Package evaluation to test Stheno on Julia 1.14.0-DEV.73 (4c8bca6988*) started at 2025-11-16T18:15:20.506 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.25s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 10813.4 ms ✓ KernelFunctions 4656.4 ms ✓ BlockArrays 3687.9 ms ✓ Distributions → DistributionsChainRulesCoreExt 6222.2 ms ✓ AbstractGPs 6257.8 ms ✓ Stheno 5 dependencies successfully precompiled in 33 seconds. 76 already precompiled. Precompilation completed after 45.77s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_kUzwdT/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kUzwdT/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.15.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.0 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#141` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m21.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1171s / 99.2% 32.7GiB / 99.5% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 736s 63.4% 736s 22.2GiB 68.1% 22.2GiB addition 1 394s 33.9% 394s 12.2GiB 37.6% 12.2GiB Standardised Tests (correlated sum) 1 218s 18.8% 218s 6.47GiB 19.9% 6.47GiB adj_ad 9 26.4s 2.3% 2.93s 1.11GiB 3.4% 126MiB adj_fd 9 10.2s 0.9% 1.13s 299MiB 0.9% 33.2MiB Standardised Tests (independent sum) 1 131s 11.2% 131s 5.38GiB 16.5% 5.38GiB adj_ad 9 25.2s 2.2% 2.80s 1.39GiB 4.3% 158MiB adj_fd 9 10.7s 0.9% 1.19s 306MiB 0.9% 33.9MiB Correlated GPs 1 43.0s 3.7% 43.0s 353MiB 1.1% 353MiB Consistency Tests 1 17.6s 1.5% 17.6s 143MiB 0.4% 143MiB Verify mean / kernel numerically 1 2.90s 0.2% 2.90s 46.8MiB 0.1% 46.8MiB Consistency Tests 1 1.58s 0.1% 1.58s 14.0MiB 0.0% 14.0MiB product 1 161s 13.9% 161s 4.63GiB 14.3% 4.63GiB multiply by function 1 95.0s 8.2% 95.0s 2.48GiB 7.6% 2.48GiB Diff Tests 1 54.4s 4.7% 54.4s 1.89GiB 5.8% 1.89GiB adj_ad 9 21.4s 1.8% 2.38s 0.97GiB 3.0% 111MiB adj_fd 9 6.69s 0.6% 744ms 187MiB 0.6% 20.7MiB Consistency Tests 1 6.27s 0.5% 6.27s 117MiB 0.4% 117MiB multiply by constant 1 66.3s 5.7% 66.3s 2.15GiB 6.6% 2.15GiB Diff Tests 1 50.4s 4.3% 50.4s 2.10GiB 6.4% 2.10GiB adj_ad 9 15.7s 1.4% 1.74s 920MiB 2.8% 102MiB adj_fd 9 10.6s 0.9% 1.18s 296MiB 0.9% 32.9MiB Consistency Tests 1 3.83s 0.3% 3.83s 19.9MiB 0.1% 19.9MiB GP mul errors 1 13.8ms 0.0% 13.8ms 44.9KiB 0.0% 44.9KiB compose 1 87.0s 7.5% 87.0s 2.78GiB 8.5% 2.78GiB general 1 53.0s 4.6% 53.0s 1.85GiB 5.7% 1.85GiB Diff Tests 1 47.5s 4.1% 47.5s 1.80GiB 5.5% 1.80GiB adj_ad 9 15.1s 1.3% 1.68s 847MiB 2.5% 94.1MiB adj_fd 9 6.86s 0.6% 762ms 204MiB 0.6% 22.6MiB Consistency Tests 1 4.11s 0.4% 4.11s 38.9MiB 0.1% 38.9MiB Stretch 1 27.8s 2.4% 27.8s 823MiB 2.5% 823MiB scalar stretch 1 27.0s 2.3% 27.0s 808MiB 2.4% 808MiB scalar input 1 26.2s 2.3% 26.2s 804MiB 2.4% 804MiB adj_fd 9 9.75s 0.8% 1.08s 264MiB 0.8% 29.4MiB adj_ad 9 3.49s 0.3% 388ms 165MiB 0.5% 18.3MiB vector input 1 817ms 0.1% 817ms 3.82MiB 0.0% 3.82MiB Vector stretch 1 656ms 0.1% 656ms 11.8MiB 0.0% 11.8MiB Matrix stretch 1 141ms 0.0% 141ms 3.52MiB 0.0% 3.52MiB Shift 1 3.43s 0.3% 3.43s 46.3MiB 0.1% 46.3MiB Shift{Vector{Float64}} 1 1.96s 0.2% 1.96s 16.8MiB 0.1% 16.8MiB Shift{Float64} 1 1.47s 0.1% 1.47s 29.5MiB 0.1% 29.5MiB Select 1 1.59s 0.1% 1.59s 36.5MiB 0.1% 36.5MiB evaluation 1 749ms 0.1% 749ms 23.7MiB 0.1% 23.7MiB idx isa Vector 1 518ms 0.0% 518ms 9.11MiB 0.0% 9.11MiB idx isa Integer 1 328ms 0.0% 328ms 3.67MiB 0.0% 3.67MiB Periodic 1 1.20s 0.1% 1.20s 38.2MiB 0.1% 38.2MiB cross 1 31.6s 2.7% 31.6s 1.57GiB 4.8% 1.57GiB block arrays 1 17.9s 1.5% 17.9s 913MiB 2.7% 913MiB Stheno._collect ∘ _mortar 1 15.0s 1.3% 15.0s 781MiB 2.3% 781MiB BlockMatrix 1 7.92s 0.7% 7.92s 433MiB 1.3% 433MiB adj_fd 1 1.46s 0.1% 1.46s 134MiB 0.4% 134MiB adj_ad 1 58.9ms 0.0% 58.9ms 2.64MiB 0.0% 2.64MiB BlockVector 1 7.10s 0.6% 7.10s 348MiB 1.0% 348MiB adj_fd 1 810ms 0.1% 810ms 15.2MiB 0.0% 15.2MiB adj_ad 1 239ms 0.0% 239ms 18.7MiB 0.1% 18.7MiB fdm stuff 1 2.86s 0.2% 2.86s 132MiB 0.4% 132MiB Correctness tests 1 8.31s 0.7% 8.31s 501MiB 1.5% 501MiB Standardised Tests 1 5.42s 0.5% 5.42s 199MiB 0.6% 199MiB gp 1 204s 17.6% 204s 5.49GiB 16.9% 5.49GiB adj_ad 2 21.7s 1.9% 10.8s 0.95GiB 2.9% 485MiB sparse gp 1 21.0s 1.8% 21.0s 464MiB 1.4% 464MiB SparseFiniteGP inference 1 15.3s 1.3% 15.3s 299MiB 0.9% 299MiB SparseFiniteGP methods 1 5.29s 0.5% 5.29s 159MiB 0.5% 159MiB SparseFiniteGP Constructors 1 384ms 0.0% 384ms 4.94MiB 0.0% 4.94MiB gp 1 19.7s 1.7% 19.7s 491MiB 1.5% 491MiB GP 1 19.3s 1.7% 19.3s 487MiB 1.5% 487MiB independent GPs 1 315ms 0.0% 315ms 3.01MiB 0.0% 3.01MiB wrapped AbstractGP 1 13.4ms 0.0% 13.4ms 338KiB 0.0% 338KiB adj_fd 2 5.48s 0.5% 2.74s 145MiB 0.4% 72.7MiB derived_gp 1 159μs 0.0% 159μs 2.06KiB 0.0% 2.06KiB gaussian_process_probabilistic_programme 1 143s 12.3% 143s 2.61GiB 8.0% 2.61GiB Zygote 1 29.0s 2.5% 29.0s 1.10GiB 3.4% 1.10GiB nested gppp 1 15.7s 1.4% 15.7s 86.7MiB 0.3% 86.7MiB External Consistency 1 14.4s 1.2% 14.4s 113MiB 0.3% 113MiB split 1 630ms 0.1% 630ms 13.7MiB 0.0% 13.7MiB gppp macro 1 51.9ms 0.0% 51.9ms 671KiB 0.0% 671KiB doctests 1 71.9s 6.2% 71.9s 2.00GiB 6.2% 2.00GiB BlockData 1 6.37s 0.5% 6.37s 262MiB 0.8% 262MiB vcat(::GPPPInput...) 1 1.49s 0.1% 1.49s 91.7MiB 0.3% 91.7MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1188.47s PkgEval succeeded after 1264.17s