Package evaluation to test MCPhylo on Julia 1.14.0-DEV.1260 (89243d1cdf*) started at 2025-11-17T03:58:06.687 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.14s ################################################################################ # Installation # Installing MCPhylo... Resolving package versions... Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed Libuuid_jll ────────────────────── v2.41.2+0 Installed Qt6Base_jll ────────────────────── v6.8.2+2 Installed libaom_jll ─────────────────────── v3.13.1+0 Installed HarfBuzz_jll ───────────────────── v8.5.1+0 Installed libass_jll ─────────────────────── v0.17.4+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed MultivariateStats ──────────────── v0.10.3 Installed Cairo_jll ──────────────────────── v1.18.5+0 Installed MKL_jll ────────────────────────── v2025.2.0+0 Installed Libtiff_jll ────────────────────── v4.7.2+0 Installed PlotThemes ─────────────────────── v3.3.0 Installed SIMDTypes ──────────────────────── v0.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed Functors ───────────────────────── v0.3.0 Installed NearestNeighbors ───────────────── v0.4.23 Installed Xorg_libXinerama_jll ───────────── v1.1.6+0 Installed Graphite2_jll ──────────────────── v1.3.15+0 Installed libinput_jll ───────────────────── v1.28.1+0 Installed CpuId ──────────────────────────── v0.3.1 Installed SentinelArrays ─────────────────── v1.4.8 Installed ChainRules ─────────────────────── v1.72.6 Installed MCPhyloTree ────────────────────── v1.1.7 Installed ArgCheck ───────────────────────── v2.5.0 Installed Fontconfig_jll ─────────────────── v2.17.1+0 Installed fzf_jll ────────────────────────── v0.61.1+0 Installed NaNMath ────────────────────────── v1.1.3 Installed Widgets ────────────────────────── v0.6.7 Installed Distances ──────────────────────── v0.10.12 Installed StaticArrayInterface ───────────── v1.8.0 Installed QuadGK ─────────────────────────── v2.11.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed Opus_jll ───────────────────────── v1.5.2+0 Installed Ogg_jll ────────────────────────── v1.3.6+0 Installed Xorg_libxcb_jll ────────────────── v1.17.1+0 Installed WoodburyMatrices ───────────────── v1.0.0 Installed ScopedValues ───────────────────── v1.5.0 Installed Arpack ─────────────────────────── v0.5.4 Installed Tables ─────────────────────────── v1.12.1 Installed Unzip ──────────────────────────── v0.2.0 Installed LZO_jll ────────────────────────── v2.10.3+0 Installed Xorg_xcb_util_wm_jll ───────────── v0.4.2+0 Installed Reexport ───────────────────────── v1.2.2 Installed FFMPEG ─────────────────────────── v0.4.5 Installed InverseFunctions ───────────────── v0.1.17 Installed Preferences ────────────────────── v1.5.0 Installed Static ─────────────────────────── v1.3.1 Installed MCPhylo ────────────────────────── v0.9.5 Installed LERC_jll ───────────────────────── v4.0.1+0 Installed Missings ───────────────────────── v1.2.0 Installed TableTraits ────────────────────── v1.0.1 Installed LLVMOpenMP_jll ─────────────────── v18.1.8+0 Installed Xorg_libICE_jll ────────────────── v1.1.2+0 Installed MappedArrays ───────────────────── v0.4.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed SortingAlgorithms ──────────────── v1.2.2 Installed eudev_jll ──────────────────────── v3.2.14+0 Installed EpollShim_jll ──────────────────── v0.0.20230411+1 Installed Grisu ──────────────────────────── v1.0.2 Installed Format ─────────────────────────── v1.3.7 Installed UnPack ─────────────────────────── v1.0.2 Installed Inflate ────────────────────────── v0.1.5 Installed MacroTools ─────────────────────── v0.5.16 Installed DataStructures ─────────────────── v0.18.22 Installed DiffResults ────────────────────── v1.1.0 Installed ManualMemory ───────────────────── v0.1.8 Installed URIs ───────────────────────────── v1.6.1 Installed AbstractTrees ──────────────────── v0.4.5 Installed FillArrays ─────────────────────── v1.15.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed ArnoldiMethod ──────────────────── v0.1.0 Installed VectorizationBase ──────────────── v0.21.72 Installed oneTBB_jll ─────────────────────── v2022.0.0+1 Installed Xorg_xcb_util_jll ──────────────── v0.4.1+0 Installed x264_jll ───────────────────────── v10164.0.1+0 Installed UnicodeFun ─────────────────────── v0.4.1 Installed CodecZlib ──────────────────────── v0.7.8 Installed Observables ────────────────────── v0.5.5 Installed StatsBase ──────────────────────── v0.33.21 Installed Zygote ─────────────────────────── v0.6.77 Installed Xorg_libXau_jll ────────────────── v1.0.13+0 Installed Xorg_libXfixes_jll ─────────────── v6.0.2+0 Installed HostCPUFeatures ────────────────── v0.1.17 Installed ArrayInterface ─────────────────── v7.22.0 Installed mtdev_jll ──────────────────────── v1.1.7+0 Installed Qt6ShaderTools_jll ─────────────── v6.8.2+1 Installed IntelOpenMP_jll ────────────────── v2025.2.0+0 Installed DataValueInterfaces ────────────── v1.0.0 Installed CEnum ──────────────────────────── v0.5.0 Installed LoggingExtras ──────────────────── v1.2.0 Installed CommonSubexpressions ───────────── v0.3.1 Installed Clustering ─────────────────────── v0.15.8 Installed Libffi_jll ─────────────────────── v3.4.7+0 Installed LayoutPointers ─────────────────── v0.1.17 Installed Pixman_jll ─────────────────────── v0.44.2+0 Installed libdecor_jll ───────────────────── v0.2.2+0 Installed Expat_jll ──────────────────────── v2.7.3+0 Installed RealDot ────────────────────────── v0.1.0 Installed IrrationalConstants ────────────── v0.2.6 Installed StructUtils ────────────────────── v2.6.0 Installed GPUArraysCore ──────────────────── v0.2.0 Installed Xorg_libXcursor_jll ────────────── v1.2.4+0 Installed libpng_jll ─────────────────────── v1.6.50+0 Installed ColorVectorSpace ───────────────── v0.11.0 Installed SimpleTraits ───────────────────── v0.9.5 Installed Contour ────────────────────────── v0.6.3 Installed HTTP ───────────────────────────── v1.10.19 Installed Xorg_xcb_util_keysyms_jll ──────── v0.4.1+0 Installed libfdk_aac_jll ─────────────────── v2.0.4+0 Installed StableRNGs ─────────────────────── v1.0.4 Installed BitFlags ───────────────────────── v0.1.9 Installed Roots ──────────────────────────── v2.2.10 Installed Interpolations ─────────────────── v0.16.2 Installed Scratch ────────────────────────── v1.3.0 Installed FFMPEG_jll ─────────────────────── v8.0.0+0 Installed Qt6Declarative_jll ─────────────── v6.8.2+1 Installed SimpleBufferStream ─────────────── v1.2.0 Installed PDMats ─────────────────────────── v0.11.35 Installed Setfield ───────────────────────── v1.1.2 Installed DocStringExtensions ────────────── v0.9.5 Installed TableOperations ────────────────── v1.2.0 Installed CompositionsBase ───────────────── v0.1.2 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed CommonSolve ────────────────────── v0.2.4 Installed Ghostscript_jll ────────────────── v9.55.1+0 Installed RelocatableFolders ─────────────── v1.0.1 Installed ForwardDiff ────────────────────── v0.10.39 Installed JLFzf ──────────────────────────── v0.1.11 Installed KernelDensity ──────────────────── v0.6.10 Installed SLEEFPirates ───────────────────── v0.6.43 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed ConcurrentUtilities ────────────── v2.5.0 Installed AliasTables ────────────────────── v1.1.3 Installed Plots ──────────────────────────── v1.41.1 Installed SparseInverseSubset ────────────── v0.1.2 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed RecipesBase ────────────────────── v1.3.4 Installed HashArrayMappedTries ───────────── v0.2.0 Installed Xorg_libXi_jll ─────────────────── v1.8.3+0 Installed DataAPI ────────────────────────── v1.16.0 Installed libevdev_jll ───────────────────── v1.13.4+0 Installed Wayland_jll ────────────────────── v1.24.0+0 Installed Measures ───────────────────────── v0.3.3 Installed StaticArraysCore ───────────────── v1.4.4 Installed ColorSchemes ───────────────────── v3.31.0 Installed GPUArrays ──────────────────────── v11.2.6 Installed StaticArrays ───────────────────── v1.9.15 Installed Colors ─────────────────────────── v0.13.1 Installed ReverseDiff ────────────────────── v1.16.1 Installed Xorg_libxkbfile_jll ────────────── v1.1.3+0 Installed AxisAlgorithms ─────────────────── v1.1.0 Installed SciMLPublic ────────────────────── v1.0.0 Installed Libglvnd_jll ───────────────────── v1.7.1+1 Installed AbstractFFTs ───────────────────── v1.5.0 Installed ColorTypes ─────────────────────── v0.12.1 Installed Latexify ───────────────────────── v0.16.10 Installed LLVM ───────────────────────────── v9.4.4 Installed Xorg_xkbcomp_jll ───────────────── v1.4.7+0 Installed Glib_jll ───────────────────────── v2.86.0+0 Installed FunctionWrappers ───────────────── v1.1.3 Installed Requires ───────────────────────── v1.3.1 Installed DiffRules ──────────────────────── v1.15.1 Installed LogExpFunctions ────────────────── v0.3.29 Installed Vulkan_Loader_jll ──────────────── v1.3.243+0 Installed JSON ───────────────────────────── v1.3.0 Installed Distributions ──────────────────── v0.25.122 Installed Xorg_xcb_util_cursor_jll ───────── v0.1.6+0 Installed Arpack_jll ─────────────────────── v3.5.1+1 Installed Parsers ────────────────────────── v2.8.3 Installed FiniteDiff ─────────────────────── v2.29.0 Installed Rmath ──────────────────────────── v0.9.0 Installed StatsPlots ─────────────────────── v0.15.8 Installed UnsafeAtomics ──────────────────── v0.3.0 Installed Xorg_xcb_util_renderutil_jll ───── v0.3.10+0 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed StatsFuns ──────────────────────── v1.5.2 Installed IRTools ────────────────────────── v0.4.15 Installed Xorg_libXdmcp_jll ──────────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ──────── v2.44.0+0 Installed Xorg_libSM_jll ─────────────────── v1.2.6+0 Installed XZ_jll ─────────────────────────── v5.8.1+0 Installed ZygoteRules ────────────────────── v0.2.7 Installed JLLWrappers ────────────────────── v1.7.1 Installed x265_jll ───────────────────────── v4.1.0+0 Installed Pango_jll ──────────────────────── v1.57.0+0 Installed RecipesPipeline ────────────────── v0.6.12 Installed Xorg_xtrans_jll ────────────────── v1.6.0+0 Installed GR_jll ─────────────────────────── v0.73.18+0 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Accessors ──────────────────────── v0.1.42 Installed JpegTurbo_jll ──────────────────── v3.1.3+0 Installed Dbus_jll ───────────────────────── v1.16.2+0 Installed LLVMExtra_jll ──────────────────── v0.0.38+0 Installed Bijectors ──────────────────────── v0.10.8 Installed Adapt ──────────────────────────── v4.4.0 Installed HypergeometricFunctions ────────── v0.3.28 Installed ConstructionBase ───────────────── v1.6.0 Installed LightGraphs ────────────────────── v1.3.5 Installed Libmount_jll ───────────────────── v2.41.2+0 Installed ExceptionUnwrapping ────────────── v0.1.11 Installed Xorg_libX11_jll ────────────────── v1.8.12+0 Installed Compat ─────────────────────────── v4.18.1 Installed PlotUtils ──────────────────────── v1.4.4 Installed TensorCore ─────────────────────── v0.1.1 Installed TranscodingStreams ─────────────── v0.11.3 Installed LoopVectorization ──────────────── v0.12.173 Installed Statistics ─────────────────────── v1.11.1 Installed StatsAPI ───────────────────────── v1.7.1 Installed Atomix ─────────────────────────── v1.1.2 Installed StructArrays ───────────────────── v0.7.2 Installed OffsetArrays ───────────────────── v1.17.0 Installed PrecompileTools ────────────────── v1.3.3 Installed MbedTLS ────────────────────────── v1.1.9 Installed ProgressMeter ──────────────────── v1.11.0 Installed Xorg_xcb_util_image_jll ────────── v0.4.1+0 Installed xkbcommon_jll ──────────────────── v1.9.2+0 Installed OpenSSL ────────────────────────── v1.6.0 Installed GettextRuntime_jll ─────────────── v0.22.4+0 Installed CPUSummary ─────────────────────── v0.2.7 Installed Ratios ─────────────────────────── v0.4.5 Installed ChainRulesCore ─────────────────── v1.26.0 Installed FriBidi_jll ────────────────────── v1.0.17+0 Installed Xorg_libXrender_jll ────────────── v0.9.12+0 Installed GLFW_jll ───────────────────────── v3.4.0+2 Installed LAME_jll ───────────────────────── v3.100.3+0 Installed IfElse ─────────────────────────── v0.1.1 Installed libvorbis_jll ──────────────────── v1.3.8+0 Installed KernelAbstractions ─────────────── v0.9.39 Installed PtrArrays ──────────────────────── v1.3.0 Installed FreeType2_jll ──────────────────── v2.13.4+0 Installed Showoff ────────────────────────── v1.0.3 Installed FixedPointNumbers ──────────────── v0.8.5 Installed FFTW_jll ───────────────────────── v3.3.11+0 Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed SpecialFunctions ───────────────── v2.6.1 Installed FFTW ───────────────────────────── v1.10.0 Installed MbedTLS_jll ────────────────────── v2.28.10+0 Installed Xorg_libXext_jll ───────────────── v1.3.7+0 Installed Xorg_libXrandr_jll ─────────────── v1.5.5+0 Installed Qt6Wayland_jll ─────────────────── v6.8.2+2 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ChangesOfVariables ─────────────── v0.1.10 Installed GR ─────────────────────────────── v0.73.18 Installing 80 artifacts Installed artifact Xorg_xcb_util_cursor 27.6 KiB Installed artifact Xorg_xcb_util_keysyms 17.8 KiB Installed artifact Xorg_xcb_util_wm 147.9 KiB Installed artifact libevdev 117.1 KiB Installed artifact Vulkan_Loader 177.3 KiB Installed artifact x265 1.4 MiB Installed artifact xkbcommon 263.7 KiB Installed artifact LZO 208.9 KiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact FriBidi 78.9 KiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact libdecor 44.1 KiB Installed artifact GettextRuntime 543.0 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Dbus 489.8 KiB Installed artifact Qt6Wayland 2.2 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_xcb_util_image 54.3 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Pixman 372.2 KiB Installed artifact Wayland 390.6 KiB Installed artifact Ogg 250.3 KiB Installed artifact libaom 6.4 MiB Installed artifact Arpack 147.2 KiB Installed artifact Libuuid 3.7 MiB Installed artifact GLFW 180.1 KiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Bzip2 503.5 KiB Installed artifact mtdev 79.6 KiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_xcb_util_renderutil 32.1 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact JpegTurbo 1.4 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact libass 427.8 KiB Installed artifact FFMPEG 11.7 MiB Installed artifact XZ 1.5 MiB Installed artifact Opus 925.5 KiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_libXfixes 59.0 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Rmath 121.9 KiB Installed artifact Xorg_xcb_util 39.5 KiB Installed artifact Cairo 2.2 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Qt6Base 20.6 MiB Installed artifact Ghostscript 31.4 MiB Installed artifact LLVMExtra 3.2 MiB Installed artifact FFTW 2.2 MiB Installed artifact Expat 283.3 KiB Installed artifact libinput 1.0 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact x264 2.1 MiB Installed artifact LAME 292.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Pango 2.0 MiB Installed artifact libvorbis 271.0 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Libmount 6.5 MiB Installed artifact Graphite2 120.2 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact libpng 328.4 KiB Installed artifact Libtiff 2.3 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Fontconfig 984.8 KiB Installed artifact GR 16.3 MiB Installed artifact eudev 3.9 MiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Glib 7.7 MiB Updating `~/.julia/environments/v1.14/Project.toml` [af0ac7d2] + MCPhylo v0.9.5 Updating `~/.julia/environments/v1.14/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 ⌅ [ec485272] + ArnoldiMethod v0.1.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 ⌅ [76274a88] + Bijectors v0.10.8 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [9e997f8a] + ChangesOfVariables v0.1.10 [fb6a15b2] + CloseOpenIntervals v0.1.13 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.5 [7a1cc6ca] + FFTW v1.10.0 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 ⌅ [d9f16b24] + Functors v0.3.0 [0c68f7d7] + GPUArrays v11.2.6 [46192b85] + GPUArraysCore v0.2.0 [28b8d3ca] + GR v0.73.18 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.16.2 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [1019f520] + JLFzf v0.1.11 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.3.0 [63c18a36] + KernelAbstractions v0.9.39 [5ab0869b] + KernelDensity v0.6.10 [929cbde3] + LLVM v9.4.4 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [093fc24a] + LightGraphs v1.3.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [bdcacae8] + LoopVectorization v0.12.173 [af0ac7d2] + MCPhylo v0.9.5 [e53f0ae0] + MCPhyloTree v1.1.7 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.3 [e1d29d7a] + Missings v1.2.0 [6f286f6a] + MultivariateStats v0.10.3 [77ba4419] + NaNMath v1.1.3 [b8a86587] + NearestNeighbors v0.4.23 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [4d8831e6] + OpenSSL v1.6.0 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.4 [91a5bcdd] + Plots v1.41.1 [1d0040c9] + PolyesterWeave v0.2.2 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [01d81517] + RecipesPipeline v0.6.12 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [37e2e3b7] + ReverseDiff v1.16.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [431bcebd] + SciMLPublic v1.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [992d4aef] + Showoff v1.0.3 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [f3b207a7] + StatsPlots v0.15.8 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + 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[35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [35ca27e7] + eudev_jll v3.2.14+0 [214eeab7] + fzf_jll v0.61.1+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.13.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [36db933b] + libinput_jll v1.28.1+0 [b53b4c65] + libpng_jll v1.6.50+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [009596ad] + mtdev_jll v1.1.7+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [d8fb68d0] + xkbcommon_jll v1.9.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 33.92s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4655.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/i9lgt/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4483.3 ms ✓ MacroTools 786.8 ms ✓ Reexport 982.2 ms ✓ MappedArrays 922.5 ms ✓ TensorCore 1117.7 ms ✓ ConstructionBase 1832.5 ms ✓ IrrationalConstants 1015.0 ms ✓ Measures 924.6 ms ✓ ChangesOfVariables 816.7 ms ✓ DataValueInterfaces 842.9 ms ✓ StatsAPI 2376.2 ms ✓ Format 1055.4 ms ✓ Observables 853.6 ms ✓ CEnum 1000.9 ms ✓ Functors 1020.0 ms ✓ Inflate 957.7 ms ✓ ArgCheck 926.8 ms ✓ Contour 776.7 ms ✓ CommonSolve 1289.9 ms ✓ TranscodingStreams 854.3 ms ✓ LaTeXStrings 1124.4 ms ✓ Statistics 805.5 ms ✓ StaticArraysCore 813.7 ms ✓ StableRNGs 801.6 ms ✓ IfElse 887.5 ms ✓ PtrArrays 814.0 ms ✓ SimpleBufferStream 1237.2 ms ✓ Grisu 934.8 ms ✓ ManualMemory 883.9 ms ✓ DataAPI 900.6 ms ✓ SciMLPublic 841.4 ms ✓ RealDot 837.8 ms ✓ CommonWorldInvalidations 1287.4 ms ✓ URIs 3594.3 ms ✓ UnsafeAtomics 969.7 ms ✓ InverseFunctions 889.8 ms ✓ CompositionsBase 905.8 ms ✓ BitFlags 1132.9 ms ✓ AbstractTrees 1114.6 ms ✓ AbstractFFTs 2161.0 ms ✓ FillArrays 800.4 ms ✓ UnPack 1318.7 ms ✓ OrderedCollections 1494.0 ms ✓ FunctionWrappers 911.0 ms ✓ HashArrayMappedTries 1121.1 ms ✓ DocStringExtensions ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [7] include_string  @ ./loading.jl:3003 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 Precompilation completed after 76.2s ################################################################################ # Testing # Testing MCPhylo Status `/tmp/jl_MEkjSA/Project.toml` ⌅ [76274a88] Bijectors v0.10.8 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [31c24e10] Distributions v0.25.122 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [615f187c] IfElse v0.1.1 [093fc24a] LightGraphs v1.3.5 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [af0ac7d2] MCPhylo v0.9.5 [e53f0ae0] MCPhyloTree v1.1.7 ⌃ [90014a1f] PDMats v0.11.35 [91a5bcdd] Plots v1.41.1 [92933f4c] ProgressMeter v1.11.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.16.1 [992d4aef] Showoff v1.0.3 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [f3b207a7] StatsPlots v0.15.8 ⌅ [e88e6eb3] Zygote v0.6.77 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_MEkjSA/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 ⌅ [ec485272] ArnoldiMethod v0.1.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [a9b6321e] Atomix v1.1.2 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [76274a88] Bijectors v0.10.8 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [9e997f8a] ChangesOfVariables v0.1.10 [fb6a15b2] CloseOpenIntervals v0.1.13 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [c87230d0] FFMPEG v0.4.5 [7a1cc6ca] FFTW v1.10.0 [1a297f60] FillArrays v1.15.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [7] include_string  @ ./loading.jl:3003 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [7] include_string  @ ./loading.jl:3003 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 ERROR: LoadError: ParseError: # Error @ /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144:18 function zip_missing(::Tuple{}, longer)  map(function (second_one) # └──────────┘ ── Invalid signature in function definition Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Unzip/BU542/src/Unzip.jl:144  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3147  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2993  [7] include_string  @ ./loading.jl:3003 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [9] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Unzip/BU542/src/Unzip.jl:144 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Unzip │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Unzip Failed to precompile Unzip [41fe7b60-77ed-43a1-b4f0-825fd5a5650d] to "/home/pkgeval/.julia/compiled/v1.14/Unzip/jl_S5AmNo" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Plots/8ZnR3/src/Plots.jl:1 in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/src/MCPhylo.jl:1 in expression starting at /home/pkgeval/.julia/packages/MCPhylo/KWPlY/test/runtests.jl:2 Testing failed after 299.06s ERROR: LoadError: Package MCPhylo errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 447.74s: package fails to precompile