Package evaluation to test Stheno on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-11T18:56:49.515 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.36s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.14/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.14/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.0 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.15.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.66 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.36 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 9532.1 ms ✓ KernelFunctions 3784.8 ms ✓ BlockArrays 9289.4 ms ✓ Distributions 3475.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 3641.7 ms ✓ Distributions → DistributionsTestExt 5372.3 ms ✓ AbstractGPs 6667.1 ms ✓ Stheno 7 dependencies successfully precompiled in 45 seconds. 74 already precompiled. Precompilation completed after 53.74s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_uKxG7K/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_uKxG7K/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.0 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.15.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.2.2 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.6 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.66 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/Ms56q/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#141` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 17m16.2s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1045s / 99.2% 36.3GiB / 99.4% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 662s 63.9% 662s 24.2GiB 67.1% 24.2GiB addition 1 324s 31.3% 324s 13.0GiB 36.1% 13.0GiB Standardised Tests (correlated sum) 1 184s 17.8% 184s 6.76GiB 18.7% 6.76GiB adj_ad 9 22.2s 2.1% 2.47s 1.22GiB 3.4% 139MiB adj_fd 9 8.22s 0.8% 913ms 347MiB 0.9% 38.6MiB Standardised Tests (independent sum) 1 105s 10.1% 105s 5.80GiB 16.0% 5.80GiB adj_ad 9 20.9s 2.0% 2.32s 1.54GiB 4.3% 176MiB adj_fd 9 8.37s 0.8% 930ms 363MiB 1.0% 40.3MiB Correlated GPs 1 33.1s 3.2% 33.1s 427MiB 1.2% 427MiB Consistency Tests 1 13.9s 1.3% 13.9s 172MiB 0.5% 172MiB Verify mean / kernel numerically 1 2.23s 0.2% 2.23s 54.3MiB 0.1% 54.3MiB Consistency Tests 1 1.18s 0.1% 1.18s 16.5MiB 0.0% 16.5MiB product 1 167s 16.2% 167s 5.25GiB 14.5% 5.25GiB multiply by function 1 97.5s 9.4% 97.5s 2.83GiB 7.8% 2.83GiB Diff Tests 1 55.8s 5.4% 55.8s 2.12GiB 5.9% 2.12GiB adj_ad 9 21.9s 2.1% 2.43s 1.08GiB 3.0% 123MiB adj_fd 9 7.01s 0.7% 779ms 212MiB 0.6% 23.6MiB Consistency Tests 1 6.28s 0.6% 6.28s 140MiB 0.4% 140MiB multiply by constant 1 70.0s 6.8% 70.0s 2.43GiB 6.7% 2.43GiB Diff Tests 1 53.8s 5.2% 53.8s 2.36GiB 6.5% 2.36GiB adj_ad 9 17.9s 1.7% 1.99s 1.00GiB 2.8% 114MiB adj_fd 9 11.3s 1.1% 1.25s 353MiB 1.0% 39.2MiB Consistency Tests 1 3.75s 0.4% 3.75s 23.9MiB 0.1% 23.9MiB GP mul errors 1 12.0ms 0.0% 12.0ms 47.8KiB 0.0% 47.8KiB compose 1 86.9s 8.4% 86.9s 3.10GiB 8.6% 3.10GiB general 1 52.8s 5.1% 52.8s 2.05GiB 5.7% 2.05GiB Diff Tests 1 47.2s 4.6% 47.2s 1.99GiB 5.5% 1.99GiB adj_ad 9 14.6s 1.4% 1.62s 939MiB 2.5% 104MiB adj_fd 9 6.71s 0.6% 746ms 228MiB 0.6% 25.3MiB Consistency Tests 1 4.28s 0.4% 4.28s 46.0MiB 0.1% 46.0MiB Stretch 1 28.0s 2.7% 28.0s 936MiB 2.5% 936MiB scalar stretch 1 27.2s 2.6% 27.2s 918MiB 2.5% 918MiB scalar input 1 26.4s 2.5% 26.4s 913MiB 2.5% 913MiB adj_fd 9 9.87s 1.0% 1.10s 313MiB 0.8% 34.8MiB adj_ad 9 3.56s 0.3% 396ms 184MiB 0.5% 20.4MiB vector input 1 844ms 0.1% 844ms 4.44MiB 0.0% 4.44MiB Vector stretch 1 657ms 0.1% 657ms 13.7MiB 0.0% 13.7MiB Matrix stretch 1 140ms 0.0% 140ms 3.94MiB 0.0% 3.94MiB Shift 1 3.25s 0.3% 3.25s 54.1MiB 0.1% 54.1MiB Shift{Vector{Float64}} 1 1.78s 0.2% 1.78s 19.8MiB 0.1% 19.8MiB Shift{Float64} 1 1.48s 0.1% 1.48s 34.3MiB 0.1% 34.3MiB Select 1 1.59s 0.2% 1.59s 42.1MiB 0.1% 42.1MiB evaluation 1 736ms 0.1% 736ms 27.3MiB 0.1% 27.3MiB idx isa Vector 1 521ms 0.1% 521ms 10.5MiB 0.0% 10.5MiB idx isa Integer 1 332ms 0.0% 332ms 4.30MiB 0.0% 4.30MiB Periodic 1 1.27s 0.1% 1.27s 43.5MiB 0.1% 43.5MiB cross 1 23.5s 2.3% 23.5s 1.79GiB 5.0% 1.79GiB block arrays 1 12.6s 1.2% 12.6s 1.02GiB 2.8% 1.02GiB Stheno._collect ∘ _mortar 1 10.6s 1.0% 10.6s 886MiB 2.4% 886MiB BlockMatrix 1 5.52s 0.5% 5.52s 486MiB 1.3% 486MiB adj_fd 1 708ms 0.1% 708ms 137MiB 0.4% 137MiB adj_ad 1 45.2ms 0.0% 45.2ms 2.83MiB 0.0% 2.83MiB BlockVector 1 5.12s 0.5% 5.12s 399MiB 1.1% 399MiB adj_fd 1 602ms 0.1% 602ms 18.8MiB 0.1% 18.8MiB adj_ad 1 208ms 0.0% 208ms 21.0MiB 0.1% 21.0MiB fdm stuff 1 1.99s 0.2% 1.99s 159MiB 0.4% 159MiB Correctness tests 1 6.85s 0.7% 6.85s 566MiB 1.5% 566MiB Standardised Tests 1 4.06s 0.4% 4.06s 227MiB 0.6% 227MiB gp 1 161s 15.5% 161s 6.35GiB 17.6% 6.35GiB adj_ad 2 17.4s 1.7% 8.72s 1.09GiB 3.0% 559MiB sparse gp 1 15.0s 1.5% 15.0s 537MiB 1.5% 537MiB SparseFiniteGP inference 1 10.8s 1.0% 10.8s 348MiB 0.9% 348MiB SparseFiniteGP methods 1 3.91s 0.4% 3.91s 183MiB 0.5% 183MiB SparseFiniteGP Constructors 1 296ms 0.0% 296ms 5.25MiB 0.0% 5.25MiB gp 1 14.6s 1.4% 14.6s 572MiB 1.5% 572MiB GP 1 14.3s 1.4% 14.3s 568MiB 1.5% 568MiB independent GPs 1 235ms 0.0% 235ms 3.42MiB 0.0% 3.42MiB wrapped AbstractGP 1 8.97ms 0.0% 8.97ms 373KiB 0.0% 373KiB adj_fd 2 4.27s 0.4% 2.13s 177MiB 0.5% 88.7MiB derived_gp 1 157μs 0.0% 157μs 2.06KiB 0.0% 2.06KiB gaussian_process_probabilistic_programme 1 136s 13.1% 136s 2.96GiB 8.2% 2.96GiB Zygote 1 29.9s 2.9% 29.9s 1.22GiB 3.4% 1.22GiB nested gppp 1 15.8s 1.5% 15.8s 102MiB 0.3% 102MiB External Consistency 1 14.3s 1.4% 14.3s 140MiB 0.4% 140MiB split 1 572ms 0.1% 572ms 16.2MiB 0.0% 16.2MiB gppp macro 1 52.4ms 0.0% 52.4ms 748KiB 0.0% 748KiB doctests 1 71.8s 6.9% 71.8s 2.28GiB 6.3% 2.28GiB BlockData 1 5.39s 0.5% 5.39s 303MiB 0.8% 303MiB vcat(::GPPPInput...) 1 1.28s 0.1% 1.28s 105MiB 0.3% 105MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1170.76s PkgEval succeeded after 1255.05s