Package evaluation to test PhyloClustering on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-12T06:51:12.054


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# Set-up
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Installing PkgEval dependencies (TestEnv)...

Set-up completed after 10.64s


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# Installation
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Installing PhyloClustering...
   Resolving package versions...
   Installed Libuuid_jll ───────────────── v2.41.2+0
   Installed libass_jll ────────────────── v0.17.4+0
   Installed libaom_jll ────────────────── v3.13.1+0
   Installed ImageIO ───────────────────── v0.6.9
   Installed Formatting ────────────────── v0.4.3
   Installed MosaicViews ───────────────── v0.3.4
   Installed PolygonOps ────────────────── v0.1.2
   Installed MultivariateStats ─────────── v0.10.3
   Installed MKL_jll ───────────────────── v2025.2.0+0
   Installed Bzip2_jll ─────────────────── v1.0.9+0
   Installed HarfBuzz_jll ──────────────── v8.5.1+0
   Installed Extents ───────────────────── v0.1.6
   Installed InlineStrings ─────────────── v1.4.5
   Installed Libtiff_jll ───────────────── v4.7.2+0
   Installed Cairo_jll ─────────────────── v1.18.5+0
   Installed OrderedCollections ────────── v1.8.1
   Installed Graphite2_jll ─────────────── v1.3.15+0
   Installed Functors ──────────────────── v0.4.12
   Installed UnsafeArrays ──────────────── v1.0.8
   Installed NearestNeighbors ──────────── v0.4.22
   Installed Optim ─────────────────────── v1.13.2
   Installed AbstractLattices ──────────── v0.3.1
   Installed Fontconfig_jll ────────────── v2.17.1+0
   Installed SentinelArrays ────────────── v1.4.8
   Installed Giflib_jll ────────────────── v5.2.3+0
   Installed NaNMath ───────────────────── v1.1.3
   Installed Distances ─────────────────── v0.10.12
   Installed FileIO ────────────────────── v1.17.1
   Installed QuadGK ────────────────────── v2.11.2
   Installed Graphics ──────────────────── v1.1.3
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed Opus_jll ──────────────────── v1.5.2+0
   Installed WoodburyMatrices ──────────── v1.0.0
   Installed ScopedValues ──────────────── v1.5.0
   Installed Tables ────────────────────── v1.12.1
   Installed Arpack ────────────────────── v0.5.4
   Installed Xorg_libxcb_jll ───────────── v1.17.1+0
   Installed SimplePolynomials ─────────── v0.2.18
   Installed EnumX ─────────────────────── v1.0.5
   Installed Ogg_jll ───────────────────── v1.3.6+0
   Installed LZO_jll ───────────────────── v2.10.3+0
   Installed NLSolversBase ─────────────── v7.10.0
   Installed LERC_jll ──────────────────── v4.0.1+0
   Installed Reexport ──────────────────── v1.2.2
   Installed Missings ──────────────────── v1.2.0
   Installed Preferences ───────────────── v1.5.0
   Installed TableTraits ───────────────── v1.0.1
   Installed LLVMOpenMP_jll ────────────── v18.1.8+0
   Installed Imath_jll ─────────────────── v3.1.11+0
   Installed MappedArrays ──────────────── v0.4.2
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed Crayons ───────────────────── v4.1.1
   Installed Polynomials ───────────────── v4.0.21
   Installed SortingAlgorithms ─────────── v1.2.2
   Installed RangeArrays ───────────────── v0.3.2
   Installed Grisu ─────────────────────── v1.0.2
   Installed Format ────────────────────── v1.3.7
   Installed UnPack ────────────────────── v1.0.2
   Installed ADTypes ───────────────────── v1.18.0
   Installed CRlibm ────────────────────── v1.0.2
   Installed Inflate ───────────────────── v0.1.5
   Installed ColorBrewer ───────────────── v0.4.2
   Installed MacroTools ────────────────── v0.5.16
   Installed DataStructures ────────────── v0.18.22
   Installed DiffResults ───────────────── v1.1.0
   Installed AbstractTrees ─────────────── v0.4.5
   Installed FillArrays ────────────────── v1.15.0
   Installed ParallelKMeans ────────────── v1.1.0
   Installed OpenEXR_jll ───────────────── v3.2.4+0
   Installed Packing ───────────────────── v0.5.1
   Installed LazyModules ───────────────── v0.3.1
   Installed MakieCore ─────────────────── v0.7.3
   Installed DelimitedFiles ────────────── v1.9.1
   Installed oneTBB_jll ────────────────── v2022.0.0+1
   Installed x264_jll ──────────────────── v10164.0.1+0
   Installed UnicodeFun ────────────────── v0.4.1
   Installed CodecZlib ─────────────────── v0.7.8
   Installed Cairo ─────────────────────── v1.1.1
   Installed Observables ───────────────── v0.5.5
   Installed StatsBase ─────────────────── v0.33.21
   Installed Xorg_libXau_jll ───────────── v1.0.13+0
   Installed IntelOpenMP_jll ───────────── v2025.2.0+0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed CEnum ─────────────────────── v0.5.0
   Installed ArrayInterface ────────────── v7.22.0
   Installed MathTeXEngine ─────────────── v0.5.7
   Installed CommonSubexpressions ──────── v0.3.1
   Installed Libffi_jll ────────────────── v3.4.7+0
   Installed Expat_jll ─────────────────── v2.7.3+0
   Installed Pixman_jll ────────────────── v0.44.2+0
   Installed CairoMakie ────────────────── v0.11.9
   Installed StructUtils ───────────────── v2.6.0
   Installed IrrationalConstants ───────── v0.2.6
   Installed Clustering ────────────────── v0.15.8
   Installed libpng_jll ────────────────── v1.6.50+0
   Installed IntegerMathUtils ──────────── v0.1.3
   Installed isoband_jll ───────────────── v0.2.3+0
   Installed Contour ───────────────────── v0.6.3
   Installed RoundingEmulator ──────────── v0.2.1
   Installed SimpleTraits ──────────────── v0.9.5
   Installed ImageMetadata ─────────────── v0.9.10
   Installed ColorVectorSpace ──────────── v0.10.0
   Installed StableRNGs ────────────────── v1.0.4
   Installed libfdk_aac_jll ────────────── v2.0.4+0
   Installed libsixel_jll ──────────────── v1.10.5+0
   Installed Interpolations ────────────── v0.16.2
   Installed PikaParser ────────────────── v0.6.1
   Installed libwebp_jll ───────────────── v1.6.0+0
   Installed Scratch ───────────────────── v1.3.0
   Installed FFMPEG_jll ────────────────── v8.0.0+0
   Installed Setfield ──────────────────── v1.1.2
   Installed ShaderAbstractions ────────── v0.4.1
   Installed CRlibm_jll ────────────────── v1.0.1+0
   Installed PooledArrays ──────────────── v1.4.3
   Installed FASTX ─────────────────────── v2.1.7
   Installed PDMats ────────────────────── v0.11.35
   Installed WeakKeyIdDicts ────────────── v0.1.0
   Installed ImageCore ─────────────────── v0.10.5
   Installed AxisArrays ────────────────── v0.4.8
   Installed WorkerUtilities ───────────── v1.6.1
   Installed DocStringExtensions ───────── v0.9.5
   Installed PNGFiles ──────────────────── v0.4.4
   Installed BioSequences ──────────────── v3.5.0
   Installed JpegTurbo ─────────────────── v0.1.6
   Installed ForwardDiff ───────────────── v1.2.2
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed StableHashTraits ──────────── v1.3.4
   Installed DifferentiationInterface ──── v0.7.11
   Installed FreeType ──────────────────── v4.1.1
   Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0
   Installed LightXML ──────────────────── v0.9.3
   Installed PkgVersion ────────────────── v0.3.3
   Installed RelocatableFolders ────────── v1.0.1
   Installed StackViews ────────────────── v0.1.2
   Installed ColorSchemes ──────────────── v3.31.0
   Installed Multisets ─────────────────── v0.4.5
   Installed KernelDensity ─────────────── v0.6.10
   Installed StringViews ───────────────── v1.3.5
   Installed StatsModels ───────────────── v0.7.7
   Installed AliasTables ───────────────── v1.1.3
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed HashArrayMappedTries ──────── v0.2.0
   Installed Combinatorics ─────────────── v1.0.3
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed SIMD ──────────────────────── v3.7.2
   Installed RecipesBase ───────────────── v1.3.4
   Installed DataAPI ───────────────────── v1.16.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed Netpbm ────────────────────── v1.1.1
   Installed Colors ────────────────────── v0.12.11
   Installed GaussianMixtures ──────────── v0.3.13
   Installed StaticArraysCore ──────────── v1.4.4
   Installed ImageAxes ─────────────────── v0.6.12
   Installed StaticArrays ──────────────── v1.9.15
   Installed Twiddle ───────────────────── v1.1.2
   Installed Mods ──────────────────────── v2.2.6
   Installed Libglvnd_jll ──────────────── v1.7.1+1
   Installed AbstractFFTs ──────────────── v1.5.0
   Installed QOI ───────────────────────── v1.0.1
   Installed ColorTypes ────────────────── v0.11.5
   Installed AxisAlgorithms ────────────── v1.1.0
   Installed StringManipulation ────────── v0.4.1
   Installed Requires ──────────────────── v1.3.1
   Installed Glib_jll ──────────────────── v2.86.0+0
   Installed BaseDirs ──────────────────── v1.3.2
   Installed SimplePartitions ──────────── v0.3.3
   Installed LogExpFunctions ───────────── v0.3.29
   Installed DiffRules ─────────────────── v1.15.1
   Installed FreeTypeAbstraction ───────── v0.10.8
   Installed Parsers ───────────────────── v2.8.3
   Installed JSON ──────────────────────── v1.2.1
   Installed CSV ───────────────────────── v0.10.15
   Installed Arpack_jll ────────────────── v3.5.1+1
   Installed FiniteDiff ────────────────── v2.29.0
   Installed Rmath ─────────────────────── v0.9.0
   Installed BioGenerics ───────────────── v0.1.5
   Installed PrettyTables ──────────────── v3.1.0
   Installed Distributions ─────────────── v0.25.122
   Installed PhyloNetworks ─────────────── v0.16.4
   Installed GeoFormatTypes ────────────── v0.4.5
   Installed FilePaths ─────────────────── v0.8.3
   Installed StatsFuns ─────────────────── v1.5.2
   Installed OpenEXR ───────────────────── v0.3.3
   Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0
   Installed GridLayoutBase ────────────── v0.10.2
   Installed PhyloClustering ───────────── v0.2.0
   Installed DataFrames ────────────────── v1.8.1
   Installed WeakRefStrings ────────────── v1.4.2
   Installed SignedDistanceFields ──────── v0.4.0
   Installed XZ_jll ────────────────────── v5.8.1+0
   Installed JLLWrappers ───────────────── v1.7.1
   Installed Primes ────────────────────── v0.5.7
   Installed GeometryBasics ────────────── v0.4.11
   Installed x265_jll ──────────────────── v4.1.0+0
   Installed Pango_jll ─────────────────── v1.56.4+0
   Installed ExactPredicates ───────────── v2.2.9
   Installed StructTypes ───────────────── v1.11.0
   Installed NLopt ─────────────────────── v1.2.1
   Installed StatisticalTraits ─────────── v3.5.0
   Installed Xorg_xtrans_jll ───────────── v1.6.0+0
   Installed IterTools ─────────────────── v1.10.0
   Installed FilePathsBase ─────────────── v0.9.24
   Installed TiffImages ────────────────── v0.11.6
   Installed JpegTurbo_jll ─────────────── v3.1.3+0
   Installed GLM ───────────────────────── v1.9.0
   Installed PaddedViews ───────────────── v0.5.12
   Installed Adapt ─────────────────────── v4.4.0
   Installed ConstructionBase ──────────── v1.6.0
   Installed JLD2 ──────────────────────── v0.5.15
   Installed Libmount_jll ──────────────── v2.41.2+0
   Installed TriplotBase ───────────────── v0.1.0
   Installed HypergeometricFunctions ───── v0.3.28
   Installed TranscodingStreams ────────── v0.11.3
   Installed LinearAlgebraX ────────────── v0.2.10
   Installed Compat ────────────────────── v4.18.1
   Installed Sixel ─────────────────────── v0.1.5
   Installed Xorg_libX11_jll ───────────── v1.8.12+0
   Installed RingLists ─────────────────── v0.2.9
   Installed DelaunayTriangulation ─────── v0.8.12
   Installed PlotUtils ─────────────────── v1.4.4
   Installed TensorCore ────────────────── v0.1.1
   Installed EarCut_jll ────────────────── v2.2.4+0
   Installed PositiveFactorizations ────── v0.2.4
   Installed ImageBase ─────────────────── v0.1.7
   Installed Statistics ────────────────── v1.11.1
   Installed PrecompileTools ───────────── v1.3.3
   Installed StatsAPI ──────────────────── v1.7.1
   Installed WebP ──────────────────────── v0.1.3
   Installed ProgressMeter ─────────────── v1.11.0
   Installed StructArrays ──────────────── v0.6.21
   Installed OffsetArrays ──────────────── v1.17.0
   Installed BioSymbols ────────────────── v5.2.0
   Installed Ratios ────────────────────── v0.4.5
   Installed TupleTools ────────────────── v1.6.0
   Installed GettextRuntime_jll ────────── v0.22.4+0
   Installed FriBidi_jll ───────────────── v1.0.17+0
   Installed LAME_jll ──────────────────── v3.100.3+0
   Installed ChainRulesCore ────────────── v1.26.0
   Installed Xorg_libXrender_jll ───────── v0.9.12+0
   Installed Isoband ───────────────────── v0.1.1
   Installed Parameters ────────────────── v0.12.3
   Installed Animations ────────────────── v0.4.2
   Installed libvorbis_jll ─────────────── v1.3.8+0
   Installed ScikitLearnBase ───────────── v0.5.0
   Installed IntervalArithmetic ────────── v1.0.1
   Installed PtrArrays ─────────────────── v1.3.0
   Installed XML2_jll ──────────────────── v2.15.1+0
   Installed IntervalSets ──────────────── v0.7.12
   Installed ScientificTypesBase ───────── v3.0.0
   Installed FixedPointNumbers ─────────── v0.8.5
   Installed Showoff ───────────────────── v1.0.3
   Installed SpecialFunctions ──────────── v2.6.1
   Installed FreeType2_jll ─────────────── v2.13.4+0
   Installed FFTW ──────────────────────── v1.10.0
   Installed FFTW_jll ──────────────────── v3.3.11+0
   Installed Libiconv_jll ──────────────── v1.18.0+0
   Installed Permutations ──────────────── v0.4.23
   Installed LineSearches ──────────────── v7.4.0
   Installed Automa ────────────────────── v1.1.0
   Installed Xorg_libXext_jll ──────────── v1.3.7+0
   Installed IndirectArrays ────────────── v1.0.0
   Installed NLopt_jll ─────────────────── v2.10.0+0
   Installed GeoInterface ──────────────── v1.4.1
   Installed SimpleRandom ──────────────── v0.3.2
   Installed MLJModelInterface ─────────── v1.12.0
   Installed SimpleGraphs ──────────────── v0.8.7
   Installed Makie ─────────────────────── v0.20.8
  Installing 56 artifacts
   Installed artifact Libffi                  44.2 KiB
   Installed artifact LERC                    272.9 KiB
   Installed artifact Fontconfig              984.8 KiB
   Installed artifact Ogg                     250.3 KiB
   Installed artifact GettextRuntime          543.0 KiB
   Installed artifact FreeType2               1.5 MiB
   Installed artifact x265                    1.4 MiB
   Installed artifact Libtiff                 2.3 MiB
   Installed artifact HarfBuzz                1.7 MiB
   Installed artifact FriBidi                 78.9 KiB
   Installed artifact JpegTurbo               1.4 MiB
   Installed artifact libfdk_aac              2.8 MiB
   Installed artifact XZ                      1.5 MiB
   Installed artifact CRlibm                  169.5 KiB
   Installed artifact x264                    2.1 MiB
   Installed artifact Xorg_xtrans             48.2 KiB
   Installed artifact Arpack                  147.2 KiB
   Installed artifact Rmath                   121.9 KiB
   Installed artifact libsixel                177.3 KiB
   Installed artifact Expat                   283.3 KiB
   Installed artifact libass                  427.8 KiB
   Installed artifact libaom                  6.4 MiB
   Installed artifact LLVMOpenMP              661.6 KiB
   Installed artifact Cairo                   2.2 MiB
   Installed artifact Xorg_libXrender         435.9 KiB
   Installed artifact LAME                    292.5 KiB
   Installed artifact Pixman                  372.2 KiB
   Installed artifact Bzip2                   503.5 KiB
   Installed artifact Imath                   182.8 KiB
   Installed artifact Xorg_libxcb             2.1 MiB
   Installed artifact Libglvnd                833.5 KiB
   Installed artifact FFMPEG                  11.7 MiB
   Installed artifact EarCut                  80.5 KiB
   Installed artifact isoband                 25.7 KiB
   Installed artifact OpenEXR                 1.9 MiB
   Installed artifact Graphite2               120.2 KiB
   Installed artifact libwebp                 2.6 MiB
   Installed artifact Xorg_libXdmcp           67.7 KiB
   Installed artifact LZO                     208.9 KiB
   Installed artifact libvorbis               271.0 KiB
   Installed artifact Giflib                  154.6 KiB
   Installed artifact FFTW                    2.2 MiB
   Installed artifact Opus                    925.5 KiB
   Installed artifact Xorg_libX11             13.9 MiB
   Installed artifact libpng                  328.4 KiB
   Installed artifact NLopt                   322.7 KiB
   Installed artifact XML2                    2.2 MiB
   Installed artifact Xorg_libXext            699.9 KiB
   Installed artifact OpenSpecFun             194.9 KiB
   Installed artifact Xorg_libXau             36.6 KiB
   Installed artifact Libiconv                1.9 MiB
   Installed artifact Libmount                6.5 MiB
   Installed artifact Pango                   1.1 MiB
   Installed artifact Libuuid                 3.7 MiB
   Installed artifact Glib                    7.7 MiB
   Installed artifact OpenBLASConsistentFPCSR 9.9 MiB
    Updating `~/.julia/environments/v1.14/Project.toml`
  [2e4ec7c6] + PhyloClustering v0.2.0
    Updating `~/.julia/environments/v1.14/Manifest.toml`
  [47edcb42] + ADTypes v1.18.0
  [621f4979] + AbstractFFTs v1.5.0
  [398f06c4] + AbstractLattices v0.3.1
  [1520ce14] + AbstractTrees v0.4.5
  [79e6a3ab] + Adapt v4.4.0
  [66dad0bd] + AliasTables v1.1.3
  [27a7e980] + Animations v0.4.2
  [7d9fca2a] + Arpack v0.5.4
  [4fba245c] + ArrayInterface v7.22.0
  [67c07d97] + Automa v1.1.0
  [13072b0f] + AxisAlgorithms v1.1.0
  [39de3d68] + AxisArrays v0.4.8
  [18cc8868] + BaseDirs v1.3.2
  [47718e42] + BioGenerics v0.1.5
  [7e6ae17a] + BioSequences v3.5.0
  [3c28c6f8] + BioSymbols v5.2.0
  [fa961155] + CEnum v0.5.0
  [96374032] + CRlibm v1.0.2
  [336ed68f] + CSV v0.10.15
  [159f3aea] + Cairo v1.1.1
⌅ [13f3f980] + CairoMakie v0.11.9
  [d360d2e6] + ChainRulesCore v1.26.0
  [aaaa29a8] + Clustering v0.15.8
  [944b1d66] + CodecZlib v0.7.8
  [a2cac450] + ColorBrewer v0.4.2
  [35d6a980] + ColorSchemes v3.31.0
⌅ [3da002f7] + ColorTypes v0.11.5
⌃ [c3611d14] + ColorVectorSpace v0.10.0
⌅ [5ae59095] + Colors v0.12.11
  [861a8166] + Combinatorics v1.0.3
  [bbf7d656] + CommonSubexpressions v0.3.1
  [34da2185] + Compat v4.18.1
  [187b0558] + ConstructionBase v1.6.0
  [d38c429a] + Contour v0.6.3
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.8.1
⌅ [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
⌅ [927a84f5] + DelaunayTriangulation v0.8.12
  [8bb1440f] + DelimitedFiles v1.9.1
  [163ba53b] + DiffResults v1.1.0
  [b552c78f] + DiffRules v1.15.1
  [a0c0ee7d] + DifferentiationInterface v0.7.11
  [b4f34e82] + Distances v0.10.12
  [31c24e10] + Distributions v0.25.122
  [ffbed154] + DocStringExtensions v0.9.5
  [4e289a0a] + EnumX v1.0.5
  [429591f6] + ExactPredicates v2.2.9
  [411431e0] + Extents v0.1.6
  [c2308a5c] + FASTX v2.1.7
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
⌅ [8fc22ac5] + FilePaths v0.8.3
  [48062228] + FilePathsBase v0.9.24
  [1a297f60] + FillArrays v1.15.0
  [6a86dc24] + FiniteDiff v2.29.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [1fa38f19] + Format v1.3.7
  [59287772] + Formatting v0.4.3
  [f6369f11] + ForwardDiff v1.2.2
  [b38be410] + FreeType v4.1.1
  [663a7486] + FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] + Functors v0.4.12
  [38e38edf] + GLM v1.9.0
  [cc18c42c] + GaussianMixtures v0.3.13
  [68eda718] + GeoFormatTypes v0.4.5
⌃ [cf35fbd7] + GeoInterface v1.4.1
⌅ [5c1252a2] + GeometryBasics v0.4.11
  [a2bd30eb] + Graphics v1.1.3
⌅ [3955a311] + GridLayoutBase v0.10.2
  [42e2da0e] + Grisu v1.0.2
  [076d061b] + HashArrayMappedTries v0.2.0
  [34004b35] + HypergeometricFunctions v0.3.28
  [2803e5a7] + ImageAxes v0.6.12
  [c817782e] + ImageBase v0.1.7
  [a09fc81d] + ImageCore v0.10.5
  [82e4d734] + ImageIO v0.6.9
  [bc367c6b] + ImageMetadata v0.9.10
  [9b13fd28] + IndirectArrays v1.0.0
  [d25df0c9] + Inflate v0.1.5
  [842dd82b] + InlineStrings v1.4.5
  [18e54dd8] + IntegerMathUtils v0.1.3
  [a98d9a8b] + Interpolations v0.16.2
  [d1acc4aa] + IntervalArithmetic v1.0.1
  [8197267c] + IntervalSets v0.7.12
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.6
  [f1662d9f] + Isoband v0.1.1
  [c8e1da08] + IterTools v1.10.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] + JLD2 v0.5.15
  [692b3bcd] + JLLWrappers v1.7.1
  [682c06a0] + JSON v1.2.1
  [b835a17e] + JpegTurbo v0.1.6
  [5ab0869b] + KernelDensity v0.6.10
  [b964fa9f] + LaTeXStrings v1.4.0
  [8cdb02fc] + LazyModules v0.3.1
  [9c8b4983] + LightXML v0.9.3
  [d3d80556] + LineSearches v7.4.0
  [9b3f67b0] + LinearAlgebraX v0.2.10
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [e80e1ace] + MLJModelInterface v1.12.0
  [1914dd2f] + MacroTools v0.5.16
⌅ [ee78f7c6] + Makie v0.20.8
⌅ [20f20a25] + MakieCore v0.7.3
  [dbb5928d] + MappedArrays v0.4.2
⌅ [0a4f8689] + MathTeXEngine v0.5.7
  [e1d29d7a] + Missings v1.2.0
  [7475f97c] + Mods v2.2.6
  [e94cdb99] + MosaicViews v0.3.4
  [3b2b4ff1] + Multisets v0.4.5
  [6f286f6a] + MultivariateStats v0.10.3
  [d41bc354] + NLSolversBase v7.10.0
  [76087f3c] + NLopt v1.2.1
  [77ba4419] + NaNMath v1.1.3
  [b8a86587] + NearestNeighbors v0.4.22
  [f09324ee] + Netpbm v1.1.1
  [510215fc] + Observables v0.5.5
  [6fe1bfb0] + OffsetArrays v1.17.0
  [52e1d378] + OpenEXR v0.3.3
  [429524aa] + Optim v1.13.2
  [bac558e1] + OrderedCollections v1.8.1
⌃ [90014a1f] + PDMats v0.11.35
  [f57f5aa1] + PNGFiles v0.4.4
  [19eb6ba3] + Packing v0.5.1
  [5432bcbf] + PaddedViews v0.5.12
  [42b8e9d4] + ParallelKMeans v1.1.0
  [d96e819e] + Parameters v0.12.3
  [69de0a69] + Parsers v2.8.3
  [2ae35dd2] + Permutations v0.4.23
  [2e4ec7c6] + PhyloClustering v0.2.0
⌅ [33ad39ac] + PhyloNetworks v0.16.4
  [3bbf5609] + PikaParser v0.6.1
  [eebad327] + PkgVersion v0.3.3
  [995b91a9] + PlotUtils v1.4.4
  [647866c9] + PolygonOps v0.1.2
⌃ [f27b6e38] + Polynomials v4.0.21
  [2dfb63ee] + PooledArrays v1.4.3
  [85a6dd25] + PositiveFactorizations v0.2.4
  [aea7be01] + PrecompileTools v1.3.3
  [21216c6a] + Preferences v1.5.0
  [08abe8d2] + PrettyTables v3.1.0
  [27ebfcd6] + Primes v0.5.7
  [92933f4c] + ProgressMeter v1.11.0
  [43287f4e] + PtrArrays v1.3.0
  [4b34888f] + QOI v1.0.1
  [1fd47b50] + QuadGK v2.11.2
  [b3c3ace0] + RangeArrays v0.3.2
  [c84ed2f1] + Ratios v0.4.5
  [3cdcf5f2] + RecipesBase v1.3.4
  [189a3867] + Reexport v1.2.2
  [05181044] + RelocatableFolders v1.0.1
  [ae029012] + Requires v1.3.1
  [286e9d63] + RingLists v0.2.9
  [79098fc4] + Rmath v0.9.0
  [5eaf0fd0] + RoundingEmulator v0.2.1
  [fdea26ae] + SIMD v3.7.2
  [30f210dd] + ScientificTypesBase v3.0.0
  [6e75b9c4] + ScikitLearnBase v0.5.0
  [7e506255] + ScopedValues v1.5.0
  [6c6a2e73] + Scratch v1.3.0
  [91c51154] + SentinelArrays v1.4.8
  [efcf1570] + Setfield v1.1.2
⌅ [65257c39] + ShaderAbstractions v0.4.1
  [1277b4bf] + ShiftedArrays v2.0.0
  [992d4aef] + Showoff v1.0.3
  [73760f76] + SignedDistanceFields v0.4.0
  [55797a34] + SimpleGraphs v0.8.7
  [ec83eff0] + SimplePartitions v0.3.3
  [cc47b68c] + SimplePolynomials v0.2.18
  [a6525b86] + SimpleRandom v0.3.2
  [699a6c99] + SimpleTraits v0.9.5
  [45858cf5] + Sixel v0.1.5
  [a2af1166] + SortingAlgorithms v1.2.2
  [276daf66] + SpecialFunctions v2.6.1
⌅ [c5dd0088] + StableHashTraits v1.3.4
  [860ef19b] + StableRNGs v1.0.4
  [cae243ae] + StackViews v0.1.2
  [90137ffa] + StaticArrays v1.9.15
  [1e83bf80] + StaticArraysCore v1.4.4
  [64bff920] + StatisticalTraits v3.5.0
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.1
⌅ [2913bbd2] + StatsBase v0.33.21
  [4c63d2b9] + StatsFuns v1.5.2
  [3eaba693] + StatsModels v0.7.7
  [892a3eda] + StringManipulation v0.4.1
  [354b36f9] + StringViews v1.3.5
⌅ [09ab397b] + StructArrays v0.6.21
  [856f2bd8] + StructTypes v1.11.0
  [ec057cc2] + StructUtils v2.6.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [62fd8b95] + TensorCore v0.1.1
  [731e570b] + TiffImages v0.11.6
  [3bb67fe8] + TranscodingStreams v0.11.3
  [981d1d27] + TriplotBase v0.1.0
  [9d95972d] + TupleTools v1.6.0
  [7200193e] + Twiddle v1.1.2
  [3a884ed6] + UnPack v1.0.2
  [1cfade01] + UnicodeFun v0.4.1
  [c4a57d5a] + UnsafeArrays v1.0.8
  [ecbed89c] + WeakKeyIdDicts v0.1.0
  [ea10d353] + WeakRefStrings v1.4.2
  [e3aaa7dc] + WebP v0.1.3
  [efce3f68] + WoodburyMatrices v1.0.0
  [76eceee3] + WorkerUtilities v1.6.1
⌅ [68821587] + Arpack_jll v3.5.1+1
  [6e34b625] + Bzip2_jll v1.0.9+0
  [4e9b3aee] + CRlibm_jll v1.0.1+0
  [83423d85] + Cairo_jll v1.18.5+0
  [5ae413db] + EarCut_jll v2.2.4+0
  [2e619515] + Expat_jll v2.7.3+0
  [b22a6f82] + FFMPEG_jll v8.0.0+0
  [f5851436] + FFTW_jll v3.3.11+0
  [a3f928ae] + Fontconfig_jll v2.17.1+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [59f7168a] + Giflib_jll v5.2.3+0
  [7746bdde] + Glib_jll v2.86.0+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [905a6f67] + Imath_jll v3.1.11+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [aacddb02] + JpegTurbo_jll v3.1.3+0
  [c1c5ebd0] + LAME_jll v3.100.3+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [7e76a0d4] + Libglvnd_jll v1.7.1+1
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.2+0
  [89763e89] + Libtiff_jll v4.7.2+0
  [38a345b3] + Libuuid_jll v2.41.2+0
  [856f044c] + MKL_jll v2025.2.0+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.6+0
  [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] + OpenEXR_jll v3.2.4+0
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [91d4177d] + Opus_jll v1.5.2+0
  [36c8627f] + Pango_jll v1.56.4+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [02c8fc9c] + XML2_jll v2.15.1+0
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [9a68df92] + isoband_jll v0.2.3+0
  [a4ae2306] + libaom_jll v3.13.1+0
  [0ac62f75] + libass_jll v0.17.4+0
  [f638f0a6] + libfdk_aac_jll v2.0.4+0
  [b53b4c65] + libpng_jll v1.6.50+0
  [075b6546] + libsixel_jll v1.10.5+0
  [f27f6e37] + libvorbis_jll v1.3.8+0
  [c5f90fcd] + libwebp_jll v1.6.0+0
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [1270edf5] + x264_jll v10164.0.1+0
  [dfaa095f] + x265_jll v4.1.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [8bf52ea8] + CRC32c v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v1.0.0
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.13.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v1.0.0
  [9e88b42a] + Serialization v1.11.0
  [1a1011a3] + SharedArrays v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.13.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.16.0+0
  [e37daf67] + LibGit2_jll v1.9.1+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.11.4
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.7+0
  [458c3c95] + OpenSSL_jll v3.5.4+0
  [efcefdf7] + PCRE2_jll v10.47.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.15.0+0
  [8e850ede] + nghttp2_jll v1.68.0+1
  [3f19e933] + p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`

Installation completed after 29.75s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
   4819.7 ms  ✓ TestEnv
  1 dependency successfully precompiled in 5 seconds. 27 already precompiled.

  1 dependency had output during precompilation:
┌ TestEnv
│  WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv.
└  

┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled
│   exception =
│    UndefVarError: `project_rel_path` not defined in `TestEnv`
│    Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value.
│    Stacktrace:
│     [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75
│     [2] test_dir_has_project_file
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined]
│     [3] maybe_gen_project_override!
│       @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined]
│     [4] activate(pkg::String; allow_reresolve::Bool)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12
│     [5] activate(pkg::String)
│       @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9
│     [6] top-level scope
│       @ /PkgEval.jl/scripts/precompile.jl:24
│     [7] include(mod::Module, _path::String)
│       @ Base ./Base.jl:309
│     [8] exec_options(opts::Base.JLOptions)
│       @ Base ./client.jl:344
│     [9] _start()
│       @ Base ./client.jl:577
└ @ Main /PkgEval.jl/scripts/precompile.jl:26
Precompiling package dependencies...
Precompiling packages...
   4610.6 ms  ✓ MacroTools
   1738.0 ms  ✓ InlineStrings
    789.9 ms  ✓ Reexport
    981.5 ms  ✓ MappedArrays
    936.4 ms  ✓ TensorCore
   1160.7 ms  ✓ ConstructionBase
   1139.4 ms  ✓ Mods
   2267.4 ms  ✓ IrrationalConstants
    857.5 ms  ✓ DataValueInterfaces
    901.9 ms  ✓ StatsAPI
   2492.4 ms  ✓ Format
   1111.9 ms  ✓ Observables
    844.3 ms  ✓ Twiddle
    940.4 ms  ✓ RoundingEmulator
    838.8 ms  ✓ PolygonOps
   1234.4 ms  ✓ IterTools
   1106.0 ms  ✓ IntervalSets
    889.4 ms  ✓ CEnum
   1624.1 ms  ✓ Functors
   2312.8 ms  ✓ Combinatorics
   1129.4 ms  ✓ StringViews
   1068.5 ms  ✓ RingLists
    999.9 ms  ✓ Inflate
    907.9 ms  ✓ Contour
   1032.9 ms  ✓ TupleTools
   1357.5 ms  ✓ TranscodingStreams
    894.9 ms  ✓ LaTeXStrings
   1110.5 ms  ✓ Statistics
    989.6 ms  ✓ StaticArraysCore
    949.0 ms  ✓ WeakKeyIdDicts
   1001.4 ms  ✓ StableRNGs
    785.8 ms  ✓ AbstractLattices
    955.6 ms  ✓ GeoFormatTypes
    903.8 ms  ✓ PtrArrays
   1280.7 ms  ✓ Grisu
    987.1 ms  ✓ PositiveFactorizations
    907.7 ms  ✓ DataAPI
    881.9 ms  ✓ InvertedIndices
   1158.7 ms  ✓ Multisets
   1034.1 ms  ✓ LazyModules
    932.9 ms  ✓ ShiftedArrays
   1153.0 ms  ✓ AbstractTrees
   1048.3 ms  ✓ AbstractFFTs
    918.5 ms  ✓ EnumX
   1055.3 ms  ✓ WorkerUtilities
   2490.2 ms  ✓ FillArrays
    834.0 ms  ✓ IntegerMathUtils
    905.4 ms  ✓ ScientificTypesBase
   1044.7 ms  ✓ TriplotBase
    860.9 ms  ✓ IndirectArrays
    838.0 ms  ✓ UnPack
   1036.1 ms  ✓ Extents
    869.6 ms  ✓ RangeArrays
   1278.9 ms  ✓ OrderedCollections
    935.0 ms  ✓ HashArrayMappedTries
   1474.0 ms  ✓ ADTypes
   1154.7 ms  ✓ DocStringExtensions
   1108.2 ms  ✓ UnsafeArrays
   5078.1 ms  ✓ BaseDirs
   1728.4 ms  ✓ OffsetArrays
    816.5 ms  ✓ IteratorInterfaceExtensions
   2033.7 ms  ✓ Crayons
   1049.7 ms  ✓ DelimitedFiles
┌ Warning: DEPRECATION NOTICE
│ 
│ Formatting.jl has been unmaintained for a while, with some serious
│ correctness bugs compromising the original purpose of the package. As a result,
│ it has been deprecated - consider using an alternative, such as
│ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│ 
│ If you are not using Formatting.jl as a direct dependency, please consider
│ opening an issue on any packages you are using that do use it as a dependency.
│ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│ package originally brings it in as a dependency.
└ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
   1225.9 ms  ✓ Formatting
   1048.3 ms  ✓ NaNMath
   1192.4 ms  ✓ Requires
   1287.3 ms  ✓ SuiteSparse
   1452.1 ms  ✓ WoodburyMatrices
    997.1 ms  ✓ Scratch
   3401.9 ms  ✓ SentinelArrays
   1685.5 ms  ✓ StructTypes
   1486.1 ms  ✓ StructUtils
   1995.2 ms  ✓ ProgressMeter
   3453.0 ms  ✓ UnicodeFun
   1495.5 ms  ✓ Compat
   1481.3 ms  ✓ Preferences
   4488.8 ms  ✓ PkgVersion
   1828.7 ms  ✓ CommonSubexpressions
   3700.1 ms  ✓ SimpleTraits
    835.1 ms  ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt
   3052.6 ms  ✓ MakieCore
    802.7 ms  ✓ IntervalSets → IntervalSetsRandomExt
    822.7 ms  ✓ IntervalSets → IntervalSetsPrintfExt
    771.2 ms  ✓ ConstructionBase → ConstructionBaseIntervalSetsExt
   1085.9 ms  ✓ Permutations
    983.6 ms  ✓ BioGenerics
    987.9 ms  ✓ CodecZlib
    826.6 ms  ✓ SignedDistanceFields
   1419.6 ms  ✓ Statistics → SparseArraysExt
   4247.8 ms  ✓ FixedPointNumbers
   1024.1 ms  ✓ ScikitLearnBase
   1481.7 ms  ✓ Distances
    781.0 ms  ✓ IntervalSets → IntervalSetsStatisticsExt
    883.8 ms  ✓ DiffResults
    980.2 ms  ✓ AliasTables
    910.7 ms  ✓ Showoff
   1003.2 ms  ✓ Missings
   1064.7 ms  ✓ PooledArrays
   4368.0 ms  ✓ AbstractFFTs → AbstractFFTsTestExt
   1512.6 ms  ✓ FillArrays → FillArraysSparseArraysExt
    955.1 ms  ✓ FillArrays → FillArraysStatisticsExt
   1146.7 ms  ✓ Primes
    893.1 ms  ✓ StatisticalTraits
   2072.9 ms  ✓ GeoInterface
   1002.7 ms  ✓ Parameters
    935.3 ms  ✓ ScopedValues
    780.8 ms  ✓ ADTypes → ADTypesConstructionBaseExt
   1926.5 ms  ✓ DifferentiationInterface
   1670.6 ms  ✓ LogExpFunctions
   1860.6 ms  ✓ PikaParser
    954.4 ms  ✓ PaddedViews
    865.5 ms  ✓ StackViews
    786.8 ms  ✓ TableTraits
    876.6 ms  ✓ Ratios
    976.4 ms  ✓ Adapt
   9565.4 ms  ✓ FileIO
   1816.8 ms  ✓ PDMats
   1382.0 ms  ✓ AxisAlgorithms
   1119.2 ms  ✓ RelocatableFolders
    862.2 ms  ✓ Compat → CompatLinearAlgebraExt
    939.6 ms  ✓ PrecompileTools
   1640.0 ms  ✓ JLLWrappers
   3014.3 ms  ✓ Setfield
   1592.4 ms  ✓ AxisArrays
   4746.4 ms  ✓ ColorTypes
   1406.1 ms  ✓ Distances → DistancesSparseArraysExt
   3298.9 ms  ✓ MLJModelInterface
   1358.8 ms  ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt
   1070.2 ms  ✓ MosaicViews
   1819.7 ms  ✓ Tables
   1010.5 ms  ✓ Ratios → RatiosFixedPointNumbersExt
   1183.4 ms  ✓ ArrayInterface
   1737.8 ms  ✓ Adapt → AdaptSparseArraysExt
   1178.7 ms  ✓ OffsetArrays → OffsetArraysAdaptExt
   1507.7 ms  ✓ FillArrays → FillArraysPDMatsExt
   2712.0 ms  ✓ ChainRulesCore
   2296.0 ms  ✓ FilePathsBase
   4418.7 ms  ✓ DataStructures
   2925.5 ms  ✓ BioSymbols
   3275.3 ms  ✓ StringManipulation
  18903.4 ms  ✓ SIMD
  14819.0 ms  ✓ StaticArrays
   2767.0 ms  ✓ RecipesBase
  17495.9 ms  ✓ Parsers
  52004.2 ms  ✓ JLD2
   1503.7 ms  ✓ Libffi_jll
   1466.8 ms  ✓ LZO_jll
   1415.0 ms  ✓ EarCut_jll
   1439.8 ms  ✓ Bzip2_jll
   1421.1 ms  ✓ isoband_jll
   1434.6 ms  ✓ OpenBLASConsistentFPCSR_jll
   1481.6 ms  ✓ XZ_jll
   1430.9 ms  ✓ NLopt_jll
   1410.7 ms  ✓ Rmath_jll
   1464.0 ms  ✓ OpenSpecFun_jll
   1269.4 ms  ✓ Xorg_xtrans_jll
   1440.4 ms  ✓ Opus_jll
   5572.5 ms  ✓ IntelOpenMP_jll
   1480.3 ms  ✓ x265_jll
   1471.9 ms  ✓ libpng_jll
   1460.7 ms  ✓ CRlibm_jll
   5294.2 ms  ✓ oneTBB_jll
   1438.8 ms  ✓ Imath_jll
   1453.9 ms  ✓ Arpack_jll
   1473.3 ms  ✓ Libmount_jll
   1865.0 ms  ✓ libfdk_aac_jll
   1824.0 ms  ✓ Libuuid_jll
   1881.1 ms  ✓ FriBidi_jll
   1511.2 ms  ✓ LERC_jll
   1459.2 ms  ✓ Xorg_libXau_jll
   1403.3 ms  ✓ Ogg_jll
   1651.9 ms  ✓ FFTW_jll
   1501.8 ms  ✓ LAME_jll
   1470.0 ms  ✓ Graphite2_jll
   1418.8 ms  ✓ x264_jll
   1367.0 ms  ✓ LLVMOpenMP_jll
   1414.0 ms  ✓ Libiconv_jll
   1512.1 ms  ✓ libaom_jll
   1471.3 ms  ✓ Xorg_libXdmcp_jll
   1444.4 ms  ✓ Giflib_jll
   1446.9 ms  ✓ Expat_jll
   1460.9 ms  ✓ JpegTurbo_jll
   7060.2 ms  ✓ Colors
   3985.9 ms  ✓ ColorVectorSpace
   6586.7 ms  ✓ QOI
   1594.1 ms  ✓ StructArrays
    870.9 ms  ✓ StructUtils → StructUtilsTablesExt
   7224.1 ms  ✓ StableHashTraits
    773.0 ms  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
   1299.8 ms  ✓ ArrayInterface → ArrayInterfaceSparseArraysExt
   1346.2 ms  ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt
   1008.6 ms  ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt
    893.4 ms  ✓ ADTypes → ADTypesChainRulesCoreExt
    936.1 ms  ✓ Distances → DistancesChainRulesCoreExt
    904.3 ms  ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt
   3292.2 ms  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
    845.1 ms  ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt
   2642.5 ms  ✓ FilePathsBase → FilePathsBaseTestExt
    961.6 ms  ✓ FilePathsBase → FilePathsBaseMmapExt
   1375.3 ms  ✓ FilePaths
   1626.3 ms  ✓ SortingAlgorithms
   2986.6 ms  ✓ QuadGK
   1791.9 ms  ✓ SimplePartitions
  10250.9 ms  ✓ BioSequences
  42136.5 ms  ✓ PrettyTables
  24150.0 ms  ✓ Automa
  58557.9 ms  ✓ TiffImages
   1394.9 ms  ✓ StaticArrays → StaticArraysStatisticsExt
   1489.5 ms  ✓ StaticArrays → StaticArraysChainRulesCoreExt
   1417.7 ms  ✓ ConstructionBase → ConstructionBaseStaticArraysExt
   1406.1 ms  ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt
   1367.2 ms  ✓ Adapt → AdaptStaticArraysExt
   1286.3 ms  ✓ IntervalSets → IntervalSetsRecipesBaseExt
  38835.9 ms  ✓ Polynomials
   7488.7 ms  ✓ JSON
    985.3 ms  ✓ InlineStrings → ParsersExt
   6279.2 ms  ✓ JLD2 → UnPackExt
   1569.7 ms  ✓ FreeType2_jll
    979.8 ms  ✓ Isoband
   2122.2 ms  ✓ NLopt
   1480.8 ms  ✓ Rmath
   5361.7 ms  ✓ SpecialFunctions
   1269.4 ms  ✓ CRlibm
 Downloading artifact: IntelOpenMP
 Downloading artifact: oneTBB
  13020.4 ms  ✓ MKL_jll
   1589.3 ms  ✓ OpenEXR_jll
   1444.9 ms  ✓ Arpack
   1407.3 ms  ✓ libvorbis_jll
   1384.1 ms  ✓ Pixman_jll
   1502.5 ms  ✓ XML2_jll
   1449.9 ms  ✓ GettextRuntime_jll
   1523.5 ms  ✓ Xorg_libxcb_jll
   1447.4 ms  ✓ Libtiff_jll
   1514.1 ms  ✓ libsixel_jll
   1365.8 ms  ✓ Animations
   1329.0 ms  ✓ Graphics
  32121.7 ms  ✓ ImageCore
   9049.9 ms  ✓ ColorSchemes
   1304.1 ms  ✓ StructArrays → StructArraysSparseArraysExt
    882.2 ms  ✓ StructArrays → StructArraysLinearAlgebraExt
    833.4 ms  ✓ StructArrays → StructArraysAdaptExt
   1572.1 ms  ✓ StructArrays → StructArraysStaticArraysExt
   1318.0 ms  ✓ FiniteDiff
   9507.1 ms  ✓ StatsBase
  94939.3 ms  ✓ DataFrames
  22543.3 ms  ✓ FASTX
   4597.8 ms  ✓ NearestNeighbors
   4487.4 ms  ✓ Interpolations
   4790.6 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   2604.2 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   3098.8 ms  ✓ SimplePolynomials
   3803.7 ms  ✓ ColorBrewer
   2186.1 ms  ✓ WeakRefStrings
   1387.3 ms  ✓ FreeType
   1213.2 ms  ✓ Fontconfig_jll
   3364.3 ms  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
   1970.0 ms  ✓ HypergeometricFunctions
   1285.4 ms  ✓ DiffRules
   1326.5 ms  ✓ ColorVectorSpace → SpecialFunctionsExt
   5319.5 ms  ✓ IntervalArithmetic
   7487.9 ms  ✓ FFTW
   5903.6 ms  ✓ OpenEXR
   1086.2 ms  ✓ LightXML
   1498.5 ms  ✓ Glib_jll
   1635.6 ms  ✓ Xorg_libX11_jll
   3550.6 ms  ✓ ImageBase
   6628.2 ms  ✓ PNGFiles
  10543.0 ms  ✓ Sixel
   8921.2 ms  ✓ JpegTurbo
  16707.5 ms  ✓ PlotUtils
  10897.4 ms  ✓ GeometryBasics
   1490.8 ms  ✓ FiniteDiff → FiniteDiffStaticArraysExt
   1318.2 ms  ✓ FiniteDiff → FiniteDiffSparseArraysExt
   1018.4 ms  ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt
   9723.2 ms  ✓ ParallelKMeans
   2478.5 ms  ✓ FASTX → BioSequencesExt
   9395.6 ms  ✓ Clustering
   3897.2 ms  ✓ LinearAlgebraX
  32729.1 ms  ✓ CSV
   2910.5 ms  ✓ StatsFuns
   6875.6 ms  ✓ ForwardDiff
   1583.8 ms  ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt
   1499.8 ms  ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt
   1380.3 ms  ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt
   1022.7 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
   1032.8 ms  ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt
   3597.5 ms  ✓ Polynomials → PolynomialsFFTWExt
   1500.5 ms  ✓ Xorg_libXrender_jll
   1498.9 ms  ✓ Xorg_libXext_jll
   5951.2 ms  ✓ ImageAxes
   2608.7 ms  ✓ Packing
  11341.7 ms  ✓ GridLayoutBase
   3642.8 ms  ✓ ShaderAbstractions
   5127.1 ms  ✓ FreeTypeAbstraction
   3616.9 ms  ✓ StatsFuns → StatsFunsChainRulesCoreExt
   9779.1 ms  ✓ StatsModels
  14541.9 ms  ✓ Distributions
   2209.1 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   1622.6 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   2853.4 ms  ✓ Interpolations → InterpolationsForwardDiffExt
   1408.4 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
   7605.8 ms  ✓ ExactPredicates
   1593.5 ms  ✓ Cairo_jll
   1539.5 ms  ✓ Libglvnd_jll
   4052.8 ms  ✓ ImageMetadata
  26535.7 ms  ✓ MathTeXEngine
  10016.6 ms  ✓ GLM
   4394.3 ms  ✓ Distributions → DistributionsTestExt
   3844.5 ms  ✓ SimpleRandom
   4487.8 ms  ✓ Distributions → DistributionsChainRulesCoreExt
   9300.1 ms  ✓ MultivariateStats
  13534.0 ms  ✓ GaussianMixtures
   2420.4 ms  ✓ NLSolversBase
   1672.6 ms  ✓ HarfBuzz_jll
   1783.2 ms  ✓ libwebp_jll
   8168.1 ms  ✓ Netpbm
  24663.9 ms  ✓ PhyloNetworks
   5551.2 ms  ✓ KernelDensity
   4770.8 ms  ✓ LineSearches
   1617.6 ms  ✓ libass_jll
   1636.7 ms  ✓ Pango_jll
   8735.2 ms  ✓ WebP
  11717.1 ms  ✓ Optim
   1700.3 ms  ✓ FFMPEG_jll
   2659.8 ms  ✓ Cairo
   5070.3 ms  ✓ ImageIO
   9484.1 ms  ✓ SimpleGraphs
  13468.2 ms  ✓ DelaunayTriangulation
┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
└ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
 204268.8 ms  ✓ Makie
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3151
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2997
 [27] include_string
    @ ./loading.jl:3007 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5

  3 dependencies had output during precompilation:
┌ MKL_jll
│  Downloading artifact: IntelOpenMP
│   Downloading artifact: oneTBB
└  
┌ Makie
│  ┌ Warning: `stable_hash(x; version < 4)` is not supported in Julia 1.11 or higher. Calls should not error, but *may* silently produce different hashes. `stable_hash` is intended to be used for caching, so this likely will simply reduce the number of cache hits. Upgrade to using `stable_hash(x; version=4) to avoid this warning.
│  └ @ StableHashTraits ~/.julia/packages/StableHashTraits/FV3wr/src/main_interface.jl:55
└  
┌ Formatting
│  ┌ Warning: DEPRECATION NOTICE
│  │ 
│  │ Formatting.jl has been unmaintained for a while, with some serious
│  │ correctness bugs compromising the original purpose of the package. As a result,
│  │ it has been deprecated - consider using an alternative, such as
│  │ `Format.jl` (https://github.com/JuliaString/Format.jl) or the `Printf` stdlib directly.
│  │ 
│  │ If you are not using Formatting.jl as a direct dependency, please consider
│  │ opening an issue on any packages you are using that do use it as a dependency.
│  │ From Julia 1.9 onwards, you can query `]why Formatting` to figure out which
│  │ package originally brings it in as a dependency.
│  └ @ Formatting ~/.julia/packages/Formatting/3VxOt/src/Formatting.jl:12
└  

Precompilation completed after 1605.84s


################################################################################
# Testing
#

     Testing PhyloClustering
      Status `/tmp/jl_i7x3hw/Project.toml`
⌅ [13f3f980] CairoMakie v0.11.9
  [aaaa29a8] Clustering v0.15.8
  [861a8166] Combinatorics v1.0.3
  [b4f34e82] Distances v0.10.12
  [59287772] Formatting v0.4.3
  [cc18c42c] GaussianMixtures v0.3.13
  [6f286f6a] MultivariateStats v0.10.3
  [42b8e9d4] ParallelKMeans v1.1.0
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [295af30f] Revise v3.12.1
  [860ef19b] StableRNGs v1.0.4
⌅ [2913bbd2] StatsBase v0.33.21
  [fd094767] Suppressor v0.2.8
  [9a3f8284] Random v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_i7x3hw/Manifest.toml`
  [47edcb42] ADTypes v1.18.0
  [621f4979] AbstractFFTs v1.5.0
  [398f06c4] AbstractLattices v0.3.1
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.4.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
  [7d9fca2a] Arpack v0.5.4
  [4fba245c] ArrayInterface v7.22.0
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.8
  [18cc8868] BaseDirs v1.3.2
  [47718e42] BioGenerics v0.1.5
  [7e6ae17a] BioSequences v3.5.0
  [3c28c6f8] BioSymbols v5.2.0
  [fa961155] CEnum v0.5.0
  [96374032] CRlibm v1.0.2
  [336ed68f] CSV v0.10.15
  [159f3aea] Cairo v1.1.1
⌅ [13f3f980] CairoMakie v0.11.9
  [d360d2e6] ChainRulesCore v1.26.0
  [aaaa29a8] Clustering v0.15.8
  [da1fd8a2] CodeTracking v2.0.1
  [944b1d66] CodecZlib v0.7.8
  [a2cac450] ColorBrewer v0.4.2
  [35d6a980] ColorSchemes v3.31.0
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.3
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.18.1
  [807dbc54] Compiler v0.1.1
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.8.1
⌅ [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
⌅ [927a84f5] DelaunayTriangulation v0.8.12
  [8bb1440f] DelimitedFiles v1.9.1
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.11
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.122
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.9
  [411431e0] Extents v0.1.6
  [c2308a5c] FASTX v2.1.7
  [7a1cc6ca] FFTW v1.10.0
  [5789e2e9] FileIO v1.17.1
⌅ [8fc22ac5] FilePaths v0.8.3
  [48062228] FilePathsBase v0.9.24
  [1a297f60] FillArrays v1.15.0
  [6a86dc24] FiniteDiff v2.29.0
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [59287772] Formatting v0.4.3
  [f6369f11] ForwardDiff v1.2.2
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
⌅ [d9f16b24] Functors v0.4.12
  [38e38edf] GLM v1.9.0
  [cc18c42c] GaussianMixtures v0.3.13
  [68eda718] GeoFormatTypes v0.4.5
⌃ [cf35fbd7] GeoInterface v1.4.1
⌅ [5c1252a2] GeometryBasics v0.4.11
  [a2bd30eb] Graphics v1.1.3
⌅ [3955a311] GridLayoutBase v0.10.2
  [42e2da0e] Grisu v1.0.2
  [076d061b] HashArrayMappedTries v0.2.0
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.5
  [18e54dd8] IntegerMathUtils v0.1.3
  [a98d9a8b] Interpolations v0.16.2
  [d1acc4aa] IntervalArithmetic v1.0.1
  [8197267c] IntervalSets v0.7.12
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.6
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
⌅ [033835bb] JLD2 v0.5.15
  [692b3bcd] JLLWrappers v1.7.1
  [682c06a0] JSON v1.2.1
  [b835a17e] JpegTurbo v0.1.6
  [aa1ae85d] JuliaInterpreter v0.10.6
  [5ab0869b] KernelDensity v0.6.10
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [9c8b4983] LightXML v0.9.3
  [d3d80556] LineSearches v7.4.0
  [9b3f67b0] LinearAlgebraX v0.2.10
  [2ab3a3ac] LogExpFunctions v0.3.29
  [6f1432cf] LoweredCodeUtils v3.4.4
  [e80e1ace] MLJModelInterface v1.12.0
  [1914dd2f] MacroTools v0.5.16
⌅ [ee78f7c6] Makie v0.20.8
⌅ [20f20a25] MakieCore v0.7.3
  [dbb5928d] MappedArrays v0.4.2
⌅ [0a4f8689] MathTeXEngine v0.5.7
  [e1d29d7a] Missings v1.2.0
  [7475f97c] Mods v2.2.6
  [e94cdb99] MosaicViews v0.3.4
  [3b2b4ff1] Multisets v0.4.5
  [6f286f6a] MultivariateStats v0.10.3
  [d41bc354] NLSolversBase v7.10.0
  [76087f3c] NLopt v1.2.1
  [77ba4419] NaNMath v1.1.3
  [b8a86587] NearestNeighbors v0.4.22
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.13.2
  [bac558e1] OrderedCollections v1.8.1
⌃ [90014a1f] PDMats v0.11.35
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [42b8e9d4] ParallelKMeans v1.1.0
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
  [2ae35dd2] Permutations v0.4.23
  [2e4ec7c6] PhyloClustering v0.2.0
⌅ [33ad39ac] PhyloNetworks v0.16.4
  [3bbf5609] PikaParser v0.6.1
  [eebad327] PkgVersion v0.3.3
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⌃ [f27b6e38] Polynomials v4.0.21
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [aea7be01] PrecompileTools v1.3.3
  [21216c6a] Preferences v1.5.0
  [08abe8d2] PrettyTables v3.1.0
  [27ebfcd6] Primes v0.5.7
  [92933f4c] ProgressMeter v1.11.0
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.1
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [295af30f] Revise v3.12.1
  [286e9d63] RingLists v0.2.9
  [79098fc4] Rmath v0.9.0
  [5eaf0fd0] RoundingEmulator v0.2.1
  [fdea26ae] SIMD v3.7.2
  [30f210dd] ScientificTypesBase v3.0.0
  [6e75b9c4] ScikitLearnBase v0.5.0
  [7e506255] ScopedValues v1.5.0
  [6c6a2e73] Scratch v1.3.0
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  [efcf1570] Setfield v1.1.2
⌅ [65257c39] ShaderAbstractions v0.4.1
  [1277b4bf] ShiftedArrays v2.0.0
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [55797a34] SimpleGraphs v0.8.7
  [ec83eff0] SimplePartitions v0.3.3
  [cc47b68c] SimplePolynomials v0.2.18
  [a6525b86] SimpleRandom v0.3.2
  [699a6c99] SimpleTraits v0.9.5
  [45858cf5] Sixel v0.1.5
  [a2af1166] SortingAlgorithms v1.2.2
  [276daf66] SpecialFunctions v2.6.1
⌅ [c5dd0088] StableHashTraits v1.3.4
  [860ef19b] StableRNGs v1.0.4
  [cae243ae] StackViews v0.1.2
  [90137ffa] StaticArrays v1.9.15
  [1e83bf80] StaticArraysCore v1.4.4
  [64bff920] StatisticalTraits v3.5.0
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
⌅ [2913bbd2] StatsBase v0.33.21
  [4c63d2b9] StatsFuns v1.5.2
  [3eaba693] StatsModels v0.7.7
  [892a3eda] StringManipulation v0.4.1
  [354b36f9] StringViews v1.3.5
⌅ [09ab397b] StructArrays v0.6.21
  [856f2bd8] StructTypes v1.11.0
  [ec057cc2] StructUtils v2.6.0
  [fd094767] Suppressor v0.2.8
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [62fd8b95] TensorCore v0.1.1
  [731e570b] TiffImages v0.11.6
  [3bb67fe8] TranscodingStreams v0.11.3
  [981d1d27] TriplotBase v0.1.0
  [9d95972d] TupleTools v1.6.0
  [7200193e] Twiddle v1.1.2
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [c4a57d5a] UnsafeArrays v1.0.8
  [ecbed89c] WeakKeyIdDicts v0.1.0
  [ea10d353] WeakRefStrings v1.4.2
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [76eceee3] WorkerUtilities v1.6.1
⌅ [68821587] Arpack_jll v3.5.1+1
  [6e34b625] Bzip2_jll v1.0.9+0
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.5+0
  [5ae413db] EarCut_jll v2.2.4+0
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  [559328eb] FriBidi_jll v1.0.17+0
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  [7746bdde] Glib_jll v2.86.0+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
  [aacddb02] JpegTurbo_jll v3.1.3+0
  [c1c5ebd0] LAME_jll v3.100.3+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
  [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.2+0
  [89763e89] Libtiff_jll v4.7.2+0
  [38a345b3] Libuuid_jll v2.41.2+0
  [856f044c] MKL_jll v2025.2.0+0
  [079eb43e] NLopt_jll v2.10.0+0
  [e7412a2a] Ogg_jll v1.3.6+0
  [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0
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  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.5.2+0
  [36c8627f] Pango_jll v1.56.4+0
⌅ [30392449] Pixman_jll v0.44.2+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [02c8fc9c] XML2_jll v2.15.1+0
  [ffd25f8a] XZ_jll v5.8.1+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
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  [9a68df92] isoband_jll v0.2.3+0
  [a4ae2306] libaom_jll v3.13.1+0
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  [f638f0a6] libfdk_aac_jll v2.0.4+0
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  [075b6546] libsixel_jll v1.10.5+0
  [f27f6e37] libvorbis_jll v1.3.8+0
  [c5f90fcd] libwebp_jll v1.6.0+0
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  [1270edf5] x264_jll v10164.0.1+0
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  [0dad84c5] ArgTools v1.1.2
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  [2a0f44e3] Base64 v1.11.0
  [8bf52ea8] CRC32c v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v1.0.0
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  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.13.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
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  [2f01184e] SparseArrays v1.13.0
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  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
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  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.16.0+0
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  [3f19e933] p7zip_jll v17.7.0+0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3151
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2997
 [27] include_string
    @ ./loading.jl:3007 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5
WARNING: importing deprecated binding Makie.Combined into CairoMakie.
, use Plot instead.
WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie.
, use VertexGrid instead.
WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie.
, use CellGrid instead.
ERROR: LoadError: FieldError: type Core.TypeName has no field `mt`, available fields: `name`, `module`, `singletonname`, `names`, `atomicfields`, `constfields`, `wrapper`, `Typeofwrapper`, `cache`, `linearcache`, `partial`, `hash`, `max_args`, `n_uninitialized`, `flags`, `cache_entry_count`, `max_methods`, `constprop_heuristic`
Stacktrace:
  [1] getproperty(x::Core.TypeName, f::Symbol)
    @ Base ./Base_compiler.jl:57
  [2] func2string(func::typeof(MakieCore.linesegments))
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:9
  [3] plotkey(::Type{MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:21
  [4] plotkey(::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/recipes.jl:22
  [5] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol, default::Nothing)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:255
  [6] get_attribute(dict::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}}, key::Symbol)
    @ MakieCore ~/.julia/packages/MakieCore/UAwps/src/attributes.jl:252
  [7] draw_atomic(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::Union{MakieCore.Lines, MakieCore.LineSegments})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/primitives.jl:6
  [8] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, primitive::MakieCore.LineSegments{Tuple{Vector{GeometryBasics.Point{2, Float32}}}})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:129
  [9] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene)
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51
 [10] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE})
    @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311
 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382
 [12] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{})
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466
 [13] colorbuffer
    @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined]
 [14] colorbuffer(fig::Makie.FigureAxisPlot)
    @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457
 [15] top-level scope
    @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6
 [16] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [17] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11
 [18] macro expansion
    @ ~/.julia/packages/PrecompileTools/gn08A/src/workloads.jl:73 [inlined]
 [19] macro expansion
    @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined]
 [20] include(mapexpr::Function, mod::Module, _path::String)
    @ Base ./Base.jl:310
 [21] top-level scope
    @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36
 [22] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:3151
 [24] top-level scope
    @ stdin:5
 [25] eval(m::Module, e::Any)
    @ Core ./boot.jl:489
 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)
    @ Base ./loading.jl:2997
 [27] include_string
    @ ./loading.jl:3007 [inlined]
 [28] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:342
 [29] _start()
    @ Base ./client.jl:577
in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:3
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10
in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1
in expression starting at stdin:5

  1 dependency had output during precompilation:
┌ CairoMakie
│  [Output was shown above]
└  
ERROR: LoadError: The following 1 package failed to precompile:

CairoMakie 
Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.14/CairoMakie/jl_Ho72du" (ProcessExited(1)).

in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/helper.jl:1
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3
in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1

Testing failed after 233.39s

ERROR: LoadError: Package PhyloClustering errored during testing
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68
  [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946
  [3] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined]
  [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572
  [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548
  [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172
  [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161
  [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd})
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160
  [9] test
    @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined]
 [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String)
    @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159
 [11] top-level scope
    @ /PkgEval.jl/scripts/evaluate.jl:219
 [12] include(mod::Module, _path::String)
    @ Base ./Base.jl:309
 [13] exec_options(opts::Base.JLOptions)
    @ Base ./client.jl:344
 [14] _start()
    @ Base ./client.jl:577
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210

PkgEval failed after 1924.2s: package fails to precompile