Package evaluation to test Diversity on Julia 1.14.0-DEV.65 (b05afe0f25*) started at 2025-11-11T16:42:09.520 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 15.6s ################################################################################ # Installation # Installing Diversity... Resolving package versions... Installed RecipesBase ───────────────── v1.3.4 Installed OrderedCollections ────────── v1.8.1 Installed DataAPI ───────────────────── v1.16.0 Installed InlineStrings ─────────────── v1.4.5 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.18.1 Installed EcoBase ───────────────────── v0.1.7 Installed DataStructures ────────────── v0.19.3 Installed InvertedIndices ───────────── v1.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed SentinelArrays ────────────── v1.4.8 Installed Statistics ────────────────── v1.11.1 Installed StringManipulation ────────── v0.4.1 Installed Diversity ─────────────────── v0.5.15 Installed PrecompileTools ───────────── v1.3.3 Installed Tables ────────────────────── v1.12.1 Installed Reexport ──────────────────── v1.2.2 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed Preferences ───────────────── v1.5.0 Installed TableTraits ───────────────── v1.0.1 Installed PrettyTables ──────────────── v3.1.0 Installed DataFrames ────────────────── v1.8.1 Installed Crayons ───────────────────── v4.1.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.2 Updating `~/.julia/environments/v1.14/Project.toml` [d3d5718d] + Diversity v0.5.15 Updating `~/.julia/environments/v1.14/Manifest.toml` [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [d3d5718d] + Diversity v0.5.15 [a58aae7d] + EcoBase v0.1.7 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [82899510] + IteratorInterfaceExtensions v1.0.0 [b964fa9f] + LaTeXStrings v1.4.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.0 [08abe8d2] + PrettyTables v3.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [91c51154] + SentinelArrays v1.4.8 [a2af1166] + SortingAlgorithms v1.2.2 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.13.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v1.0.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 5.85s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. 4523.8 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 27 already precompiled. 1 dependency had output during precompilation: ┌ TestEnv │ WARNING: Imported binding Operations.project_rel_path was undeclared at import time during import to TestEnv. └ ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ UndefVarError: `project_rel_path` not defined in `TestEnv` │ Suggestion: this global was defined as `Pkg.Operations.project_rel_path` but not assigned a value. │ Stacktrace: │ [1] get_test_dir(ctx::Pkg.Types.Context, pkgspec::PackageSpec) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:75 │ [2] test_dir_has_project_file │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:52 [inlined] │ [3] maybe_gen_project_override! │ @ ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/common.jl:83 [inlined] │ [4] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:12 │ [5] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/nGMfF/src/julia-1.11/activate_set.jl:9 │ [6] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [7] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [8] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:344 │ [9] _start() │ @ Base ./client.jl:577 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 813.9 ms ✓ DataValueInterfaces 1782.9 ms ✓ InlineStrings 791.7 ms ✓ Reexport 1244.6 ms ✓ OrderedCollections 863.6 ms ✓ DataAPI 1113.3 ms ✓ Statistics 917.3 ms ✓ InvertedIndices 753.1 ms ✓ IteratorInterfaceExtensions 818.3 ms ✓ LaTeXStrings 2090.9 ms ✓ Crayons 3309.8 ms ✓ SentinelArrays 1723.3 ms ✓ Preferences 1515.4 ms ✓ Compat 3940.3 ms ✓ DataStructures 983.5 ms ✓ Missings 1018.6 ms ✓ PooledArrays 747.9 ms ✓ TableTraits 937.5 ms ✓ PrecompileTools 870.9 ms ✓ Compat → CompatLinearAlgebraExt 1071.9 ms ✓ SortingAlgorithms 1775.7 ms ✓ Tables 2853.7 ms ✓ RecipesBase 3145.6 ms ✓ StringManipulation 1576.4 ms ✓ EcoBase 40803.6 ms ✓ PrettyTables 92964.8 ms ✓ DataFrames 9538.8 ms ✓ Diversity 27 dependencies successfully precompiled in 180 seconds. 12 already precompiled. Precompilation completed after 194.74s ################################################################################ # Testing # Testing Diversity Test Could not use exact versions of packages in manifest, re-resolving. Note: if you do not check your manifest file into source control, then you can probably ignore this message. However, if you do check your manifest file into source control, then you probably want to pass the `allow_reresolve = false` kwarg when calling the `Pkg.test` function. Installed OpenSSH_jll ────────────── v10.2.1+0 Installed Glob ───────────────────── v1.3.1 Installed Rmath_jll ──────────────── v0.5.1+0 Installed FilePathsBase ──────────── v0.9.24 Installed DataStructures ─────────── v0.18.22 Installed MacroTools ─────────────── v0.5.16 Installed URIs ───────────────────── v1.6.1 Installed RCall ──────────────────── v0.14.9 Installed VersionParsing ─────────── v1.3.0 Installed FillArrays ─────────────── v1.15.0 Installed HypergeometricFunctions ── v0.3.28 Installed AliasTables ────────────── v1.1.3 Installed ArnoldiMethod ──────────── v0.4.0 Installed CSTParser ──────────────── v3.4.3 Installed StatsBase ──────────────── v0.34.8 Installed StatsModels ────────────── v0.7.7 Installed ConcurrentUtilities ────── v2.5.0 Installed CodecZlib ──────────────── v0.7.8 Installed ExceptionUnwrapping ────── v0.1.11 Installed ShiftedArrays ──────────── v2.0.0 Installed Git_LFS_jll ────────────── v3.7.0+0 Installed StatsAPI ───────────────── v1.7.1 Installed StringEncodings ────────── v0.3.7 Installed TranscodingStreams ─────── v0.11.3 Installed Conda ──────────────────── v1.10.3 Installed RandomNumbers ──────────── v1.6.0 Installed MbedTLS ────────────────── v1.1.9 Installed OpenSSL ────────────────── v1.6.0 Installed LoggingExtras ──────────── v1.2.0 Installed TableTraitsUtils ───────── v1.0.2 Installed Tokenize ───────────────── v0.5.29 Installed StaticArrays ───────────── v1.9.15 Installed StaticArraysCore ───────── v1.4.4 Installed WinReg ─────────────────── v1.0.0 Installed Expat_jll ──────────────── v2.7.3+0 Installed IrrationalConstants ────── v0.2.6 Installed Distances ──────────────── v0.10.12 Installed QuadGK ─────────────────── v2.11.2 Installed ResearchSoftwareMetadata ─ v0.1.5 Installed HTTP ───────────────────── v1.10.19 Installed Chain ──────────────────── v0.5.0 Installed Requires ───────────────── v1.3.1 Installed SimpleTraits ───────────── v0.9.5 Installed DataValues ─────────────── v0.4.13 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed YAML ───────────────────── v0.4.16 Installed IterableTables ─────────── v1.0.0 Installed BitFlags ───────────────── v0.1.9 Installed DataFramesMeta ─────────── v0.14.1 Installed LogExpFunctions ────────── v0.3.29 Installed JSON ───────────────────── v0.21.4 Installed Git_jll ────────────────── v2.51.3+0 Installed Rmath ──────────────────── v0.9.0 Installed Parsers ────────────────── v2.8.3 Installed Distributions ──────────── v0.25.122 Installed CSV ────────────────────── v0.10.15 Installed AutoHashEquals ─────────── v2.2.0 Installed RandomBooleanMatrices ──── v0.1.2 Installed Unitful ────────────────── v1.25.1 Installed JuliaFormatter ─────────── v1.0.62 Installed PtrArrays ──────────────── v1.3.0 Installed StatsFuns ──────────────── v1.5.2 Installed Git ────────────────────── v1.5.0 Installed IntervalSets ───────────── v0.7.12 Installed SpecialFunctions ───────── v2.6.1 Installed SimpleBufferStream ─────── v1.2.0 Installed Libiconv_jll ───────────── v1.18.0+0 Installed WeakRefStrings ─────────── v1.4.2 Installed JLLWrappers ────────────── v1.7.1 Installed ParserCombinator ───────── v2.2.1 Installed SpatialEcology ─────────── v0.9.16 Installed Phylo ──────────────────── v0.5.4 Installed MbedTLS_jll ────────────── v2.28.10+0 Installed CommonMark ─────────────── v0.8.16 Installed PDMats ─────────────────── v0.11.36 Installed AxisArrays ─────────────── v0.4.8 Installed IterTools ──────────────── v1.10.0 Installed CategoricalArrays ──────── v1.0.2 Installed RangeArrays ────────────── v0.3.2 Installed WorkerUtilities ────────── v1.6.1 Installed Inflate ────────────────── v0.1.5 Installed DocStringExtensions ────── v0.9.5 Installed Graphs ─────────────────── v1.13.1 Installing 8 artifacts Installed artifact Rmath 121.9 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 283.3 KiB Installed artifact MbedTLS 2.2 MiB Installed artifact Libiconv 1.9 MiB Installed artifact OpenSSH 4.3 MiB Installed artifact Git_LFS 9.6 MiB Installed artifact Git 48.9 MiB Updating `/tmp/jl_v6fzvh/Project.toml` [39de3d68] + AxisArrays v0.4.8 [336ed68f] + CSV v0.10.15 [b4f34e82] + Distances v0.10.12 [d3d5718d] + Diversity v0.5.15 [d7ba0133] + Git v1.5.0 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [aea672f4] + Phylo v0.5.4 [6f49c342] + RCall v0.14.9 [58378933] + ResearchSoftwareMetadata v0.1.5 [348f2d5d] + SpatialEcology v0.9.16 [2913bbd2] + StatsBase v0.34.8 [56ddb016] ~ Logging ⇒ v1.11.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_v6fzvh/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [15f4f7f2] + AutoHashEquals v2.2.0 [39de3d68] + AxisArrays v0.4.8 [d1d4a3ce] + BitFlags v0.1.9 [00ebfdb7] + CSTParser v3.4.3 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v1.0.2 ⌅ [8be319e6] + Chain v0.5.0 [944b1d66] + CodecZlib v0.7.8 ⌅ [a80b9123] + CommonMark v0.8.16 [f0e56b4a] + ConcurrentUtilities v2.5.0 [8f4d0f93] + Conda v1.10.3 ⌅ [1313f7d8] + DataFramesMeta v0.14.1 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 [e7dc6d0d] + DataValues v0.4.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.122 [d3d5718d] + Diversity v0.5.15 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.15.0 [d7ba0133] + Git v1.5.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.1 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.12 [92d709cd] + IrrationalConstants v0.2.6 [c8e1da08] + IterTools v1.10.0 [1c8ee90f] + IterableTables v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [4d8831e6] + OpenSSL v1.6.0 [90014a1f] + PDMats v0.11.36 [fae87a5f] + ParserCombinator v2.2.1 [69de0a69] + Parsers v2.8.3 [aea672f4] + Phylo v0.5.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [6f49c342] + RCall v0.14.9 [9ae346a0] + RandomBooleanMatrices v0.1.2 [e6cf234a] + RandomNumbers v1.6.0 [b3c3ace0] + RangeArrays v0.3.2 [ae029012] + Requires v1.3.1 [58378933] + ResearchSoftwareMetadata v0.1.5 [79098fc4] + Rmath v0.9.0 [1277b4bf] + ShiftedArrays v2.0.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.5 [348f2d5d] + SpatialEcology v0.9.16 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.15 [1e83bf80] + StaticArraysCore v1.4.4 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.8 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.7 [69024149] + StringEncodings v0.3.7 [382cd787] + TableTraitsUtils v1.0.2 [0796e94c] + Tokenize v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.25.1 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 [1b915085] + WinReg v1.0.0 [76eceee3] + WorkerUtilities v1.6.1 [ddb6d928] + YAML v0.4.16 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.51.3+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.10+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [b27032c2] + LibCURL v1.0.0 [76f85450] + LibGit2 v1.11.0 [56ddb016] ~ Logging ⇒ v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] ~ Pkg ⇒ v1.13.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [2f01184e] + SparseArrays v1.13.0 [4607b0f0] + SuiteSparse [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [deac9b47] + LibCURL_jll v8.16.0+0 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.47.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850ede] + nghttp2_jll v1.68.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building RCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/7521292e0ca900751cf0f35f2a2faf1cb321e960/build.log` Test Successfully re-resolved Status `/tmp/jl_v6fzvh/Project.toml` [39de3d68] AxisArrays v0.4.8 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [b4f34e82] Distances v0.10.12 [d3d5718d] Diversity v0.5.15 [a58aae7d] EcoBase v0.1.7 [d7ba0133] Git v1.5.0 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [e1d29d7a] Missings v1.2.0 [aea672f4] Phylo v0.5.4 [6f49c342] RCall v0.14.9 [3cdcf5f2] RecipesBase v1.3.4 [58378933] ResearchSoftwareMetadata v0.1.5 [348f2d5d] SpatialEcology v0.9.16 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.8 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.13.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_v6fzvh/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [15f4f7f2] AutoHashEquals v2.2.0 [39de3d68] AxisArrays v0.4.8 [d1d4a3ce] BitFlags v0.1.9 [00ebfdb7] CSTParser v3.4.3 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 ⌅ [8be319e6] Chain v0.5.0 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [1313f7d8] DataFramesMeta v0.14.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [e7dc6d0d] DataValues v0.4.13 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.122 [d3d5718d] Diversity v0.5.15 [ffbed154] DocStringExtensions v0.9.5 [a58aae7d] EcoBase v0.1.7 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.15.0 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.3.1 [86223c79] Graphs v1.13.1 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.5 [8197267c] IntervalSets v0.7.12 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [c8e1da08] IterTools v1.10.0 [1c8ee90f] IterableTables v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.36 [fae87a5f] ParserCombinator v2.2.1 [69de0a69] Parsers v2.8.3 [aea672f4] Phylo v0.5.4 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.0 [08abe8d2] PrettyTables v3.1.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [6f49c342] RCall v0.14.9 [9ae346a0] RandomBooleanMatrices v0.1.2 [e6cf234a] RandomNumbers v1.6.0 [b3c3ace0] RangeArrays v0.3.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [58378933] ResearchSoftwareMetadata v0.1.5 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [348f2d5d] SpatialEcology v0.9.16 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.15 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.8 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.7 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [382cd787] TableTraitsUtils v1.0.2 [bd369af6] Tables v1.12.1 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.25.1 [81def892] 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[9a3f8284] Random v1.11.0 [ea8e919c] SHA v1.0.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.13.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.16.0+0 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.47.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.68.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... [ Info: Running tests for files: = API.jl = Diversity.jl = DiversityMeasure.jl = EcoBase.jl = Ecology.jl = EffectiveNumbers.jl = GeneralisedDiversities.jl = Hill.jl = Interface.jl = Iterators.jl = Jost.jl = Metacommunity.jl = Partition.jl = Types.jl [ Info: Running tests... * Testing API.jl ... * Testing Diversity.jl ... * Testing DiversityMeasure.jl ... * Testing EcoBase.jl ... WARNING: Imported binding DataFrames.aggregate was undeclared at import time during import to SpatialEcology. ERROR: LoadError: invalid method definition in SpatialEcology: exported function DataFrames.aggregate does not exist Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4  [2] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [3] top-level scope  @ ~/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:53  [4] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [5] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3151  [6] top-level scope  @ stdin:5  [7] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [8] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2997  [9] include_string  @ ./loading.jl:3007 [inlined]  [10] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:342  [11] _start()  @ Base ./client.jl:577 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/Operations.jl:4 in expression starting at /home/pkgeval/.julia/packages/SpatialEcology/2IBpN/src/SpatialEcology.jl:2 in expression starting at stdin:5 1 dependency had output during precompilation: ┌ SpatialEcology │ [Output was shown above] └ t = EcoBase: Error During Test at /home/pkgeval/.julia/packages/Diversity/trAoz/test/runtests.jl:94 Got exception outside of a @test LoadError: The following 1 package failed to precompile: SpatialEcology Failed to precompile SpatialEcology [348f2d5d-71a3-5ad4-b565-8af070f99681] to "/home/pkgeval/.julia/compiled/v1.14/SpatialEcology/jl_j3Gtf4" (ProcessExited(1)). in expression starting at /home/pkgeval/.julia/packages/Diversity/trAoz/test/test_EcoBase.jl:3 * Testing Ecology.jl ... * Testing EffectiveNumbers.jl ... * Testing GeneralisedDiversities.jl ... * Testing Hill.jl ... ┌ Warning: Abundances not normalised to 1, correcting... └ @ Diversity ~/.julia/packages/Diversity/trAoz/src/Metacommunity.jl:124 * Testing Interface.jl ... * Testing Iterators.jl ... * Testing Jost.jl ... * Testing Metacommunity.jl ... ┌ Warning: Abundances not normalised to 1, correcting... └ @ Diversity ~/.julia/packages/Diversity/trAoz/src/Metacommunity.jl:74 * Testing Partition.jl ... * Testing Types.jl ... [ Info: Running tests for extensions: = DiversityAxisArraysExt.jl = DiversityPhyloExt.jl [ Info: Running extension tests... * Testing DiversityAxisArraysExt.jl extension... * Testing DiversityPhyloExt.jl extension... Test Summary: | Pass Error Broken Total Time Diversity.jl | 258 1 2 261 8m13.9s t = API | 2 2 0.8s t = Diversity | 0 0.0s t = DiversityMeasure | 67 67 1m05.7s t = EcoBase | 1 1 1m03.3s t = Ecology | 42 2 44 26.4s t = EffectiveNumbers | 41 41 7.7s t = GeneralisedDiversities | 16 16 2.7s t = Hill | 9 9 5.2s t = Interface | 1 1 0.7s t = Iterators | 16 16 4m03.4s t = Jost | 9 9 45.9s t = Metacommunity | 16 16 7.7s t = Partition | 5 5 0.2s t = Types | 16 16 6.1s t = DiversityAxisArraysExt | 3 3 2.0s t = DiversityPhyloExt | 14 14 7.9s RNG of the outermost testset: Xoshiro(0x9951797c85a704f1, 0xb9d66be14dfba82b, 0xb170153285fd9556, 0xe90a07f7bdd1fd77, 0x9d4b5ee33e4bd661) ERROR: LoadError: Some tests did not pass: 258 passed, 0 failed, 1 errored, 2 broken. in expression starting at /home/pkgeval/.julia/packages/Diversity/trAoz/test/runtests.jl:10 Testing failed after 760.68s ERROR: LoadError: Package Diversity errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2946 [3] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/Operations.jl:2795 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:572 [5] kwcall(::@NamedTuple{julia_args::Cmd, io::IOContext{IO}}, ::typeof(Pkg.API.test), ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:548 [6] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:172 [7] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkgs::Vector{PackageSpec}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:161 [8] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [9] test @ /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:160 [inlined] [10] kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(Pkg.API.test), pkg::String) @ Pkg.API /opt/julia/share/julia/stdlib/v1.14/Pkg/src/API.jl:159 [11] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [12] include(mod::Module, _path::String) @ Base ./Base.jl:309 [13] exec_options(opts::Base.JLOptions) @ Base ./client.jl:344 [14] _start() @ Base ./client.jl:577 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1029.58s: package fails to precompile