Package evaluation to test PorousMaterials on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-12T00:29:17.377 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 10.34s ################################################################################ # Installation # Installing PorousMaterials... Resolving package versions... Installed CompositionsBase ──────────── v0.1.2 Installed MacroTools ────────────────── v0.5.16 Installed DiffResults ───────────────── v1.1.0 Installed FilePathsBase ─────────────── v0.9.24 Installed ForwardDiff ───────────────── v1.2.2 Installed DataStructures ────────────── v0.19.3 Installed CommonSolve ───────────────── v0.2.4 Installed Adapt ─────────────────────── v4.4.0 Installed InlineStrings ─────────────── v1.4.5 Installed JLD2 ──────────────────────── v0.4.55 Installed FillArrays ────────────────── v1.15.0 Installed ConstructionBase ──────────── v1.6.0 Installed AtomsBase ─────────────────── v0.4.2 Installed CodecZlib ─────────────────── v0.7.8 Installed AliasTables ───────────────── v1.1.3 Installed ArnoldiMethod ─────────────── v0.4.0 Installed StatsBase ─────────────────── v0.34.8 Installed PeriodicTable ─────────────── v1.2.1 Installed TranscodingStreams ────────── v0.11.3 Installed ArrayInterface ────────────── v7.22.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed OrderedCollections ────────── v1.8.1 Installed Optim ─────────────────────── v1.13.2 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed PositiveFactorizations ────── v0.2.4 Installed Statistics ────────────────── v1.11.1 Installed StatsAPI ──────────────────── v1.7.1 Installed DataValueInterfaces ───────── v1.0.0 Installed OffsetArrays ──────────────── v1.17.0 Installed PrecompileTools ───────────── v1.3.3 Installed PrecompileSignatures ──────── v3.0.3 Installed ProgressMeter ─────────────── v1.11.0 Installed FileIO ────────────────────── v1.17.1 Installed CommonSubexpressions ──────── v0.3.1 Installed SentinelArrays ────────────── v1.4.8 Installed StaticArraysCore ──────────── v1.4.4 Installed StaticArrays ──────────────── v1.9.15 Installed IrrationalConstants ───────── v0.2.6 Installed UnitfulAtomic ─────────────── v1.0.0 Installed NaNMath ───────────────────── v1.1.3 Installed StringManipulation ────────── v0.4.1 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed SimpleTraits ──────────────── v0.9.5 Installed Requires ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed Parsers ───────────────────── v2.8.3 Installed Roots ─────────────────────── v2.2.10 Installed CSV ───────────────────────── v0.10.15 Installed FiniteDiff ────────────────── v2.29.0 Installed PrettyTables ──────────────── v3.1.0 Installed Parameters ────────────────── v0.12.3 Installed Tables ────────────────────── v1.12.1 Installed PtrArrays ─────────────────── v1.3.0 Installed Unitful ───────────────────── v1.25.1 Installed EnumX ─────────────────────── v1.0.5 Installed Bio3DView ─────────────────── v1.0.0 Installed Xtals ─────────────────────── v0.5.1 Installed Reexport ──────────────────── v1.2.2 Installed DataFrames ────────────────── v1.8.1 Installed NLSolversBase ─────────────── v7.10.0 Installed InverseFunctions ──────────── v0.1.17 Installed Setfield ──────────────────── v1.1.2 Installed SpecialFunctions ──────────── v2.6.1 Installed Preferences ───────────────── v1.5.0 Installed Missings ──────────────────── v1.2.0 Installed JLLWrappers ───────────────── v1.7.1 Installed PooledArrays ──────────────── v1.4.3 Installed WeakRefStrings ────────────── v1.4.2 Installed TableTraits ───────────────── v1.0.1 Installed SortingAlgorithms ─────────── v1.2.2 Installed MetaGraphs ────────────────── v0.7.2 Installed LaTeXStrings ──────────────── v1.4.0 Installed Polynomials ───────────────── v3.2.13 Installed UnPack ────────────────────── v1.0.2 Installed WorkerUtilities ───────────── v1.6.1 Installed Crayons ───────────────────── v4.1.1 Installed LineSearches ──────────────── v7.4.0 Installed Inflate ───────────────────── v0.1.5 Installed ADTypes ───────────────────── v1.18.0 Installed Graphs ────────────────────── v1.13.1 Installed Accessors ─────────────────── v0.1.42 Installed DocStringExtensions ───────── v0.9.5 Installed DifferentiationInterface ──── v0.7.11 Installed PorousMaterials ───────────── v0.5.0 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.14/Project.toml` [68953c7c] + PorousMaterials v0.5.0 Updating `~/.julia/environments/v1.14/Manifest.toml` [47edcb42] + ADTypes v1.18.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 ⌅ [a963bdd2] + AtomsBase v0.4.2 [99c8bb3a] + Bio3DView v1.0.0 [336ed68f] + CSV v0.10.15 [944b1d66] + CodecZlib v0.7.8 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.11 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.2.2 [86223c79] + Graphs v1.13.1 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [626554b9] + MetaGraphs v0.7.2 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 ⌅ [f27b6e38] + Polynomials v3.2.13 [2dfb63ee] + PooledArrays v1.4.3 [68953c7c] + PorousMaterials v0.5.0 [85a6dd25] + PositiveFactorizations v0.2.4 [91cefc8d] + PrecompileSignatures v3.0.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [f2b01f46] + Roots v2.2.10 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.25.1 [a7773ee8] + UnitfulAtomic v1.0.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ede5f01d] + Xtals v0.5.1 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.13.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.39s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4530.6 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 4516.8 ms ✓ MacroTools 1779.7 ms ✓ InlineStrings 806.3 ms ✓ Reexport 1165.4 ms ✓ ConstructionBase 2212.3 ms ✓ IrrationalConstants 778.9 ms ✓ DataValueInterfaces 849.3 ms ✓ StatsAPI 2642.6 ms ✓ PrecompileSignatures 990.5 ms ✓ Inflate 786.7 ms ✓ CommonSolve 1290.5 ms ✓ TranscodingStreams 870.8 ms ✓ LaTeXStrings 1167.8 ms ✓ Statistics 977.3 ms ✓ StaticArraysCore 820.3 ms ✓ PtrArrays 972.1 ms ✓ PositiveFactorizations 870.7 ms ✓ DataAPI 876.1 ms ✓ InvertedIndices 964.0 ms ✓ InverseFunctions 1145.9 ms ✓ Bio3DView 846.8 ms ✓ CompositionsBase 894.4 ms ✓ EnumX 1045.1 ms ✓ WorkerUtilities 2443.2 ms ✓ FillArrays 820.9 ms ✓ UnPack 1293.5 ms ✓ OrderedCollections 1392.0 ms ✓ ADTypes 1131.1 ms ✓ DocStringExtensions 1693.9 ms ✓ OffsetArrays 754.1 ms ✓ IteratorInterfaceExtensions 2178.7 ms ✓ Crayons 1048.5 ms ✓ NaNMath 1185.9 ms ✓ Requires 35188.4 ms ✓ Unitful 3396.4 ms ✓ SentinelArrays 1951.4 ms ✓ ProgressMeter 1202.6 ms ✓ Compat 1287.8 ms ✓ Preferences 1823.0 ms ✓ CommonSubexpressions 3439.0 ms ✓ SimpleTraits 815.5 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1052.3 ms ✓ CodecZlib 1330.5 ms ✓ Statistics → SparseArraysExt 880.9 ms ✓ DiffResults 984.3 ms ✓ AliasTables 966.7 ms ✓ Missings 1018.4 ms ✓ PooledArrays 1057.0 ms ✓ InverseFunctions → InverseFunctionsDatesExt 895.1 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 1551.9 ms ✓ FillArrays → FillArraysSparseArraysExt 960.2 ms ✓ FillArrays → FillArraysStatisticsExt 963.2 ms ✓ Parameters 3744.6 ms ✓ DataStructures 770.9 ms ✓ ADTypes → ADTypesConstructionBaseExt 1918.5 ms ✓ DifferentiationInterface 1690.1 ms ✓ LogExpFunctions 826.5 ms ✓ TableTraits 936.2 ms ✓ Adapt 9142.1 ms ✓ FileIO 2003.3 ms ✓ Unitful → ConstructionBaseUnitfulExt 2141.9 ms ✓ Unitful → PrintfExt 1887.7 ms ✓ Unitful → InverseFunctionsUnitfulExt 844.2 ms ✓ Compat → CompatLinearAlgebraExt 902.8 ms ✓ PrecompileTools 1200.9 ms ✓ JLLWrappers 3192.5 ms ✓ Setfield 5300.2 ms ✓ Accessors 1063.6 ms ✓ SortingAlgorithms 1298.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 814.4 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1820.4 ms ✓ Tables 1190.1 ms ✓ ArrayInterface 1292.3 ms ✓ Adapt → AdaptSparseArraysExt 841.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 8780.2 ms ✓ UnitfulAtomic 6045.0 ms ✓ PeriodicTable 2085.1 ms ✓ FilePathsBase 3191.4 ms ✓ StringManipulation 14235.2 ms ✓ StaticArrays 2888.2 ms ✓ RecipesBase 17476.0 ms ✓ Parsers 46530.4 ms ✓ JLD2 1443.7 ms ✓ OpenSpecFun_jll 2490.1 ms ✓ Accessors → LinearAlgebraExt 2141.0 ms ✓ Accessors → UnitfulExt 4775.3 ms ✓ StatsBase 828.4 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 1439.3 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 1045.8 ms ✓ FilePathsBase → FilePathsBaseMmapExt 42131.4 ms ✓ PrettyTables 3998.3 ms ✓ ArnoldiMethod 1375.8 ms ✓ StaticArrays → StaticArraysStatisticsExt 1397.1 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1401.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1391.2 ms ✓ Adapt → AdaptStaticArraysExt 1495.3 ms ✓ Accessors → StaticArraysExt 6046.1 ms ✓ AtomsBase WARNING: Constructor for type "Symbol" was extended in `Polynomials` without explicit qualification or import.  NOTE: Assumed "Symbol" refers to `Base.Symbol`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Symbol end`.  Hint: To silence the warning, qualify `Symbol` as `Base.Symbol` in the method signature or explicitly `import Base: Symbol`. 38687.1 ms ✓ Polynomials 954.3 ms ✓ InlineStrings → ParsersExt 5268.0 ms ✓ SpecialFunctions 6530.9 ms ✓ Roots 1287.1 ms ✓ FiniteDiff 97078.2 ms ✓ DataFrames 10154.4 ms ✓ Graphs 2666.0 ms ✓ WeakRefStrings 1333.2 ms ✓ DiffRules 2215.6 ms ✓ Roots → RootsUnitfulExt 1381.7 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 1269.0 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 991.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 8833.6 ms ✓ MetaGraphs 32307.4 ms ✓ CSV 6858.2 ms ✓ ForwardDiff WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals. WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals. ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [9] include_string  @ ./loading.jl:3007 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Polynomials │ WARNING: Constructor for type "Symbol" was extended in `Polynomials` without explicit qualification or import. │ NOTE: Assumed "Symbol" refers to `Base.Symbol`. This behavior is deprecated and may differ in future versions. │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Symbol end`. │ Hint: To silence the warning, qualify `Symbol` as `Base.Symbol` in the method signature or explicitly `import Base: Symbol`. └ Precompilation completed after 585.04s ################################################################################ # Testing # Testing PorousMaterials Status `/tmp/jl_Gc5Br8/Project.toml` [4c88cf16] Aqua v0.8.14 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [e30172f5] Documenter v1.15.0 ⌅ [033835bb] JLD2 v0.4.55 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 ⌅ [f27b6e38] Polynomials v3.2.13 [68953c7c] PorousMaterials v0.5.0 [10745b16] Statistics v1.11.1 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Gc5Br8/Manifest.toml` [47edcb42] ADTypes v1.18.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 ⌅ [a963bdd2] AtomsBase v0.4.2 [99c8bb3a] Bio3DView v1.0.0 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.11 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.15.0 [4e289a0a] EnumX v1.0.5 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.2.2 [d7ba0133] Git v1.5.0 [86223c79] Graphs v1.13.1 ⌅ [b5f81e59] IOCapture v0.2.5 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.2.1 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 ⌅ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 ⌅ [f27b6e38] Polynomials v3.2.13 [2dfb63ee] PooledArrays v1.4.3 [68953c7c] PorousMaterials v0.5.0 [85a6dd25] PositiveFactorizations v0.2.4 [91cefc8d] PrecompileSignatures v3.0.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [f2b01f46] Roots v2.2.10 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [892a3eda] StringManipulation v0.4.1 [ec057cc2] StructUtils v2.6.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 [1986cc42] Unitful v1.25.1 [a7773ee8] UnitfulAtomic v1.0.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ede5f01d] Xtals v0.5.1 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.51.3+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v1.0.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals. WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals. ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [9] include_string  @ ./loading.jl:3007 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1 in expression starting at stdin:5 WARNING: Imported binding AtomsBase.boundary_conditions was undeclared at import time during import to Xtals. WARNING: Imported binding AtomsBase.species_type was undeclared at import time during import to Xtals. ERROR: LoadError: invalid method definition in Xtals: exported function AtomsBase.species_type does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/crystal.jl:1364  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/Xtals/paV65/src/Xtals.jl:22  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [9] include_string  @ ./loading.jl:3007 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/crystal.jl:1364 in expression starting at /home/pkgeval/.julia/packages/Xtals/paV65/src/Xtals.jl:1 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ Xtals │ [Output was shown above] └ ERROR: LoadError: The following 1 package failed to precompile: Xtals Failed to precompile Xtals [ede5f01d-793e-4c47-9885-c447d1f18d6d] to "/home/pkgeval/.julia/compiled/v1.14/Xtals/jl_VASxOo" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/PorousMaterials/EUXh4/src/PorousMaterials.jl:1 in expression starting at /home/pkgeval/.julia/packages/PorousMaterials/EUXh4/test/runtests.jl:14 Testing failed after 276.79s ERROR: LoadError: Package PorousMaterials errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 903.12s: package fails to precompile