓ MacroTools 813.5 ms ✓ Reexport 1147.9 ms ✓ Statistics 877.6 ms ✓ DataAPI 1156.2 ms ✓ ConstructionBase 2346.8 ms ✓ IrrationalConstants 826.7 ms ✓ RealDot 788.1 ms ✓ DataValueInterfaces 1005.8 ms ✓ StaticArraysCore 863.6 ms ✓ StatsAPI 890.1 ms ✓ ConcreteStructs 1236.5 ms ✓ Requires 1993.9 ms ✓ OrderedCollections 1292.0 ms ✓ InverseFunctions 1100.4 ms ✓ LatticeRules 1270.2 ms ✓ CompositionsBase 1489.1 ms ✓ DocStringExtensions 905.6 ms ✓ ShiftedArrays 1068.6 ms ✓ AbstractFFTs 1677.5 ms ✓ OffsetArrays 2303.6 ms ✓ FillArrays 803.1 ms ✓ SurrogatesBase 847.0 ms ✓ IntegerMathUtils 1178.8 ms ✓ PtrArrays 1419.6 ms ✓ IteratorInterfaceExtensions 1400.8 ms ✓ SuiteSparse 1438.5 ms ✓ ILUZero 1057.5 ms ✓ NaNMath 998.5 ms ✓ DelimitedFiles 1603.6 ms ✓ Compat 1395.7 ms ✓ Preferences 2144.1 ms ✓ CommonSubexpressions 4468.6 ms ✓ IRTools 1314.5 ms ✓ Statistics → SparseArraysExt 993.4 ms ✓ Missings 792.1 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 872.0 ms ✓ DiffResults 972.4 ms ✓ Adapt 3664.2 ms ✓ DataStructures 1683.5 ms ✓ InverseFunctions → InverseFunctionsTestExt 870.2 ms ✓ InverseFunctions → InverseFunctionsDatesExt 835.6 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1453.7 ms ✓ LogExpFunctions 4278.0 ms ✓ AbstractFFTs → AbstractFFTsTestExt 2784.2 ms ✓ Sparspak 1548.3 ms ✓ FillArrays → FillArraysSparseArraysExt 997.5 ms ✓ FillArrays → FillArraysStatisticsExt 1167.0 ms ✓ Primes 988.5 ms ✓ AliasTables 784.1 ms ✓ TableTraits 1309.6 ms ✓ SparseInverseSubset 1863.1 ms ✓ PDMats 2440.0 ms ✓ Sobol 879.9 ms ✓ Compat → CompatLinearAlgebraExt 1243.5 ms ✓ JLLWrappers 941.6 ms ✓ PrecompileTools 1223.8 ms ✓ GPUArraysCore 1246.2 ms ✓ Adapt → AdaptSparseArraysExt 845.9 ms ✓ OffsetArrays → OffsetArraysAdaptExt 1094.6 ms ✓ SortingAlgorithms 2393.1 ms ✓ QuadGK 5122.1 ms ✓ Accessors 824.7 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1816.4 ms ✓ Tables 2400.5 ms ✓ FillArrays → FillArraysPDMatsExt 3208.6 ms ✓ ChainRulesCore 1593.4 ms ✓ Rmath_jll 1476.6 ms ✓ OpenSpecFun_jll 2887.5 ms ✓ RecipesBase 13930.4 ms ✓ StaticArrays 4589.9 ms ✓ StatsBase 2581.6 ms ✓ Accessors → LinearAlgebraExt 1753.8 ms ✓ Accessors → TestExt 1604.6 ms ✓ StructArrays 1431.8 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2488.5 ms ✓ ZygoteRules 932.9 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 3234.7 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1519.9 ms ✓ Rmath 5371.8 ms ✓ SpecialFunctions 4190.5 ms ✓ IterativeSolvers 1467.1 ms ✓ StaticArrays → StaticArraysStatisticsExt 1495.4 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1455.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1562.8 ms ✓ Adapt → AdaptStaticArraysExt 4325.7 ms ✓ ExtendableSparse 1597.6 ms ✓ Accessors → StaticArraysExt 1478.7 ms ✓ PDMats → StatsBaseExt 6821.4 ms ✓ QuasiMonteCarlo 1350.4 ms ✓ StructArrays → StructArraysSparseArraysExt 868.7 ms ✓ StructArrays → StructArraysLinearAlgebraExt 836.0 ms ✓ StructArrays → StructArraysAdaptExt 1589.2 ms ✓ StructArrays → StructArraysStaticArraysExt 1031.5 ms ✓ Accessors → StructArraysExt 4078.8 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2525.0 ms ✓ HypergeometricFunctions 1323.3 ms ✓ DiffRules 12730.8 ms ✓ ChainRules 2900.3 ms ✓ StatsFuns 6702.1 ms ✓ ForwardDiff 973.6 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3317.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 4854.8 ms ✓ StatsModels 8788.2 ms ✓ Distributions 2139.7 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [9] include_string  @ ./loading.jl:3003 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 Precompilation completed after 258.89s ################################################################################ # Testing # Testing Surrogates Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed DefineSingletons ────────── v0.1.2 Installed EnzymeCore ──────────────── v0.8.17 Installed Functors ────────────────── v0.5.2 Installed MKL_jll ─────────────────── v2025.2.0+0 Installed InitialValues ───────────── v0.3.1 Installed ContextVariablesX ───────── v0.1.3 Installed NearestNeighbors ────────── v0.4.23 Installed FLoops ──────────────────── v0.2.2 Installed ArgCheck ────────────────── v2.5.0 Installed GaussQuadrature ─────────── v0.5.8 Installed Distances ───────────────── v0.10.12 Installed LIBLINEAR ───────────────── v0.7.1 Installed libsvm_jll ──────────────── v3.25.0+0 Installed LIBSVM ──────────────────── v0.8.1 Installed FLoopsBase ──────────────── v0.1.1 Installed FileIO ──────────────────── v1.17.1 Installed ScopedValues ────────────── v1.5.0 Installed LLVMOpenMP_jll ──────────── v18.1.8+0 Installed oneTBB_jll ──────────────── v2022.0.0+1 Installed AbstractTrees ───────────── v0.4.5 Installed Arpack ──────────────────── v0.5.4 Installed MLStyle ─────────────────── v0.4.17 Installed Aqua ────────────────────── v0.8.14 Installed IntelOpenMP_jll ─────────── v2025.2.0+0 Installed Flux ────────────────────── v0.16.5 Installed Optimisers ──────────────── v0.4.6 Installed CEnum ───────────────────── v0.5.0 Installed PrettyPrint ─────────────── v0.2.0 Installed CUDA_Runtime_jll ────────── v0.19.2+0 Installed SparseMatricesCSR ───────── v0.6.9 Installed Clustering ──────────────── v0.15.8 Installed SimpleTraits ────────────── v0.9.5 Installed StableRNGs ──────────────── v1.0.4 Installed AbstractGPs ─────────────── v0.5.24 Installed SplittablesBase ─────────── v0.1.15 Installed Baselet ─────────────────── v0.1.1 Installed AdaptiveRejectionSampling ─ v0.1.2 Installed Transducers ─────────────── v0.4.85 Installed Setfield ────────────────── v1.1.2 Installed PolyChaos ───────────────── v0.2.11 Installed liblinear_jll ───────────── v2.47.0+0 Installed OneHotArrays ────────────── v0.2.10 Installed MLDataDevices ───────────── v1.15.1 Installed HashArrayMappedTries ────── v0.2.0 Installed ForwardDiff ─────────────── v0.10.39 Installed Cubature ────────────────── v1.5.1 Installed NameResolution ──────────── v0.1.5 Installed Combinatorics ───────────── v1.0.3 Installed MLCore ──────────────────── v1.0.0 Installed MLUtils ─────────────────── v0.4.8 Installed GaussianMixtures ────────── v0.3.13 Installed NNlib ───────────────────── v0.9.31 Installed SciMLPublic ─────────────── v1.0.0 Installed Parsers ─────────────────── v2.8.3 Installed SafeTestsets ────────────── v0.1.0 Installed StructTypes ─────────────── v1.11.0 Installed BangBang ────────────────── v0.4.6 Installed UnsafeAtomics ───────────── v0.3.0 Installed Arpack_jll ──────────────── v3.5.1+1 Installed MicroCollections ────────── v0.2.0 Installed XGBoost_GPU_jll ─────────── v2.1.5+0 Installed JuliaVariables ──────────── v0.2.4 Installed XGBoost ─────────────────── v2.5.2 Installed JLD2 ────────────────────── v0.5.15 Installed ProgressLogging ─────────── v0.1.5 Installed TranscodingStreams ──────── v0.11.3 Installed TensorCore ──────────────── v0.1.1 Installed JSON3 ───────────────────── v1.14.3 Installed XGBoost_jll ─────────────── v2.1.5+0 Installed Cubature_jll ────────────── v1.0.5+0 Installed CUDA_Driver_jll ─────────── v13.0.2+0 Installed Atomix ──────────────────── v1.1.2 Installed FFTW ────────────────────── v1.10.0 Installed KernelAbstractions ──────── v0.9.39 Installed ScikitLearnBase ─────────── v0.5.0 Installed FFTW_jll ────────────────── v3.3.11+0 Installed KernelFunctions ─────────── v0.10.66 Installed ShowCases ───────────────── v0.1.0 Installing 8 artifacts Installed artifact LLVMOpenMP 661.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact libsvm 124.2 KiB Installed artifact liblinear 125.3 KiB Installed artifact Arpack 147.2 KiB Installed artifact Cubature 9.9 MiB Installed artifact XGBoost 3.8 MiB Installed artifact CUDA_Driver 96.1 MiB Updating `/tmp/jl_qoehKY/Project.toml` [99985d1d] + AbstractGPs v0.5.24 [4c88cf16] + Aqua v0.8.14 [667455a9] + Cubature v1.5.1 [587475ba] + Flux v0.16.5 ⌅ [f6369f11] ↓ ForwardDiff v1.3.0 ⇒ v0.10.39 [cc18c42c] + GaussianMixtures v0.3.13 [b1bec4e5] + LIBSVM v0.8.1 [3bd65402] + Optimisers v0.4.6 [8d666b04] + PolyChaos v0.2.11 [1bc83da4] + SafeTestsets v0.1.0 [860ef19b] + StableRNGs v1.0.4 [6fc51010] + Surrogates v7.0.1 [009559a3] + XGBoost v2.5.2 [44cfe95a] ~ Pkg ⇒ v1.13.0 Updating `/tmp/jl_qoehKY/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [1520ce14] + AbstractTrees v0.4.5 ⌅ [c75e803d] + AdaptiveRejectionSampling v0.1.2 [4c88cf16] + Aqua v0.8.14 [dce04be8] + ArgCheck v2.5.0 [7d9fca2a] + Arpack v0.5.4 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [fa961155] + CEnum v0.5.0 [aaaa29a8] + Clustering v0.15.8 [861a8166] + Combinatorics v1.0.3 [6add18c4] + ContextVariablesX v0.1.3 [667455a9] + Cubature v1.5.1 [244e2a9f] + DefineSingletons v0.1.2 [b4f34e82] + Distances v0.10.12 [f151be2c] + EnzymeCore v0.8.17 [7a1cc6ca] + FFTW v1.10.0 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [587475ba] + Flux v0.16.5 ⌅ [f6369f11] ↓ ForwardDiff v1.3.0 ⇒ v0.10.39 [d9f16b24] + Functors v0.5.2 [d54b0c1a] + GaussQuadrature v0.5.8 [cc18c42c] + GaussianMixtures v0.3.13 [076d061b] + HashArrayMappedTries v0.2.0 [22cec73e] + InitialValues v0.3.1 ⌅ [033835bb] + JLD2 v0.5.15 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [ec8451be] + KernelFunctions v0.10.66 [2d691ee1] + LIBLINEAR v0.7.1 [b1bec4e5] + LIBSVM v0.8.1 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.15.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [128add7d] + MicroCollections v0.2.0 [872c559c] + NNlib v0.9.31 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.23 [0b1bfda6] + OneHotArrays v0.2.10 [3bd65402] + Optimisers v0.4.6 [69de0a69] + Parsers v2.8.3 [8d666b04] + PolyChaos v0.2.11 [8162dcfd] + PrettyPrint v0.2.0 [33c8b6b6] + ProgressLogging v0.1.5 [1bc83da4] + SafeTestsets v0.1.0 [431bcebd] + SciMLPublic v1.0.0 [6e75b9c4] + ScikitLearnBase v0.5.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a0a7dd2c] + SparseMatricesCSR v0.6.9 [171d559e] + SplittablesBase v0.1.15 [860ef19b] + StableRNGs v1.0.4 [856f2bd8] + StructTypes v1.11.0 [6fc51010] + Surrogates v7.0.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.85 [013be700] + UnsafeAtomics v0.3.0 [009559a3] + XGBoost v2.5.2 ⌅ [68821587] + Arpack_jll v3.5.1+1 [4ee394cb] + CUDA_Driver_jll v13.0.2+0 [76a88914] + CUDA_Runtime_jll v0.19.2+0 [7bc98958] + Cubature_jll v1.0.5+0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [856f044c] + MKL_jll v2025.2.0+0 [bf13095a] + XGBoost_GPU_jll v2.1.5+0 [a5c6f535] + XGBoost_jll v2.1.5+0 [275f1f90] + liblinear_jll v2.47.0+0 [08558c22] + libsvm_jll v3.25.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [f43a241f] + Downloads v1.7.0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [a4e569a6] + Tar v1.10.0 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_qoehKY/Project.toml` [99985d1d] AbstractGPs v0.5.24 [4c88cf16] Aqua v0.8.14 [d360d2e6] ChainRulesCore v1.26.0 [667455a9] Cubature v1.5.1 [31c24e10] Distributions v0.25.122 [95c220a8] ExtendableSparse v1.7.1 [587475ba] Flux v0.16.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [38e38edf] GLM v1.9.0 [cc18c42c] GaussianMixtures v0.3.13 [42fd0dbc] IterativeSolvers v0.9.4 [b1bec4e5] LIBSVM v0.8.1 [3bd65402] Optimisers v0.4.6 [8d666b04] PolyChaos v0.2.11 [1fd47b50] QuadGK v2.11.2 [8a4e6c94] QuasiMonteCarlo v0.3.3 [1bc83da4] SafeTestsets v0.1.0 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [6fc51010] Surrogates v7.0.1 [89f642e6] SurrogatesBase v1.1.0 [009559a3] XGBoost v2.5.2 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.13.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_qoehKY/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 ⌅ [c75e803d] AdaptiveRejectionSampling v0.1.2 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [7d9fca2a] Arpack v0.5.4 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [667455a9] Cubature v1.5.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.17 [95c220a8] ExtendableSparse v1.7.1 [7a1cc6ca] FFTW v1.10.0 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.15.0 [587475ba] Flux v0.16.5 ⌅ [f6369f11] ForwardDiff v0.10.39 [d9f16b24] Functors v0.5.2 [38e38edf] GLM v1.9.0 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [cc18c42c] GaussianMixtures v0.3.13 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [88f59080] ILUZero v0.2.0 [7869d1d1] IRTools v0.4.15 [22cec73e] InitialValues v0.3.1 [18e54dd8] IntegerMathUtils v0.1.3 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [2d691ee1] LIBLINEAR v0.7.1 [b1bec4e5] LIBSVM v0.8.1 [73f95e8e] LatticeRules v0.0.1 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.15.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.31 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.23 [6fe1bfb0] OffsetArrays v1.17.0 [0b1bfda6] OneHotArrays v0.2.10 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [8d666b04] PolyChaos v0.2.11 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [8162dcfd] PrettyPrint v0.2.0 [27ebfcd6] Primes v0.5.7 [33c8b6b6] ProgressLogging v0.1.5 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [8a4e6c94] QuasiMonteCarlo v0.3.3 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [1bc83da4] SafeTestsets v0.1.0 [431bcebd] SciMLPublic v1.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [7e506255] ScopedValues v1.5.0 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [ed01d8cd] Sobol v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [a0a7dd2c] SparseMatricesCSR v0.6.9 [e56a9233] Sparspak v0.3.14 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [6fc51010] Surrogates v7.0.1 [89f642e6] SurrogatesBase v1.1.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [013be700] UnsafeAtomics v0.3.0 [009559a3] XGBoost v2.5.2 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 ⌅ [68821587] Arpack_jll v3.5.1+1 [4ee394cb] CUDA_Driver_jll v13.0.2+0 [76a88914] CUDA_Runtime_jll v0.19.2+0 [7bc98958] Cubature_jll v1.0.5+0 [f5851436] FFTW_jll v3.3.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [856f044c] MKL_jll v2025.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [bf13095a] XGBoost_GPU_jll v2.1.5+0 [a5c6f535] XGBoost_jll v2.1.5+0 [275f1f90] liblinear_jll v2.47.0+0 [08558c22] libsvm_jll v3.25.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [9] include_string  @ ./loading.jl:3003 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609:19  # to create a Diagonal  tr(x), function (Δ::Number) # └─────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/lib/array.jl:609  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Zygote/55SqB/src/Zygote.jl:40  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [9] include_string  @ ./loading.jl:3003 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/lib/array.jl:609 in expression starting at /home/pkgeval/.julia/packages/Zygote/55SqB/src/Zygote.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Zygote │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Zygote Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/pkgeval/.julia/compiled/v1.14/Zygote/jl_18QZQV" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Surrogates/9N0Nu/src/Radials.jl:111 in expression starting at /home/pkgeval/.julia/packages/Surrogates/9N0Nu/src/Surrogates.jl:1 in expression starting at /home/pkgeval/.julia/packages/Surrogates/9N0Nu/test/runtests.jl:1 Testing failed after 119.62s ERROR: LoadError: Package Surrogates errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 431.6s: package fails to precompile